Contig 009457:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012N17Sequence430009457 (3)ref|XP_009797320.1|2e-23PREDICTED: uncharacterized protein LOC104243766 isoform X1 [Nicotiana sylvestri800010033 (3)ref|XP_009797328.1|5e-38PREDICTED: uncharacterized protein LOC104243766 isoform X2 [Nicotiana sylvestri
JMSF036G22Sequence563009457 (3)ref|XP_006347864.1|4e-45PREDICTED: ankyrin repeat domain-containing protein 12-like [Solanum tuberosum]784010033 (3)ref|XP_009797328.1|1e-41PREDICTED: uncharacterized protein LOC104243766 isoform X2 [Nicotiana sylvestri
JMSF044A12Sequence504009457 (3)ref|XP_006347864.1|1e-37PREDICTED: ankyrin repeat domain-containing protein 12-like [Solanum tuberosum]551010033 (3)ref|XP_009797328.1|1e-28PREDICTED: uncharacterized protein LOC104243766 isoform X2 [Nicotiana sylvestri

Alignment

This contig is upended


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JMSF036G22+                                                TTCAGGGCAAAAGCTTTGTTTTT
                      ____________________________________________________________
consensus                                                  TTCAGGGCAAAAGCTTTGTTTTT
 
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JMSF044A12+                         TGCTTCAATATGTACTCACAAGATAAATCAATAAAACCGTAGCATG
JMSF036G22+           GCATGTTTGGGAGCTGCTTCAATATGTACTCACAAGATAAATCAATAAAACCGTAGCATG
                      ____________________________________________________________
consensus             GCATGTTTGGGAGCTGCTTCAATATGTACTCACAAGATAAATCAATAAAACCGTAGCATG
 
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JMSF044A12+           ATAAGAGGCCTTGGCCAGCCATAAATTCTTCAGTCCTTCCATAGGCATTAATGTCAAGTC
JMSF012N17+                                                TCCATAGGCANTAATGTCAAGTC
JMSF036G22+           ATAAGAGGCCTTGGCCAGCCATAAATTCTTCAGTCCTTCCATAGGCATTAATGTCAAGTC
                      ____________________________________________________________
consensus             ATAAGAGGCCTTGGCCAGCCATAAATTCTTCAGTCCTTCCATAGGCATTAATGTCAAGTC
 
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JMSF044A12+           CATTAGCGAGCAATTTCGCAAGGTCCTCCTTGAGAAACCTCTGCCTCGCTTCCGCTCTCC
JMSF012N17+           CATTAGCGAGCAATTTCGCAAGGTCCTCCTTGAGAAACCTCTGCCTCGCTTCCGCTCTCC
JMSF036G22+           CATTAGCGAGCAATTTCGCAAGGTCCTCCTTGAGAAACCTCTGCCTCGCTTCCGCTCTCC
                      ____________________________________________________________
consensus             CATTAGCGAGCAATTTCGCAAGGTCCTCCTTGAGAAACCTCTGCCTCGCTTCCGCTCTCC
 
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JMSF044A12+           GCCGCACCAATTCAATTCGCGATCTAGTGGCCTTTATCAGCGATTTACATTTAGAGCTGA
JMSF012N17+           GCCGCACCAATTCAATTCGCGATCTAGTGGCCTTTATCAGCGATTTACATTTAGAGCTGA
JMSF036G22+           GCCGCACCAATTCAATTCGCGATCTAGTGGCCTTTATCAGCGATTTACATTTAGAGCTGA
                      ____________________________________________________________
consensus             GCCGCACCAATTCAATTCGCGATCTAGTGGCCTTTATCAGCGATTTACATTTAGAGCTGA
 
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JMSF044A12+           AACCGCGGCCGAGAATACCGTCAAGCATCTCCGATCTCCGGCAGACAACTGCGTTTGGCT
JMSF012N17+           AACCGCGGCCGAGAATACCGTCAAGCATCTCCGATCTCCGGCAGACAACTGCGTTTGGCT
JMSF036G22+           AACCGCGGCCGAGAATACCGTCAAGCATCTCCGATCTCCGGCAGACAACTGCGTTTGGCT
                      ____________________________________________________________
consensus             AACCGCGGCCGAGAATACCGTCAAGCATCTCCGATCTCCGGCAGACAACTGCGTTTGGCT
 
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JMSF044A12+           TTGGTTCAGAAGTTGTTGTCAACCTCCGAGAACACAACTACGCCGATTTCGTATTCACCG
JMSF012N17+           TTGGTTCAGAAGTTGTTGTCAACCTCCGAGAACACAANTACGCCGATTTCGTATTCACCG
JMSF036G22+           TTGGTTCAGAAGTTGTTGTCAACCTCCGAGAACACAANTACGCCGATTTCGTATTCACCG
                      ____________________________________________________________
consensus             TTGGTTCAGAAGTTGTTGTCAACCTCCGAGAACACAACTACGCCGATTTCGTATTCACCG
 
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JMSF044A12+           AAACAGATCCGCCATTTGAGAGACTTGAAGAAGAGCTTGCACCGGAAGATATGTATATGT
JMSF012N17+           AAACAGATCCGCCATTTGAGAGACTTGAAGAAGAGCTTGCACCGGAAGATATGTATATGT
JMSF036G22+           AAACAGATCCGCCATTTGAGAGACTTGAAGAAGAGCTTGCACCGGAAGATATGTATATGT
                      ____________________________________________________________
consensus             AAACAGATCCGCCATTTGAGAGACTTGAAGAAGAGCTTGCACCGGAAGATATGTATATGT
 
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JMSF044A12+           ATATACANCCGTATGAGTAGCGATTAGTATTTAGCCANTTAGGGAAGAGGAGAGAGAGAG
JMSF012N17+           ATATACANCCGTATGAGTAGCGATTAGTATTTAGCCANTTAGGGAAGAGGAGAGAGAGAG
JMSF036G22+           ATATACANCCGTATGAGTAGCGATTAGTATTTAGCCANTTAGGGAAGAGGAGAGAGAGAG
                      ____________________________________________________________
consensus             ATATACANCCGTATGAGTAGCGATTAGTATTTAGCCANTTAGGGAAGAGGAGAGAGAGAG
 
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JMSF044A12+           AGAGAGAGAGAGGGAGGGATAGAATTTGAGCAATCTT                       
JMSF012N17+           AGAGAGAGAGAGGGAGGGATAGAATTTGAGCAATCTTAGTGGAACT              
JMSF036G22+           AGAGAGAGAGAGGGAGGGATAGAATTTGAGCAATCTTAGTGGAACTGTGGAAGTTCCGCC
                      ____________________________________________________________
consensus             AGAGAGAGAGAGGGAGGGATAGAATTTGAGCAATCTTAGTGGAACTGTGGAAGTTCCGCC