clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFS064F03 | Sequence | 612 | 009454 (3) | ref|XP_006444298.1| | 1e-88 | hypothetical protein CICLE_v100188992mg, partial [Citrus clementina] gb|ESR57538 | |||||
JMSF036C16 | Sequence | 710 | 009454 (3) | ref|XP_009598046.1| | 5e-109 | PREDICTED: DNA mismatch repair protein PMS1 isoform X3 [Nicotiana tomentosiform | 766 | 008590 (5) | gb|KDP28142.1| | 2e-116 | hypothetical protein JCGZ_13913 [Jatropha curcas] |
JMSF036E06 | Sequence | 669 | 009454 (3) | ref|XP_009598046.1| | 9e-111 | PREDICTED: DNA mismatch repair protein PMS1 isoform X3 [Nicotiana tomentosiform | 734 | 008590 (5) | gb|KDP28142.1| | 1e-86 | hypothetical protein JCGZ_13913 [Jatropha curcas] |
This contig is upended
. : . : . : . : . : . :
JMSF036E06+ AATCAGAGCATAGGCATTCAACAAAGTGATAAGCTTCCCATATTCCTTGCG
JMSF036C16+ ATCAGAGCATAGGCATTCAACAAAGTGATAAGCTTCCCATATTCCTTGCG
____________________________________________________________
consensus AATCAGAGCATAGGCATTCAACAAAGTGATAAGCTTCCCATATTCCTTGCG
. : . : . : . : . : . :
JMSF036E06+ AATGTTGCGATGGAACTCCTTACTTCTTACAGGTAAATTGGAGAATAACTTCTTAATGGT
JMFS064F03+ TGGAGAATAACTTCTTAATGGT
JMSF036C16+ AATGTTGCGATGGAACTCCTTACTTCTTACAGGTAAATTGGAGAATAACTTCTTAATGGT
____________________________________________________________
consensus AATGTTGCGATGGAACTCCTTACTTCTTACAGGTAAATTGGAGAATAACTTCTTAATGGT
. : . : . : . : . : . :
JMSF036E06+ GACTGTGGTACCAACTTGCCTTGCGGTCTTTGTTTCTTCTATTAGAAGCCCAGAATGATT
JMFS064F03+ GACTGTGGTACCAACTTGCCTTGCGGTCTTTGTTTCTTCTATTAGAAGCCCAGAATGATT
JMSF036C16+ GACTGTGGTACCAACTTGCCTTGCGGTCTTTGTTTCTTCTATTAGAAGCCCAGAATGATT
____________________________________________________________
consensus GACTGTGGTACCAACTTGCCTTGCGGTCTTTGTTTCTTCTATTAGAAGCCCAGAATGATT
. : . : . : . : . : . :
JMSF036E06+ GAAAATCAAGTGTGTTGCCACTGGTTCATTCCTAGTTCTTGTCTCCACAGTTAAATCCCC
JMFS064F03+ GAAAATCAAGTGTGTTGCCACTGGTTCATTCCTAGTTCTTGTCTCCACAGTTAAATCCCC
JMSF036C16+ GAAAATCAAGTGTGTTGCCACTGGTTCATTCCTAGTTCTTGTCTCCACAGTTAAATCCCC
____________________________________________________________
consensus GAAAATCAAGTGTGTTGCCACTGGTTCATTCCTAGTTCTTGTCTCCACAGTTAAATCCCC
. : . : . : . : . : . :
JMSF036E06+ TAAAGCACAAAGGGAACTCAATGCCTCCCCTCTGAACCCAAAAGTAGTTAAACTCTGAAG
JMFS064F03+ TAAAGCACAAAGGGAACTCAATGCCTCCCCTCTGAACCCAAAAGTAGTTAAACTCTGAAG
JMSF036C16+ TAAAGCACAAAGGGAACTCAATGCCTCCCCTCTGAACCCAAAAGTAGTTAAAATCTGAAG
____________________________________________________________
consensus TAAAGCACAAAGGGAACTCAATGCCTCCCCTCTGAACCCAAAAGTAGTTAAACTCTGAAG
. : . : . : . : . : . :
JMSF036E06+ GTCAGGAAAATCTGATAGCTTTGATGTATGATGCTTCAGAGCGAGAACCTTAAAATTGTG
JMFS064F03+ GTCAGGAAAATCTGATAGCTTTGATGTATGATGCTTCAGAGCGAGAACCTTAAAATTGTG
JMSF036C16+ GTCAGGAAAATCTGATAGCTTTGATGTATGATGCTTCAGAGCGAGAACCTTAAAATTGTG
____________________________________________________________
consensus GTCAGGAAAATCTGATAGCTTTGATGTATGATGCTTCAGAGCGAGAACCTTAAAATTGTG
. : . : . : . : . : . :
JMSF036E06+ AGGAGAAATGCCGCAACCATTGTCGATGACCTGGAATGATTCGCCGCCGTAGTCTTTGAG
JMFS064F03+ AGGAGAAATGCCGCAACCATTGTCGATGACCTGGAATGATTCGCCGCCGTAGTCTTTGAG
JMSF036C16+ AGGAGAAATGCCGCAACCATTGTCGATGACCTGGAATGATTCGCCGCCGTAGTCTTTGAG
____________________________________________________________
consensus AGGAGAAATGCCGCAACCATTGTCGATGACCTGGAATGATTCGCCGCCGTAGTCTTTGAG
. : . : . : . : . : . :
JMSF036E06+ GGCAACCTCGATGCTGGTGGCGCCGGCGTCTAAGCTGTTCTCCACCAGCTCCTTGACGGC
JMFS064F03+ GGCAACCTCGATGCTGGTGGCGCCGGCGTCTAAGCTGTTCTCCACCAGCTCCTTGACGGC
JMSF036C16+ GGCAACCTCGATGCTGGTGGCGCCGGCGTCTAAGCTGTTCTCCACCAGCTCCTTGACGGC
____________________________________________________________
consensus GGCAACCTCGATGCTGGTGGCGCCGGCGTCTAAGCTGTTCTCCACCAGCTCCTTGACGGC
. : . : . : . : . : . :
JMSF036E06+ AGAGGAAAGGTCGAGAATGACTTGGCCAGCACAAATCCGGTGAACGACGCCCTTGTTGAT
JMFS064F03+ AGAGGAAAGGTCGAGAATGACTTGGCCAGCACAAATCCGGTGAACGACGCCCTTGTTGAT
JMSF036C16+ AGAGGAAAGGTCGAGAATGACTTGGCCAGCACAAATCCGGTGAACGACGCCCTTGTTGAT
____________________________________________________________
consensus AGAGGAAAGGTCGAGAATGACTTGGCCAGCACAAATCCGGTGAACGACGCCCTTGTTGAT
. : . : . : . : . : . :
JMSF036E06+ GGGCTTGATGGTTGGGGAATCGGAAGATGAAGCTGCTCCTCCCTCCATGCGATTGAGTCT
JMFS064F03+ GGGCTTGATGGTTGGGGAATCGGAAGATGAAGCTGCTCCTCCCTCCATGCGATTGAGTCT
JMSF036C16+ GGGCTTGATGGTTGGGGAATCGGAAGATGAAGCTGCTCCTCCCTCCATGCGATTGAGTCT
____________________________________________________________
consensus GGGCTTGATGGTTGGGGAATCGGAAGATGAAGCTGCTCCTCCCTCCATGCGATTGAGTCT
. : . : . : . : . : . :
JMSF036E06+ CACTGTTGTAGGACAGTGACAACCGATCACAAATTCCCCACAGTTCTAAGCTCAATGTGT
JMFS064F03+ CACTGTTGTAGGACAGTGACAACCGATCACAAATTCTCCACAGTTCTAAGCTCAATGTGT
JMSF036C16+ CACTGTTGTAGGACAGTGACAACCGATCACAAATTCTCCACAGTTCTAAGTTCAATGTGT
____________________________________________________________
consensus CACTGTTGTAGGACAGTGACAACCGATCACAAATTCTCCACAGTTCTAAGCTCAATGTGT
. : . : . : . : . : . :
JMSF036E06+ AATCTATTGCAGTGCGT
JMFS064F03+ AATCTATTGCAGTGCGTAAATCGTAACTGAAGTCTCCAAAGTA
JMSF036C16+ AATCTATTGCAGTGCGTAAATCGTAACTGAAGTCTCCAAAGTATAATTTCAGTTCAGACC
____________________________________________________________
consensus AATCTATTGCAGTGCGTAAATCGTAACTGAAGTCTCCAAAGTATAATTTCAGTTCAGACC