Contig 009425:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032A11-                                                               AAGGATA
                      ____________________________________________________________
consensus                                                                  AAGGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032A11-          ACGATAGCCTAACAATCTAAACATTGTCTCCTTACAAAATAGATGTTAAGTGCAAAGCAT
                      ____________________________________________________________
consensus             ACGATAGCCTAACAATCTAAACATTGTCTCCTTACAAAATAGATGTTAAGTGCAAAGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032A11-          AGGTAGTGTAGTCATGACATAGATTGCGACTCTTTTAGGCCGTGTCTACTGCAGGATGCA
                      ____________________________________________________________
consensus             AGGTAGTGTAGTCATGACATAGATTGCGACTCTTTTAGGCCGTGTCTACTGCAGGATGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032A11-          GCTAATAGCAAGGTTGCGGGGATGCTGTCCATATTCGACGAGCTCTAAGTGTAATGCATT
JMSF032A11+                                                             GTAATGCATT
                      ____________________________________________________________
consensus             GCTAATAGCAAGGTTGCGGGGATGCTGTCCATATTCGACGAGCTCTAAGTGTAATGCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032A11-          GCCATTGGCCGAGGCATGATACGAGTATACAACGTACATCGTGTTTCAAATGTTCGAACT
JMSF032A11+           GCCATTGGCCGAGGCATGATACGAGTATACAACGTACATCGTGTTTCAAATGTTCGAACT
                      ____________________________________________________________
consensus             GCCATTGGCCGAGGCATGATACGAGTATACAACGTACATCGTGTTTCAAATGTTCGAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032A11-          TATAGTTCATCATGCCCTGAAGATGGCTCGTTAAAGAAAAAAGATATTTCCCGGGCTGCA
JMSF032A11+           TATAGTTCATCATGCCCTGAAGATGGCTCGTTAAAGAAAAAAGATATTTCCCGGGCTGCA
                      ____________________________________________________________
consensus             TATAGTTCATCATGCCCTGAAGATGGCTCGTTAAAGAAAAAAGATATTTCCCGGGCTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032A11-          GATTGGGGCGAGTCTGAACCATGAACACAATTTCTTTGCAAATCCAGCCCGCACATGGCT
JMSF032A11+           GATTGGGGCGAGTCTGAACCATGAACACAATTTCTTTGCAAATCCAGCCCGCACATGGCT
                      ____________________________________________________________
consensus             GATTGGGGCGAGTCTGAACCATGAACACAATTTCTTTGCAAATCCAGCCCGCACATGGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032A11-          CTGATACTGTGAGGATGAGTAGCCTTGGCTTTGAGAGGGTCAGTTGGTCCAATTAAAGCA
JMSF032A11+           CTGATACTGTGAGGATGAGTAGCCTTGGCTTTGAGAGGGTCAGTTGGTCCAATTAAAGCA
                      ____________________________________________________________
consensus             CTGATACTGTGAGGATGAGTAGCCTTGGCTTTGAGAGGGTCAGTTGGTCCAATTAAAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032A11-          CGCCAATCATCAATCGCATTCCCTTTTTCTAAAGCCATTATCAGCACCGGGCCACTTGTC
JMSF032A11+           CGCCAATCATCAATCGCATTCCCTTTTTCTAAAGCCATTATCAGCACCGGGCCACTTGTC
                      ____________________________________________________________
consensus             CGCCAATCATCAATCGCATTCCCTTTTTCTAAAGCCATTATCAGCACCGGGCCACTTGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032A11-          ATGTACTCGATGAGGCTCGGAAAGAAGCTCTTTAAAGAATGCTCAGCATAAAAGCTTTTC
JMSF032A11+           ATGTACTCGATGAGGCTCGGAAAGAAGCTCTTTAAAGAATGCTCAGCATAAAAGCTTTTC
                      ____________________________________________________________
consensus             ATGTACTCGATGAGGCTCGGAAAGAAGCTCTTTAAAGAATGCTCAGCATAAAAGCTTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032A11-          ACAGTATCCTCGCTTAGCTGAACAAATAGTTCTCGAGTAATACTGAAACCGTGATTATTA
JMSF032A11+           ACAGTATCCTCGCTTAGCTGAACAAATAGTTCTCGAGTAATACTGAAACCGTGATTATTA
                      ____________________________________________________________
consensus             ACAGTATCCTCGCTTAGCTGAACAAATAGTTCTCGAGTAATACTGAAACCGTGATTATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032A11-          ATGGTTTCCTTTATAACACTTGAATAGTTACCCAAAATTCCATCTGGCTTAATCATAGCT
JMSF032A11+           ATGGTTTCCTTTATAACACTTGAATAGTTACCCAAAATTCCATCTGGCTTAATCATAGCT
                      ____________________________________________________________
consensus             ATGGTTTCCTTTATAACACTTGAATAGTTACCCAAAATTCCATCTGGCTTAATCATAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032A11-          AAGGTCTTTTCATTCTCTGCAGTAACGGCTGCTGAAGATCTGTGAGAGAGACACACAGTG
JMSF032A11+           AAGGTCTTTTCATTCTCTGCAGTAACGGCTGCTGAAGATCTGTGAGAGAGACACACAGTG
                      ____________________________________________________________
consensus             AAGGTCTTTTCATTCTCTGCAGTAACGGCTGCTGAAGATCTGTGAGAGAGACACACAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032A11-          GAGATTAGAACGAAGAAGAGANCAAACTT                               
JMSF032A11+           GAGATTAGAACGAAGAAGAGAACAAACTTTGTGAAGAAGGGGGCCATTTGAAGCATCGAG
                      ____________________________________________________________
consensus             GAGATTAGAACGAAGAAGAGAACAAACTTTGTGAAGAAGGGGGCCATTTGAAGCATCGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032A11+           CACTGATGATTGCGAAGGAGAGATCTGAGAAGGAAGAGAAATGGAACTCTCGACGGCACG
                      ____________________________________________________________
consensus             CACTGATGATTGCGAAGGAGAGATCTGAGAAGGAAGAGAAATGGAACTCTCGACGGCACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032A11+           AGCATTGACGGGAAAGCTTTCTTACAGTGCCCGGAGAAAGTGGCCTCCGGAGATCGCACC
                      ____________________________________________________________
consensus             AGCATTGACGGGAAAGCTTTCTTACAGTGCCCGGAGAAAGTGGCCTCCGGAGATCGCACC