Contig 009416:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014D24Sequence502009416 (3)ref|XP_011085688.1|8e-71PREDICTED: ras GTPase-activating protein-binding protein 2-like [Sesamum indicu789003982 (3)ref|XP_009764521.1|1e-35PREDICTED: ras GTPase-activating protein-binding protein 2 [Nicotiana sylvestri
JMSF012B19Sequence231009416 (3)ref|XP_007139477.1|8e-10hypothetical protein PHAVU_008G032800g [Phaseolus vulgaris] gb|ESW11471.1| hypot775003982 (3)ref|XP_006338360.1|1e-35PREDICTED: ras GTPase-activating protein-binding protein 2-like isoform X2 [Sol
JMSF031F17Sequence679009416 (3)ref|XP_009764521.1|9e-77PREDICTED: ras GTPase-activating protein-binding protein 2 [Nicotiana sylvestri738003982 (3)ref|XP_006338360.1|5e-35PREDICTED: ras GTPase-activating protein-binding protein 2-like isoform X2 [Sol

Alignment

This contig is upended


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JMSF031F17+                                                    GTATCAGAGCTAGCTGGGT
                      ____________________________________________________________
consensus                                                      GTATCAGAGCTAGCTGGGT
 
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JMSF031F17+           TGGCATTAAGAGAATCAGGCACATGAGCAGGTTCTGGATCAGGGGCCTCAGGGCTTGGAA
                      ____________________________________________________________
consensus             TGGCATTAAGAGAATCAGGCACATGAGCAGGTTCTGGATCAGGGGCCTCAGGGCTTGGAA
 
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JMFF014D24+                                                               CTCATCTT
JMSF031F17+           TCACTGTTGGTTCATCATCAACTCCATTAACCATTTTTGCATTAGAATCTGCCTCATCTT
                      ____________________________________________________________
consensus             TCACTGTTGGTTCATCATCAACTCCATTAACCATTTTTGCATTAGAATCTGCCTCATCTT
 
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JMFF014D24+           GCTCAACATACCTAAAGACATCATTCAGAACAAAATAGCCTTTGTCTTGCGGAGCAAGGA
JMSF031F17+           GCTCAACATACCTAAAGACATCATTCAGAACAAAATAGCCTTTGTCTTGCGGAGCAAGGA
                      ____________________________________________________________
consensus             GCTCAACATACCTAAAGACATCATTCAGAACAAAATAGCCTTTGTCTTGCGGAGCAAGGA
 
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JMFF014D24+           AAAACGTCTGCGTGAACTTCCTTTTTAAATTGTCCTTTCCAGTTAAACAACCAGTTACCA
JMSF031F17+           AAAACGTCTGCGTGAACTTCCTTTTTAAATTGTCCTTTCCAGTTAAACAACCAGTTACCA
                      ____________________________________________________________
consensus             AAAACGTCTGCGTGAACTTCCTTTTTAAATTGTCCTTTCCAGTTAAACAACCAGTTACCA
 
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JMFF014D24+           AAACAATCACCCCACCATTGTAGGAATTCTGAGCATCTGCAGTTTTTATCTCTGCATCAT
JMSF031F17+           AAACAATCACCCCACCATTGTAGGAATTCTGAGCATCTGCAGTTTTTATCTCTGCATCAT
                      ____________________________________________________________
consensus             AAACAATCACCCCACCATTGTAGGAATTCTGAGCATCTGCAGTTTTTATCTCTGCATCAT
 
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JMFF014D24+           AGTTCTCGTAATCCAAGGAACGTATCTTATCATTAATACGATCCATGGTTGTCACAGATG
JMSF031F17+           AGTTCTCGTAATCCAAGGAACGTATCTTATCATTAATACGATCCATGGTTGTCACAGATG
                      ____________________________________________________________
consensus             AGTTCTCGTAATCCAAGGAACGTATCTTATCATTAATACGATCCATGGTTGTCACAGATG
 
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JMFF014D24+           TCATAGAACCATCAGGATCTGGGCGACTTAACACACTTGACTCCTGATAAAATCTGTAGA
JMSF012B19+                                                               TCTGTAGA
JMSF031F17+           TCATAGAACCATCAGGATCTGGGCGACTTAACACACTTGACTCCTGATAAAATCTGTAGA
                      ____________________________________________________________
consensus             TCATAGAACCATCAGGATCTGGGCGACTTAACACACTTGACTCCTGATAAAATCTGTAGA
 
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JMFF014D24+           CCTGGTCTGGTGAGTGGTGGAGAATAAGGTAATATTGTTCCACAAACGCATTTCCAACCA
JMSF012B19+           CCTGGTCTGGTGAGTGGTGGAGAATAAGGTAATATTGTTCCACAAACGCATTTCCAACCA
JMSF031F17+           CCTGGTCTGGTGAGTGGTGGAGAATAAGGTAATATTGTTCCACAAACGCATTTCCAACCA
                      ____________________________________________________________
consensus             CCTGGTCTGGTGAGTGGTGGAGAATAAGGTAATATTGTTCCACAAACGCATTTCCAACCA
 
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JMFF014D24+           ATTGTGCACTAGGTCCAGGAACTGTTGCCGGTGTTGTAGTTTGCATCGCCATTCTGAAAT
JMSF012B19+           ATTGTGCACTAGGTCCAGGAACTGTTGCCGGTGTTGTAGTTTGCATCGCCATTCTGAAAT
JMSF031F17+           ATTGTGCACTAGGTCCAGGAACTGTTGCCGGTGTTGTAGTTTGCATCGCCATTCTGAAAT
                      ____________________________________________________________
consensus             ATTGTGCACTAGGTCCAGGAACTGTTGCCGGTGTTGTAGTTTGCATCGCCATTCTGAAAT
 
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JMFF014D24+           AGATGTTTTATAGGGTGGCGAAGATTTGTGATTCAGTTCAGCGGCTTGGCGAGAGAGAAA
JMSF012B19+           AGATGTTTTATAGGGTGGCGAAGATTTGTGATTCAGTTCAGCGGCTTGGCGAGAGAGAAA
JMSF031F17+           AGATGTTTTATAGGGTGGCGAAGATTTGTGATTCAGTTCAGCGGCTTGGCGAGAGAGAAA
                      ____________________________________________________________
consensus             AGATGTTTTATAGGGTGGCGAAGATTTGTGATTCAGTTCAGCGGCTTGGCGAGAGAGAAA
 
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JMFF014D24+           GTGTTTTAGT                                                  
JMSF012B19+           GTGTTTTAGTTCACAAAAAGAAGGAGGGGAATATTTCTGACT                  
JMSF031F17+           GTGTTTTAGTTCACAAAAAGAAGGAGGGGAATATTTCTGACTGGCTTATGCTTCAGCCAC
                      ____________________________________________________________
consensus             GTGTTTTAGTTCACAAAAAGAAGGAGGGGAATATTTCTGACTGGCTTATGCTTCAGCCAC