Contig 009397:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014N24Sequence548009397 (3)794001232 (3)ref|XP_009601118.1|5e-94PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2 [Nicotiana
JMFF049B01Sequence647009397 (3)635001232 (3)ref|XP_002528658.1|7e-24conserved hypothetical protein [Ricinus communis] gb|EEF33724.1| conserved hypot
JMSF029L18Sequence688009397 (3)ref|XP_009601118.1|6e-06PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2 [Nicotiana 745001232 (3)ref|XP_009601118.1|1e-79PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2 [Nicotiana

Alignment

This contig is upended


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JMSF029L18+                                           CTGATGATATAGGGCTTCAGACGAGGGA
                      ____________________________________________________________
consensus                                             CTGATGATATAGGGCTTCAGACGAGGGA
 
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JMSF029L18+           CGCTTCAACCCAGAAAGAAATGGGTCAGCAACAGCTGGTCCAATATCAACACCAGGAGGA
                      ____________________________________________________________
consensus             CGCTTCAACCCAGAAAGAAATGGGTCAGCAACAGCTGGTCCAATATCAACACCAGGAGGA
 
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JMFF049B01+                                    ATTGAGGGGCTGTAGGAATTCTAGTGCCAGCAGAG
JMFF014N24+                                                              CCAGCAGAG
JMSF029L18+           CCAGACCACGATGACTGAGAAGCCAATTGAGGGGCTGTAGGAATTCTAGTGCCAGCAGAG
                      ____________________________________________________________
consensus             CCAGACCACGATGACTGAGAAGCCAATTGAGGGGCTGTAGGAATTCTAGTGCCAGCAGAG
 
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JMFF049B01+           GAGAAACTATTATTAGTACGATTAAATAGCATGGCTGACCAGTGATGAGTACGAGAGAAC
JMFF014N24+           GAGAAACTATTATTAGTACGATTAAATAGCATGGCTGACCAGTGATGAGTACGAGAGAAC
JMSF029L18+           GAGAAACTATTATTAGTACGATTAAATAGCATGGCTGACCAGTGATGAGTACGAGAGAAC
                      ____________________________________________________________
consensus             GAGAAACTATTATTAGTACGATTAAATAGCATGGCTGACCAGTGATGAGTACGAGAGAAC
 
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JMFF049B01+           TTGTAGCCGGAGAGCGGTTCAAGCAGTGGGTTGCACGGAGATAATAGCCAAACAATGACG
JMFF014N24+           TTGTAGCCGGAGAGCGGTTCAAGCAGTGGGTTGCACGGAGATAATAGCCAAACAATGACG
JMSF029L18+           TTGTAGCCGGAGAGCGGTTCAAGCAGTGGGTTGCACGGAGATAATAGCCAAACAATGACG
                      ____________________________________________________________
consensus             TTGTAGCCGGAGAGCGGTTCAAGCAGTGGGTTGCACGGAGATAATAGCCAAACAATGACG
 
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JMFF049B01+           TGCCTGGTTTTCAGCCTTGAACTTTTAAGACTTCCTCAGTAGCCCAAATTTCATTCCATC
JMFF014N24+           TGCCTGGTTTTCAGCCTTGAACTTTTAAGACTTCCTCAGTAGCCCAAATTTCATTCCATC
JMSF029L18+           TGCCTGGTTTTCAGCCTTGAACTTTTAAGACTTCCTCAGTAGCCCAAATTTCATTCCATC
                      ____________________________________________________________
consensus             TGCCTGGTTTTCAGCCTTGAACTTTTAAGACTTCCTCAGTAGCCCAAATTTCATTCCATC
 
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JMFF049B01+           TGATAAAACAGAATATGGCTTAAAGGCTGCTGCTGTGGCCTGTGGAGATTCCAGCGGCAA
JMFF014N24+           TGATAAAACAGAATATGGCTTAAAGGCTGCTGCTGTGGCCTGTGGAGATTCCAGCGGCAA
JMSF029L18+           TGATAAAACAGAATATGGCTTAAAGGCTGCTGCTGTGGCCTGTGGAGATTCCAGCGGCAA
                      ____________________________________________________________
consensus             TGATAAAACAGAATATGGCTTAAAGGCTGCTGCTGTGGCCTGTGGAGATTCCAGCGGCAA
 
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JMFF049B01+           ATGAACAGAACTCAGTGACGACAGACGAACAGAAACAACAATGGGATGGGACTTCGGCAG
JMFF014N24+           ATGAACAGAACTCAGTGACGACAGACGAACAGAAACAACAATGGGATGGGACTTCGGCAG
JMSF029L18+           ATGAACAGAACTCAGTGACGACAGACGAACAGAAACAACAATGGGATGGGACTTCGGCAG
                      ____________________________________________________________
consensus             ATGAACAGAACTCAGTGACGACAGACGAACAGAAACAACAATGGGATGGGACTTCGGCAG
 
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JMFF049B01+           TGGACGACAACGCTGATACGATAGGGATTTTGTTTACTCAGGGCGATAACTAAACCCTAA
JMFF014N24+           TGGACGACAACGCTGATACGATAGGGATTTTGTTTACTCAGGGCGATAACTAAACCCTAG
JMSF029L18+           TGGACGACAACGCTGATACGATAGGGATTTTGTTTACTCAGGGCGATAACTAAACCCTAA
                      ____________________________________________________________
consensus             TGGACGACAACGCTGATACGATAGGGATTTTGTTTACTCAGGGCGATAACTAAACCCTAA
 
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JMFF049B01+           TTTCAGAATACAAAGAAATTGCAAAATCTAATTCGATGAGTATTTGTCGGCAATATGAAA
JMFF014N24+           TTTCAGAATACAAAGAAATTGCAAAATCTAATTCGATGAGTATTTGTCGGCAATATGAAA
JMSF029L18+           TTTCAGAATACAAAGAAATTGCAAAATCTAATTCGATGAGTATTTGTCGGCAATATGAAA
                      ____________________________________________________________
consensus             TTTCAGAATACAAAGAAATTGCAAAATCTAATTCGATGAGTATTTGTCGGCAATATGAAA
 
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JMFF049B01+           ATGATAATTCTGATTTATTATAAACATATATTCAAAAACCAGGATAGCATCAAAGTCGTT
JMFF014N24+           ATGATAATTCTGATTTATTATAAACATATATTCAAAAACCAGGATAGCATCAAAGTCGTT
JMSF029L18+           ATGATAATTCTGATTTATTATTAACATATATTCAAAAACCAGGATAGCATCAAAGTCGTT
                      ____________________________________________________________
consensus             ATGATAATTCTGATTTATTATAAACATATATTCAAAAACCAGGATAGCATCAAAGTCGTT
 
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JMFF049B01+           CTTAGATGCCCTTCTCGATCTCTTTTCTTCGGCTTTTGCGGTTCTCCTCTC         
JMFF014N24+           CTTAGATGCCCTTCTCGATCTCTTTTCTTCGGCTTTTGCTGTTTTCCTCTCAGTTT    
JMSF029L18+           CTTAGATGCCCTTCTCGATCTCTTTTCTTCGGCTTTTGCTGTTTTCCTCTCAGTTTTCTC
                      ____________________________________________________________
consensus             CTTAGATGCCCTTCTCGATCTCTTTTCTTCGGCTTTTGCTGTTTTCCTCTCAGTTTTCTC