Contig 009396:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026A24Sequence446009396 (6)ref|XP_006354963.1|6e-42PREDICTED: dof zinc finger protein DOF3.4-like [Solanum tuberosum]686012317 (2)
JMFF033B14Sequence447009396 (6)ref|XP_006354963.1|6e-42PREDICTED: dof zinc finger protein DOF3.4-like [Solanum tuberosum]701012317 (2)
JMSF013N19Sequence464009396 (6)ref|XP_009758434.1|6e-07PREDICTED: dof zinc finger protein DOF2.1-like isoform X1 [Nicotiana sylvestris694005716 (4)ref|XP_009598584.1|4e-12PREDICTED: dof zinc finger protein DOF2.1-like [Nicotiana tomentosiformis]
JMSF017M07Sequence446009396 (6)708005716 (4)ref|XP_009598584.1|3e-12PREDICTED: dof zinc finger protein DOF2.1-like [Nicotiana tomentosiformis]
JMSF028P05Sequence659009396 (6)ref|XP_009598584.1|1e-50PREDICTED: dof zinc finger protein DOF2.1-like [Nicotiana tomentosiformis]670005716 (4)ref|XP_009598584.1|3e-19PREDICTED: dof zinc finger protein DOF2.1-like [Nicotiana tomentosiformis]
JMSF029J09Sequence599009396 (6)ref|XP_009758434.1|2e-42PREDICTED: dof zinc finger protein DOF2.1-like isoform X1 [Nicotiana sylvestris672005716 (4)ref|XP_009598584.1|1e-08PREDICTED: dof zinc finger protein DOF2.1-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF028P05+ ATCCGCTTGTTTCTGCAAGCTCGCGAATGTGAGGCCC
                      ____________________________________________________________
consensus ATCCGCTTGTTTCTGCAAGCTCGCGAATGTGAGGCCC
 
. : . : . : . : . : . :
JMSF028P05+ AGATCGTGGGGGGATTCGTAGGGGAAGGTTGTGAGGACGAGGCTAGAGGTCAAGGATTGA
                      ____________________________________________________________
consensus AGATCGTGGGGGGATTCGTAGGGGAAGGTTGTGAGGACGAGGCTAGAGGTCAAGGATTGA
 
. : . : . : . : . : . :
JMSF028P05+ TGGGGATCTTGTTGGCCGGTTGAGATTCTGGGTTTGGAGGAGGAAGATGACGACCTTCTG
                      ____________________________________________________________
consensus TGGGGATCTTGTTGGCCGGTTGAGATTCTGGGTTTGGAGGAGGAAGATGACGACCTTCTG
 
. : . : . : . : . : . :
JMFF026A24+ GCCGCCGCCGACGGGGACGTTCCGCAGGGTGCCGCCGCGGGTCCAGTAA
JMFF033B14+ GCCGCCGCCGACGGGGACGTTCCGCAGGGTGCCGCCGCGGGTCCAGTAA
JMSF028P05+ TTTTTCCGGCAGCCGCCGCCGACGGGGACGTTGCGGAGGGTGCCGCCTTTGGTCCAGTAT
JMSF029J09+ GCCGCCGCCGACGGGGACGTTGCGGAGGGTGCCGCCTTTGGTCCAGTAT
                      ____________________________________________________________
consensus TTTTTCCGGCAGCCGCCGCCGACGGGGACGTTGCGGAGGGTGCCGCCTTTGGTCCAGTAT
 
. : . : . : . : . : . :
JMFF026A24+ CGGCGGCAGGATTTGCAAAAGTGGCGAGGCTGAGAGAGGTTGTAGTTGTTGTAGTAACAG
JMFF033B14+ CGGCGGCAGGATTTGCAAAAGTGGCGAGGCTGAGAGAGGTTGTAGTTGTTGTAGTAACAG
JMSF028P05+ CTCCGGCAGGATTTGCAGAAGTAGCGCGGCTGAGAGAGGCTGTAGTTGTTGTAGTAACAG
JMSF029J09+ CTCCGGCAGGATTTGCAGAAGTAGCGCGGCTGAGAGAGGCTGTAGTTGTTGTAGTAACAG
                      ____________________________________________________________
consensus CTGCGGCAGGATTTGCAGAAGTGGCGCGGCTGAGAGAGGTTGTAGTTGTTGTAGTAACAG
 
. : . : . : . : . : . :
JMFF026A24+ AA
JMFF033B14+ AA
JMSF028P05+ AATTTGGTGTTGGTGGATTCGCATCTAGGGCATTTCTGGGCGTGCTCATCCGCCGGCCGC
JMSF013N19+ GATTCGCATCTAGGGCATTTCTGGGCGTGCTCATCCGCCGGCCGC
JMSF017M07+ TCTGGGCGTGCTCATCCGCCGGCCGC
JMSF029J09+ AATTTGGTGTTGGTGGATTCGCATCTAGGGCATTTCTGGGCGTGCTCATCCGCCGGCCGC
                      ____________________________________________________________
consensus AATTTGGTGTTGGTGGATTCGCATCTAGGGCATTTCTGGGCGTGCTCATCCGCCGGCCGC
 
. : . : . : . : . : . :
JMSF028P05+ GGCTTCTTCTCTTGCTGCTGTGCCTTTGCCGACGCCTCCACCATGCTTTCTAGCGTCTGT
JMSF013N19+ GGCTTCTTCTCTTGCTGCTGTGCCTTTGCCGACGCCTCCACCATGCTTTCTAGCGTCTGT
JMSF017M07+ GGCTTCTTCTCTTGCTGCTGTGCCTTTGCCGACGCCTCCACCATGCTTTCTAGCGTCTGT
JMSF029J09+ GGCTTCTTCTCTTGCTGCTGTGCCTTTGCCGACGCCTCCACCATGCTTTCTAGCGTCTGT
                      ____________________________________________________________
consensus GGCTTCTTCTCTTGCTGCTGTGCCTTTGCCGACGCCTCCACCATGCTTTCTAGCGTCTGT
 
. : . : . : . : . : . :
JMSF028P05+ GATGACATTTCCTGTGCACAAGAAGGATCCATCCATGCACCAATTACGGCAGCAGCTATG
JMSF013N19+ GATGACATTTCCTGTGCACAAGAAGGATCCATCCATGCACCAATTACGGCAGCAGCTATG
JMSF017M07+ GATGACATTTCCTGTGCACAAGAAGGATCCATCCATGCACCAATTACGGCAGCAGCTATG
JMSF029J09+ GATGACATTTCCTGTGCACAAGAAGGATCCATCCATGCACCAATTACGGCAGCAGCTATG
                      ____________________________________________________________
consensus GATGACATTTCCTGTGCACAAGAAGGATCCATCCATGCACCAATTACGGCAGCAGCTATG
 
. : . : . : . : . : . :
JMSF028P05+ AGCAATATATTCAAATTCCTTCTGAGATTTGAAATTGGGAGATCAGAGCAGCACTGATGA
JMSF013N19+ AGCAATATATTCAAATTCCTTCTGAGATTTGAAATTGGGAGATCAGAGCAGCACTGATGA
JMSF017M07+ AGCAATATATTCAAATTCCTTCTGAGATTTGAAATTGGGAGATCAGAGCAGCACTGATGA
JMSF029J09+ AGCAATATATTCAAATTCCTTCTGAGATTTGAAATTGGGAGATCAGAGCAGCACTGATGA
                      ____________________________________________________________
consensus AGCAATATATTCAAATTCCTTCTGAGATTTGAAATTGGGAGATCAGAGCAGCACTGATGA
 
. : . : . : . : . : . :
JMSF028P05+ TATATATATCTCCAGACAGAACCAAATTAAAGGCTTTTGTATGGTAGCTAGAGACTGGAA
JMSF013N19+ TATATATATCTCCAGACAGAACCAAATTAAAGGCTTTTGTATGGTAGCTAGAGACTGGAA
JMSF017M07+ TATATATATCTCCAGACAGAACCAAATTAAAGGCTTTTGTATGGTAGCTAGAGACTGGAA
JMSF029J09+ TATATATATCTCCAGACAGAACCAAATTAAAGGCTTTTGTATGGTAGCTAGAGACTGGAA
                      ____________________________________________________________
consensus TATATATATCTCCAGACAGAACCAAATTAAAGGCTTTTGTATGGTAGCTAGAGACTGGAA
 
. : . : . : . : . : . :
JMSF028P05+ ACACTGTATGTATATATAGAGAGAGAGAGAGTGAGGGGTAGCGGCCGACAGTGTGAAACA
JMSF013N19+ ACACTGTATGTATATATAGAGAGAGAGAGAGTGAGGGGTAGCGGCCGACAGTGTGAAACA
JMSF017M07+ ACACTGTATGTATATATAGAGAGAGAGAGAGTGAGGGGTAGCGGCCGACAGTGTGAAACA
JMSF029J09+ ACACTGTATGTATATATAGAGAGAGAGAGAGTGAGGGGTAGCGGCCGACAGTGTGAAACA
                      ____________________________________________________________
consensus ACACTGTATGTATATATAGAGAGAGAGAGAGTGAGGGGTAGCGGCCGACAGTGTGAAACA
 
. : . : . : . : . : . :
JMSF028P05+ AAGGGGTACTGAATTCAAT
JMSF013N19+ AAGGGGTACTGAATTCAATTCAAAACAAACCAAATGTCAAAGAAGATATATATATAATAC
JMSF017M07+ AAGGGGTACTGAATTCAATTCAAAACAAACCAAATGTCAAAGAAGATATATATATAATAC
JMSF029J09+ AAGGGGTACTGAATTCAATTCAAAACAAACCAAATGTCAAAGAAGATATATATATAATAC
                      ____________________________________________________________
consensus AAGGGGTACTGAATTCAATTCAAAACAAACCAAATGTCAAAGAAGATATATATATAATAC
 
. : . : . : . : . : . :
JMSF013N19+ ATGCAGATAAGATACTAAGGTGAAGGGAAGAAGCAAACTCAAGTTAAAGGCAACTTCTC
JMSF017M07+ ATGCAGATAAGATACTAAGGTGAAGGGAAGAAGCAAACTCAAGTTAAAGGCAACTTCTC
JMSF029J09+ ATGCAGATAAGATACTAAGGTGAAGGGAAGAAGCAAACTCAAGTTAAAGGCAACTTCTCC
                      ____________________________________________________________
consensus ATGCAGATAAGATACTAAGGTGAAGGGAAGAAGCAAACTCAAGTTAAAGGCAACTTCTCC