Contig 009385:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001N12Sequence278009385 (2)745017044ref|XP_009801763.1|1e-60PREDICTED: long chain base biosynthesis protein 1-like [Nicotiana sylvestris]
JMSF028H23Sequence627009385 (2)683021486gb|ACD75598.1|2e-42phototropin 2 [Verbena perennis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF001N12- GGGACGAAATTAGAAAGAGAAAATCTGA
                      ____________________________________________________________
consensus GGGACGAAATTAGAAAGAGAAAATCTGA
 
. : . : . : . : . : . :
JMSF001N12- GTAGTCTAGAACGGAAGGGGCGGCTCTCTATTGCTTCACGCGGCATTAAGTTTCTCCATC
                      ____________________________________________________________
consensus GTAGTCTAGAACGGAAGGGGCGGCTCTCTATTGCTTCACGCGGCATTAAGTTTCTCCATC
 
. : . : . : . : . : . :
JMSF001N12- AGCGTGAGTTCCAGCTCCTCATCACCTTCAACCTTCCGCAGCTACGCAATCTACGCTCCT
JMSF028H23+ AGCGTGAGTTCCAGCTCCTCATCATCTTCAACCTTCTGCAGCTACGCAATCTGCGCTTCT
                      ____________________________________________________________
consensus AGCGTGAGTTCCAGCTCCTCATCATCTTCAACCTTCTGCAGCTACGCAATCTGCGCTTCT
 
. : . : . : . : . : . :
JMSF001N12- ACATCTCAAGATTCAAGCTCTTCCGTGCC
JMSF028H23+ ACATCTCAAGATTCAAGCTCTTCCGTGCCACTCTGTCTCTCCCTCCGCACTCCGGCAGTC
                      ____________________________________________________________
consensus ACATCTCAAGATTCAAGCTCTTCCGTGCCACTCTGTCTCTCCCTCCGCACTCCGGCAGTC
 
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JMSF028H23+ CGCCCTCGTCAGTCGTCTCTCGTCTCTCACCGCCTCACGCCCTTCGCCCTTGCTCGGTCG
                      ____________________________________________________________
consensus CGCCCTCGTCAGTCGTCTCTCGTCTCTCACCGCCTCACGCCCTTCGCCCTTGCTCGGTCG
 
. : . : . : . : . : . :
JMSF028H23+ CTCCTCACATCCTCAGACGGTCAGCGACTCACCGGCGACCGTACGGGACTCAGCGACTGC
                      ____________________________________________________________
consensus CTCCTCACATCCTCAGACGGTCAGCGACTCACCGGCGACCGTACGGGACTCAGCGACTGC
 
. : . : . : . : . : . :
JMSF028H23+ AACTCCACTCCCTCAAGGTAAATTTTTACATATTAAAATTAAAATGAATTTCATACATTA
                      ____________________________________________________________
consensus AACTCCACTCCCTCAAGGTAAATTTTTACATATTAAAATTAAAATGAATTTCATACATTA
 
. : . : . : . : . : . :
JMSF028H23+ TATATGCTGGATTTTATGCGAATATATGGATCTGGCCAGCAGTCACCTTCCACTAAAAGC
                      ____________________________________________________________
consensus TATATGCTGGATTTTATGCGAATATATGGATCTGGCCAGCAGTCACCTTCCACTAAAAGC
 
. : . : . : . : . : . :
JMSF028H23+ TTCAGGTTCCAGCGGAGCTTGCAAACACCTTTAGTCGGTTGGGAGCATTAGAGTCCAAAC
                      ____________________________________________________________
consensus TTCAGGTTCCAGCGGAGCTTGCAAACACCTTTAGTCGGTTGGGAGCATTAGAGTCCAAAC
 
. : . : . : . : . : . :
JMSF028H23+ GGCACCGAGAAGGAAGAGTAGCAGAGGCAGGGAGGCGCACGACGAAGTCACGTAGGGTGG
                      ____________________________________________________________
consensus GGCACCGAGAAGGAAGAGTAGCAGAGGCAGGGAGGCGCACGACGAAGTCACGTAGGGTGG
 
. : . : . : . : . : . :
JMSF028H23+ CTTTGCGGTGGGAGTGTGGGGAGAAGGCGGGATTGGGTGGGCAGAAACAGGAAGACGCCC
                      ____________________________________________________________
consensus CTTTGCGGTGGGAGTGTGGGGAGAAGGCGGGATTGGGTGGGCAGAAACAGGAAGACGCCC