clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF037J07 | Sequence | 537 | 009370 (3) | ref|XP_009771803.1| | 1e-61 | PREDICTED: 5-epi-aristolochene synthase-like, partial [Nicotiana sylvestris] | 766 | 006905 (3) | ref|XP_009766331.1| | 6e-70 | PREDICTED: 5-epi-aristolochene synthase 2-like [Nicotiana sylvestris] |
JMSF027G11 | Sequence | 695 | 009370 (3) | ref|XP_009771803.1| | 2e-61 | PREDICTED: 5-epi-aristolochene synthase-like, partial [Nicotiana sylvestris] | 818 | 006905 (3) | ref|XP_009766331.1| | 6e-81 | PREDICTED: 5-epi-aristolochene synthase 2-like [Nicotiana sylvestris] |
JMSF034A08 | Sequence | 693 | 009370 (3) | ref|XP_009771803.1| | 7e-61 | PREDICTED: 5-epi-aristolochene synthase-like, partial [Nicotiana sylvestris] | 775 | 006905 (3) | ref|XP_009766331.1| | 8e-81 | PREDICTED: 5-epi-aristolochene synthase 2-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF034A08+ AAATGAGTTCTTGAAAATGTATAAGCTTCCTTT
JMFF037J07+ CTTGAAAAGGTATAAGCTTCCTTT
JMSF027G11+ CTAAATGAGTTCTTGAAAATGTATAAGCTTCCTTT
____________________________________________________________
consensus CTAAATGAGTTCTTGAAAATGTATAAGCTTCCTTT
. : . : . : . : . : . :
JMSF034A08+ AAGATGTCATCTTTATGTCCATTCATGTGAGATGCTTCATATAAGTTCAACAAACCCTTG
JMFF037J07+ AAGATGTCATCTTTATGTCCATCCATGTGAGATGCTTCATATAAGTTCAACAATCCCTTG
JMSF027G11+ AAGATGTCATCTTTATGTCCATTCATGTGAGATGCTTCATATAAGTTCAACAAACCCTTG
____________________________________________________________
consensus AAGATGTCATCTTTATGTCCATTCATGTGAGATGCTTCATATAAGTTCAACAAACCCTTG
. : . : . : . : . : . :
JMSF034A08+ ATATCTCTGACAAGATTATTTCTGAATTTTCTATTCTCTTGAAAGCTTTCAAATATTCCT
JMFF037J07+ ATATCTCTGGAAAGATTGTTTCTGAATTTTCCATTCTCTTGAAAATTTTCAAAGATTCCT
JMSF027G11+ ATATCTCTGACAAGATTATTTCTGAATTTTCTATTCTCTTGAAAGCTTTCAAATATTCCT
____________________________________________________________
consensus ATATCTCTGACAAGATTATTTCTGAATTTTCTATTCTCTTGAAAGCTTTCAAATATTCCT
. : . : . : . : . : . :
JMSF034A08+ GAAGAGATGTTGTAGCCATGTTGCCTAAGTAATCGAAACATAAGTGCACAAGTGCACAAA
JMFF037J07+ GAAGAGATGTTGTAGCCATGTTGCCTAAGTAATCGAAACATAAGTGCACAAGTGCACAAA
JMSF027G11+ GAAGAGATGTTGTAGCCATGTTGCCTAAGTAATCGAAACATAAGTGCACAAGTGCACAAA
____________________________________________________________
consensus GAAGAGATGTTGTAGCCATGTTGCCTAAGTAATCGAAACATAAGTGCACAAGTGCACAAA
. : . : . : . : . : . :
JMSF034A08+ TCATCTCCATGAAATTTGAGATTGGCATTGTAAATCTCTTTCAATATCTCATCAATCTCA
JMFF037J07+ TCATCTCCATGAAATTTGAGATTGGCATTGTATATCTCTTTCAACATCTCATCAATCTCA
JMSF027G11+ TCATCTCCATGAAATTTGAGATTGGCATTGTAAATCTCTTTCAATATCTCATCAATCTCA
____________________________________________________________
consensus TCATCTCCATGAAATTTGAGATTGGCATTGTAAATCTCTTTCAATATCTCATCAATCTCA
. : . : . : . : . : . :
JMSF034A08+ CTGTGAAAGTGATATGAAATGCCGATACGTTCAATGATGTCAATAAAGTTGAGTTTTTCA
JMFF037J07+ CTCTGAAAGTGATATGAAATGCCGAGACGTTCAATGGTGTCAATAAAGTTGAGTTTTTCA
JMSF027G11+ CTGTGAAAGTGATATGAAATGCCGATACGTTCAATGATGTCAATAAAGTTGAGTTTTTCA
____________________________________________________________
consensus CTGTGAAAGTGATATGAAATGCCGATACGTTCAATGATGTCAATAAAGTTGAGTTTTTCA
. : . : . : . : . : . :
JMSF034A08+ GCCAGCTTGGAGCTCCTAATACGTACTAGCATGCTCCTCACTTGTTCTTTCAACACCTCA
JMFF037J07+ GCCAGCTTGGAGCTCCTAATACGTACCAGCATGCTCCTCACTCGTTCTTTCAACACCTCA
JMSF027G11+ GCCAGCTTGGAGCTCCTAATACGTACTAGCATGCTCCTCACTTGTTCTTTCAACACCTCA
____________________________________________________________
consensus GCCAGCTTGGAGCTCCTAATACGTACTAGCATGCTCCTCACTTGTTCTTTCAACACCTCA
. : . : . : . : . : . :
JMSF034A08+ ATCTCTTGTGCATACCTTTTTGCAACTTCATTATCGAAGACGAAGTATCGGAATTCATCA
JMFF037J07+ ATCTCTTGTGCATACCTTTTTGCAACTTCATTATCGAAGACGAAGTATCGGAATTCATCA
JMSF027G11+ ATCTCTTGTGCATACCTTTTTGCAACTTCATTATCGAAGACGAAGTATCGGAATTCATCA
____________________________________________________________
consensus ATCTCTTGTGCATACCTTTTTGCAACTTCATTATCGAAGACGAAGTATCGGAATTCATCA
. : . : . : . : . : . :
JMSF034A08+ CCCCACAGGCTTGGGGAGAATTTTGTTACTGCTGGACGGACAACCTCGTTGCTTGTCGCC
JMFF037J07+ CCCCACAGGCTTGGGGAGAATTTCGTGACAGGTGGACGGACAACCTGGTTGCTTGTCGCC
JMSF027G11+ CCCCACAGGCTTGGGGAGAATTTTGTTACTGCTGGACGGACAACCTCGTTGCTTGTCGCC
____________________________________________________________
consensus CCCCACAGGCTTGGGGAGAATTTTGTTACTGCTGGACGGACAACCTCGTTGCTTGTCGCC
. : . : . : . : . : . :
JMSF034A08+ ATTTCTAGGAATTTTGGGTATTTTGTTTCTTGTTTTAGTAGTGGGATTTTTTAAGGTTTT
JMFF037J07+ ATTTCTAGGA
JMSF027G11+ ATTTCTAGGAATTTTGGGTATTTTGTTTCTTGTTTTAGTAGTGGGATTTTTTAAGGTTTT
____________________________________________________________
consensus ATTTCTAGGAATTTTGGGTATTTTGTTTCTTGTTTTAGTAGTGGGATTTTTTAAGGTTTT
. : . : . : . : . : . :
JMSF034A08+ TGTTGGAGTAATGAGATTTTGGAGTAGAAATTTCCTTTAAATGGCAGGACAAAGTGTATG
JMSF027G11+ TGTTGGAGTAATGAGATTTTGGAGTAGAAATTTCCTTTAAATGGCAGGACAAAGTGTATG
____________________________________________________________
consensus TGTTGGAGTAATGAGATTTTGGAGTAGAAATTTCCTTTAAATGGCAGGACAAAGTGTATG
. : . : . : . : . : . :
JMSF034A08+ TTCTACACCACCTAACTGATTTTATCATTTGAAATCTATTGGGACAATAGTCTCCATCCC
JMSF027G11+ TTCTACACCACCTAACTGATTTTATCATTTGAAATCTATTGGGACAATAGTCTCCATCCC
____________________________________________________________
consensus TTCTACACCACCTAACTGATTTTATCATTTGAAATCTATTGGGACAATAGTCTCCATCCC