| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF027M08 | Sequence | 760 | 009351 (6) | ref|XP_009600588.1| | 4e-101 | PREDICTED: ras-related protein RABE1c-like [Nicotiana tomentosiformis] ref|XP_00 | |||||
| JMSF022J20 | Sequence | 664 | 009351 (6) | ref|XP_003590524.1| | 2e-95 | Ras-like protein [Medicago truncatula] gb|KEH42355.1| RAB GTPase-like protein A5 | 778 | 009351 (6) | ref|XP_009600588.1| | 2e-106 | PREDICTED: ras-related protein RABE1c-like [Nicotiana tomentosiformis] ref|XP_00 |
| JMSF025K13 | Sequence | 631 | 009351 (6) | ref|XP_010243200.1| | 8e-54 | PREDICTED: ras-related protein RABE1c-like [Nelumbo nucifera] | 767 | 018222 | ref|XP_009630662.1| | 4e-97 | PREDICTED: ras-related protein RABE1c [Nicotiana tomentosiformis] |
| JMSF036B12 | Sequence | 661 | 009351 (6) | ref|XP_010553297.1| | 2e-91 | PREDICTED: ras-related protein RABE1a-like [Tarenaya hassleriana] ref|XP_0105532 | 765 | 009351 (6) | ref|XP_009600588.1| | 1e-96 | PREDICTED: ras-related protein RABE1c-like [Nicotiana tomentosiformis] ref|XP_00 |
This contig is upended
. : . : . : . : . : . :
rJMFF027M08- ATTGTTGGAATTACATG
rJMSF022J20- TATTGTTGGAATTACATG
rJMSF036B12- G
____________________________________________________________
consensus TATTGTTGGAATTACATG
. : . : . : . : . : . :
rJMFF027M08- TTCTTTGTTCTTTCTACATAAAAACAATGGATAATGCCAATGATAAAAGCAAGGGCAGCT
rJMSF022J20- TTCTTTGTTCTTTCTACATAAAAACAATGGATAATGCCAATGATAAAAGCAAGGGCAGCT
rJMSF036B12- TTCTTTGTTCTTTCTACATAAAAACAATGGATAATGCCAATGATAAAAGCAAGGGCAGCT
____________________________________________________________
consensus TTCTTTGTTCTTTCTACATAAAAACAATGGATAATGCCAATGATAAAAGCAAGGGCAGCT
. : . : . : . : . : . :
rJMFF027M08- AGGAAATGAGCAAAACAGTCAGACAACATAATTGACACAACAATCTCCACACATAAAATG
rJMSF022J20- AGGAAATGAGCAAAACAGTCAGACAACATAATTGACACAACAATCTCCACACATAAAATG
rJMSF036B12- AGGAAATGAGCAAAACAGTCAGACAACATAATTGACACAACAATCTCCACACATAAAATG
____________________________________________________________
consensus AGGAAATGAGCAAAACAGTCAGACAACATAATTGACACAACAATCTCCACACATAAAATG
. : . : . : . : . : . :
rJMFF027M08- GTAAAAGAATGGAAGGGCGCTTAAGCATGGACAGCCAGATTTCATCGCAATCAATTTATA
rJMSF022J20- GTAAAAGAATGGAAGGGCGCTTAAGCATGGACAGCCAGATTTCATCGCAATCAATTTATA
rJMSF036B12- GTAAAAGAATGGAAGGGCGCTTAAGCATGGACAGCCAGATTTCATCGCAATCAATTTATA
____________________________________________________________
consensus GTAAAAGAATGGAAGGGCGCTTAAGCATGGACAGCCAGATTTCATCGCAATCAATTTATA
. : . : . : . : . : . :
rJMFF027M08- AGCCAAGCGCTAGAACTACCCATCTGAATGGCCTCATATGATTAGGCACAGCAAGCTGAC
rJMSF022J20- AGCCAAGCGCTAGAACTACCCATCTGAATGGCCTCATATGATTAGGCACAGCAAGCTGAC
rJMSF036B12- AGCCAAGCGCTAGAACTACCCATCTGAATGGCCTCATATGATTAGGCACAGCAAGCTGAC
____________________________________________________________
consensus AGCCAAGCGCTAGAACTACCCATCTGAATGGCCTCATATGATTAGGCACAGCAAGCTGAC
. : . : . : . : . : . :
rJMFF027M08- TTTGCTGCTGGCTGGCCGGCAGCTCCCTGGTCTCCTTGGTTAATCTTGATTGCCTGCGGC
rJMSF022J20- TTTGCTGCTGGCTGGCCGGCAGCTCCCTGGTCTCCTTGGTTAATCTTGATTGCCTGCGGC
rJMSF036B12- TTTGCTGCTGGCTGGCCGGCAGCTCCCTGGTCTCCTTGGTTAATCTTGATTGCCTGCGGC
____________________________________________________________
consensus TTTGCTGCTGGCTGGCCGGCAGCTCCCTGGTCTCCTTGGTTAATCTTGATTGCCTGCGGC
. : . : . : . : . : . :
rJMFF027M08- TCAGCCTTGTTATCAGATTCAGAGAGCCTGTGCTTAATATCTCTTGCAATTGAAAAGAAA
rJMSF022J20- TCAGCCTTGTTATCAGATTCAGAGAGCCTGTGCTTAATATCTCTTGCAATTGAAAAGAAA
rJMSF036B12- TCAGCCTTGTTATCAGATTCAGAGAGCCTGTGCTTAATATCTCTTGCAATTGAAAAGAAA
____________________________________________________________
consensus TCAGCCTTGTTATCAGATTCAGAGAGCCTGTGCTTAATATCTCTTGCAATTGAAAAGAAA
. : . : . : . : . : . :
rJMFF027M08- ACCTCCTCCACATTCATGTTTGTTTTTGCACTAGTTTCAAAGAACTTGATCCCATACTCA
rJMSF022J20- ACCTCCTCCACATTCATGTTTGTTTTTGCACTAGTTTCAAAGAACTTGATCCCATACTCA
rJMSF036B12- ACCTCCTCCACATTCATGTTTGTTTTTGCACTAGTTTCAAAGAACTTGATCCCATACTCA
JMSF036B12+ TTTTGCACTAGTTTCAAAGAACTTGATCCCATACTCA
JMSF022J20+ TTCATGTTTGTTTTTGCACTAGTTTCAAAGAACTTGATCCCATACTCA
____________________________________________________________
consensus ACCTCCTCCACATTCATGTTTGTTTTTGCACTAGTTTCAAAGAACTTGATCCCATACTCA
. : . : . : . : . : . :
rJMFF027M08- TCAGCAAGAGCTTGACCCTTAGAGGTTGGCACAGCCCTTTTGCTTTCATCCATATCAGCC
rJMSF022J20- TCAGCAAGAGCTTGACCCTTAGAGGTTGGCACAGCCCTTTTGCTTTCATCCATATCAGCC
rJMSF036B12- TCAGCAAGAGCTTGACCCTTAGAGGTTGGCACAGCCCTTTTGCTTTCATCCATATCAGCC
JMSF036B12+ TCAGCAAGAGCTTGACCCTTAGAGGTTGGCACAGCCCTTTTGCTTTCATCCATATCAGCC
JMSF022J20+ TCAGCAAGAGCTTGACCCTTAGAGGTTGGCACAGCCCTTTTGCTTTCATCCATATCAGCC
____________________________________________________________
consensus TCAGCAAGAGCTTGACCCTTAGAGGTTGGCACAGCCCTTTTGCTTTCATCCATATCAGCC
. : . : . : . : . : . :
rJMFF027M08- TTGTTCCCAACCAAAACCTTGTTGACATTATCAGAAGCATGTTGCTCTATGTTGCGGATC
rJMSF022J20- TTGTTCCCAACCAAAACCTTGTTGACATTATCAGAAGCATGTTGCTCTATGTTGCGGATC
rJMSF036B12- TTGTTCCCAACCAAAACCTTGTTGACATTATCAGAAGCATGTTGCTCTATGTTGCGGATC
JMSF036B12+ TTGTTCCCAACCAAAACCTTGTTGACATTATCAGAAGCATGTTGCTCTATGTTGCGGATC
JMSF022J20+ TTGTTCCCAACCAAAACCTTGTTGACATTATCAGAAGCATGTTGCTCTATGTTGCGGATC
JMSF025K13+ TGTTGCTCTATGTTGCGAATC
____________________________________________________________
consensus TTGTTCCCAACCAAAACCTTGTTGACATTATCAGAAGCATGTTGCTCTATGTTGCGGATC
. : . : . : . : . : . :
rJMFF027M08- CAGTTCCTGATGTTGTTGAAAGATGATTCATCTGTGACATCATACACTAGCAGAATACCC
rJMSF022J20- CAGTTCCTGATGTTGTTGAAAGATGATTCATCTGTGACATCATACACTAGCAGAATACCC
rJMSF036B12- CAGTTCCTGATGTTGTTGAAAGATGATTCATCTGTGACATCATACACTAGCAGAATACCC
JMSF036B12+ CAGTTCCTGATGTTGTTGAAAGATGATTCATCTGTGACATCATACACTAGCAGAATACCC
JMSF022J20+ CAGTTCCTGATGTTGTTGAAAGATGATTCATCTGTGACATCATACACTAGCAGAATACCC
JMSF025K13+ CAGTTCCTGATGTTGTTGAATGAAGATTCATCAGTGACATCATACACCAGCAGAATACCC
____________________________________________________________
consensus CAGTTCCTGATGTTGTTGAAAGATGATTCATCTGTGACATCATACACTAGCAGAATACCC
. : . : . : . : . : . :
rJMFF027M08- ATGGCTCCTCGATAATATGCTGTAGTGATAGTCCTGAACCGCTCTTGACCAGCAGTATCC
rJMSF022J20- ATGGCTCCTCGATAATATGCTGTAGTGATAGTCCTGAACCGCTCTTGACCAGCAGTATCC
rJMSF036B12- ATGGCTCCTCGATAATATGCTGTAGTGATAGTCCTGAACCGCTCTTGACCAGCAGTATCC
JMSF036B12+ ATGGCTCCTCGATAATATGCTGTAGTGATAGTCCTGAACCGCTCTTGACCAGCAGTATCC
JMSF022J20+ ATGGCTCCTCGATAATATGCTGTAGTGATAGTCCTGAACCGCTCTTGACCAGCAGTATCC
JMSF025K13+ ATAGCTCCTCGATAGTATGCTGTAGTGATAGTCCTGAACCGCTCTTGACCAGCTGTATCC
____________________________________________________________
consensus ATGGCTCCTCGATAATATGCTGTAGTGATAGTCCTGAACCGCTCTTGACCAGCAGTATCC
. : . : . : . : . : . :
rJMFF027M08- CAAATTTGCAACTTGATGCGCTTTCCATCAAGTTCAATTGNTCTTATCTTAAAGTCNATA
rJMSF022J20- CAAATTTGCAACTTGATGCGCTTTCCATCAAGTTCAATTGTTCTTATCTTAAAGTCAATA
rJMSF036B12- CAAATTTGCAACTTGATGCGCTTTCCATCAAGTTCAATTGTTCTTATCTTAAAGTCAATA
JMSF036B12+ CAAATTTGCAACTTGATGCGCTTTCCATCAAGTTCAATTGTTCTTATCTTAAAGTCAATA
JMSF022J20+ CAAATTTGCAACTTGATGCGCTTTCCATCAAGTTCAATTGTTCTTATCTTAAAGTCAATA
JMSF025K13+ CAAATTTGCAACTTGATCCGCTTTCCATCAAGCTCAATTGTTCTTATCTTAAAGTCAATA
____________________________________________________________
consensus CAAATTTGCAACTTGATGCGCTTTCCATCAAGTTCAATTGTTCTTATCTTAAAGTCAATA
. : . : . : . : . : . :
rJMFF027M08- CCAATTGTGGTAATG
rJMSF022J20- CCAATTGTGGTAATGAAACTTGNTGTGAAGGA
rJMSF036B12- CCAATTGTGGTAATGAAACTTGTTGTGAAGGAACCATCTGAGAA
JMSF036B12+ CCAATTGTGGTAATGAAACTTGTTGTGAAGGAACCATCTGAGAACCGCAGAAGCAAACAA
JMSF022J20+ CCAATTGTGGTAATGAAACTTGTTGTGAAGGAACCATCTGAGAACCGCAGAAGCAAACAA
JMSF025K13+ CCAATTGTGGTAATGAAACTTGTTGTGAAGGAACCATCTGAGAACCTCAGAAGCAAGCAA
____________________________________________________________
consensus CCAATTGTGGTAATGAAACTTGTTGTGAAGGAACCATCTGAGAACCGCAGAAGCAAACAA
. : . : . : . : . : . :
JMSF036B12+ CTCTTCCCCACACCGCTATCGCCAATGAGAAGCAGTTTTATAAGAAAATCATAATCCGCC
JMSF022J20+ CTCTTCCCCACACCGCTATCGCCAATGAGAAGCAGTTTTATAAGAAAATCATAATCCGCC
JMSF025K13+ CTCTTTCCCACACCGCTGTCGCCAATGAGGAGCAGCTTTATAAGATAATCATAGTCCGCT
____________________________________________________________
consensus CTCTTCCCCACACCGCTATCGCCAATGAGAAGCAGTTTTATAAGAAAATCATAATCCGCC
. : . : . : . : . : . :
JMSF036B12+ CTAGCCCTAGC
JMSF022J20+ CTAGCCCTAGC
JMSF025K13+ CGAGCCCTAGCCGGTGGAGCTGCCATCCTTTCTCTTCGTTCCTGTACGTATCTATACGAA
____________________________________________________________
consensus CTAGCCCTAGCCGGTGGAGCTGCCATCCTTTCTCTTCGTTCCTGTACGTATCTATACGAA
. : . : . : . : . : . :
JMSF025K13+ TGTGAATCCAATCAAGGATGTATAACCCTAAAAATTCGCCCCTGCAATCAAAGCTGGCGG
____________________________________________________________
consensus TGTGAATCCAATCAAGGATGTATAACCCTAAAAATTCGCCCCTGCAATCAAAGCTGGCGG
. : . : . : . : . : . :
JMSF025K13+ GGAGAGGTGGTGGCGCGCAGGTTAGCAAGGCGTCGGCGACATGGGAGAGTGAAAATGGAA
____________________________________________________________
consensus GGAGAGGTGGTGGCGCGCAGGTTAGCAAGGCGTCGGCGACATGGGAGAGTGAAAATGGAA
. : . : . : . : . : . :
JMSF025K13+ CAAATATCAGATGGTACACATACAAACAATGATCTGCGCAGGCATCTTTGCTCGCTCTCA
____________________________________________________________
consensus CAAATATCAGATGGTACACATACAAACAATGATCTGCGCAGGCATCTTTGCTCGCTCTCA
. : . : . : . : . : . :
JMSF025K13+ ATCTCTCTCTCTCTCTCTGCTTTTCTCGCCCGTTCCGCGTTCGATACGTGTCTACGTGTC
____________________________________________________________
consensus ATCTCTCTCTCTCTCTCTGCTTTTCTCGCCCGTTCCGCGTTCGATACGTGTCTACGTGTC