| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF025G11 | Sequence | 649 | 009346 (3) | ref|XP_006346042.1| | 3e-79 | PREDICTED: uncharacterized protein LOC102581957 isoform X1 [Solanum tuberosum] | 770 | 010077 (2) | ref|XP_009592144.1| | 269 | PREDICTED: uncharacterized protein LOC104089037 [Nicotiana tomentosiformis] ref| |
| JMSF027O18 | Sequence | 667 | 009346 (3) | ref|XP_006346043.1| | 8e-80 | PREDICTED: uncharacterized protein LOC102581957 isoform X2 [Solanum tuberosum] | 771 | 009996 (2) | ref|XP_009592144.1| | 325 | PREDICTED: uncharacterized protein LOC104089037 [Nicotiana tomentosiformis] ref| |
| JMSF044L22 | Sequence | 721 | 009346 (3) | ref|XP_006346042.1| | 2e-100 | PREDICTED: uncharacterized protein LOC102581957 isoform X1 [Solanum tuberosum] | 758 | 010077 (2) | ref|XP_009592144.1| | 342 | PREDICTED: uncharacterized protein LOC104089037 [Nicotiana tomentosiformis] ref| |
This contig is upended
. : . : . : . : . : . :
JMSF044L22+ TCTACATCACA
____________________________________________________________
consensus TCTACATCACA
. : . : . : . : . : . :
JMSF044L22+ CCAAACACCTCCTGGACCCTCTAAAACAGAAGGAAGACATTGTATAGGACTAAGCCATTG
____________________________________________________________
consensus CCAAACACCTCCTGGACCCTCTAAAACAGAAGGAAGACATTGTATAGGACTAAGCCATTG
. : . : . : . : . : . :
JMSF044L22+ TTTGTGAACCTTCCGGGACACAAACACTAGTATTGCTGGAATTTCTGTTAAAACACCGCG
JMSF027O18+ ACCTTCCGGGACACAAACACTAGTANTGCTGGAATTTCTGTTAAAACACCGCG
JMSF025G11+ TCCGGGACACAAACACTAGTATTGCTGGAATTTCTGTTAAAACACCGCG
____________________________________________________________
consensus TTTGTGAACCTTCCGGGACACAAACACTAGTATTGCTGGAATTTCTGTTAAAACACCGCG
. : . : . : . : . : . :
JMSF044L22+ TCGGATACGAAACCCGATTGCAGTGCCAAGACTGTAACAACGCAAAATCTTGCTATGGAA
JMSF027O18+ TCGGATACGAAACCCGATTGCAGTGCCAAGACTGTAACAACGCAAAATCTTGCTATGGAA
JMSF025G11+ TCGGATACGAAACCCGATTGCAGTGCCAAGACTGTAACAACGCAAAATCTTGCTATGGAA
____________________________________________________________
consensus TCGGATACGAAACCCGATTGCAGTGCCAAGACTGTAACAACGCAAAATCTTGCTATGGAA
. : . : . : . : . : . :
JMSF044L22+ AGCCCTTATAGTCATCAAGTCAAGCAAAGTTCTTGCTCGCTGCCCTTCTGGTAATCTGTC
JMSF027O18+ AGCCCTTATAGTCATCAAGTCAAGCAAAGTTCTTGCTCGCTGCCCTTCTGGTAATCTGTC
JMSF025G11+ AGCCCTTATAGTCATCAAGTCAAGCAAAGTTCTTGCTCGCTGCCCTTCTGGTAATCTGTC
____________________________________________________________
consensus AGCCCTTATAGTCATCAAGTCAAGCAAAGTTCTTGCTCGCTGCCCTTCTGGTAATCTGTC
. : . : . : . : . : . :
JMSF044L22+ TTGAGTTTCTGGTTGAACCTCTTTTTGCAGATTTGCAAAATAATTTGCCCTCTCTTCTGC
JMSF027O18+ TTGAGTTTCTGGTTGAACCTCTTTTTGCAGATTTGCAAAATAATTTGCCCTCTCTTCTGC
JMSF025G11+ TTGAGTTTCTGGTTGAACCTCTTTTTGCAGATTTGCAAAATAATTTGCCCTCTCTTCTGC
____________________________________________________________
consensus TTGAGTTTCTGGTTGAACCTCTTTTTGCAGATTTGCAAAATAATTTGCCCTCTCTTCTGC
. : . : . : . : . : . :
JMSF044L22+ ATCATCATTTAATCGACTGGGCCAAGAGAAGTATGCAGCATTACTCTCAGAGTGTTGTCC
JMSF027O18+ ATCATCATTTAATCGACTGGGCCAAGAGAAGTATGCAGCATTACTCTCAGAGTGTTGTCC
JMSF025G11+ ATCATCATTTAATCGACTGGGCCAAGAGAAGTATGCAGCATTACTCTCAGAGTGTTGTCC
____________________________________________________________
consensus ATCATCATTTAATCGACTGGGCCAAGAGAAGTATGCAGCATTACTCTCAGAGTGTTGTCC
. : . : . : . : . : . :
JMSF044L22+ GGCCGATGCATAAGGTTGGAGTGTTGGTGGACTAAATGAAGGCAAATTGGAATGACTGCA
JMSF027O18+ GGCCGATGCATAAGGTTGGAGTGTTGGTGGACTAAATGAAGGCAAATTGGAATGACTGCA
JMSF025G11+ GGCCGATGCATAAGGTTGGAGTGTTGGTGGACTAAATGAAGGCAAATTGGAATGACTGCA
____________________________________________________________
consensus GGCCGATGCATAAGGTTGGAGTGTTGGTGGACTAAATGAAGGCAAATTGGAATGACTGCA
. : . : . : . : . : . :
JMSF044L22+ GCCATATTTTTCAAGGTCCAAAGCTGATTCCTCAGATGGTGTTGAGCCTGAGAAACGGGG
JMSF027O18+ GCCATATTTTTCAAGGTCCAAAGCTGATTCCTCAGATGGTGTTGAGCCTGAGAAACGGGG
JMSF025G11+ GCCATATTTTTCAAGGTCCAAAGCTGATTCCTCAGATGGTGTTGAGCCTGAGAAACGGGG
____________________________________________________________
consensus GCCATATTTTTCAAGGTCCAAAGCTGATTCCTCAGATGGTGTTGAGCCTGAGAAACGGGG
. : . : . : . : . : . :
JMSF044L22+ CCTCATATTTGATCTTGCTCTATCCATCTTCTCACATAGCTACAATGGTGTTGGTTGAAT
JMSF027O18+ CCTCATATTTGATCTTGCTCTATCCATCTTCTCACATAGCTACAATGGTGTTGGTTGAAT
JMSF025G11+ CCTCATATTTGATCTTGCTCTATCCATCTTCTCACATAGCTACAATGGTGTTGGTTGAAT
____________________________________________________________
consensus CCTCATATTTGATCTTGCTCTATCCATCTTCTCACATAGCTACAATGGTGTTGGTTGAAT
. : . : . : . : . : . :
JMSF044L22+ TGGAACTTCAGACCAAGGGTCACAAGAAAAGCAGTTTTCCGGCGAATCTGAAGAACCCAG
JMSF027O18+ TGGAACTTCAGACCAAGGGTCACAAGAAAAGCAGTTTTCCGGCGAATCTGAAGAACCCAG
JMSF025G11+ TGGAACTTCAGACCAAGGGTCACAAGAAAAGCAGTTTTCCGGCGAATCTGAAGAACCCAG
____________________________________________________________
consensus TGGAACTTCAGACCAAGGGTCACAAGAAAAGCAGTTTTCCGGCGAATCTGAAGAACCCAG
. : . : . : . : . : . :
JMSF044L22+ AAGAGTTGGATGTCTGGCCGGCGATGGAGTCTGGACAAGCTTTCCTGGAAAAAGTCAGTG
JMSF027O18+ AAGAGTTGGATGTCTGGCCGGCGATGGAGTCTGGACAAGCTTTCCTGGAAAAAGTCAGTG
JMSF025G11+ AAGAGTTGGATGTCTGGCCGGCGATGGAGTCTGGACAAGCTTTCCTGGAAAAAGTCAGTG
____________________________________________________________
consensus AAGAGTTGGATGTCTGGCCGGCGATGGAGTCTGGACAAGCTTTCCTGGAAAAAGTCAGTG
. : . : . : . : . : . :
JMSF044L22+ GACGGGACGGGGAGAGCAGAAGAGGTTTGCAGAGTTCGATTACTCAATT
JMSF027O18+ GACGGGACGGGGAGAGCAGAAGAGGTTTGCAGAGTTCGATTACTCAATTATTTCGCCC
JMSF025G11+ GACGGGACGGGGAGAGCAGAAGAGGTTTGCAGAGTTCGATTACTCAATTATTTCGCCCCC
____________________________________________________________
consensus GACGGGACGGGGAGAGCAGAAGAGGTTTGCAGAGTTCGATTACTCAATTATTTCGCCCCC