Contig 009338:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010P09Sequence229009338 (4)776012543 (4)ref|XP_010042502.1|5e-94PREDICTED: solanesyl diphosphate synthase 1-like, partial [Eucalyptus grandis]
JMSF016D16Sequence493009338 (4)ref|XP_011098150.1|2e-17PREDICTED: probable solanesyl-diphosphate synthase 3, chloroplastic isoform X1 747012543 (4)ref|XP_010042502.1|8e-96PREDICTED: solanesyl diphosphate synthase 1-like, partial [Eucalyptus grandis]
JMSF024O16Sequence575009338 (4)ref|XP_011098150.1|2e-20PREDICTED: probable solanesyl-diphosphate synthase 3, chloroplastic isoform X1 773012543 (4)ref|XP_010042502.1|2e-93PREDICTED: solanesyl diphosphate synthase 1-like, partial [Eucalyptus grandis]
JMSF035B17Sequence680009338 (4)ref|XP_011098151.1|2e-54PREDICTED: probable solanesyl-diphosphate synthase 3, chloroplastic isoform X2 715012543 (4)ref|XP_010042502.1|9e-92PREDICTED: solanesyl diphosphate synthase 1-like, partial [Eucalyptus grandis]

Alignment

This contig is upended


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JMSF035B17+                                  GAAAACCAAAGCAGGTCTCATCCTTTTCCCACCAGCA
                      ____________________________________________________________
consensus                                    GAAAACCAAAGCAGGTCTCATCCTTTTCCCACCAGCA
 
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JMSF035B17+           CCAAAAATCTGCTCCGCAGCAGACATTAAAACAGGGTTTTCTGCACCAACAATAGACTGT
                      ____________________________________________________________
consensus             CCAAAAATCTGCTCCGCAGCAGACATTAAAACAGGGTTTTCTGCACCAACAATAGACTGT
 
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JMSF035B17+           AAGTTCTTGTTTAGAGTAAGGAGGTCATCAGCAACTGGTCCAAACATATTTGCTAGCAAC
                      ____________________________________________________________
consensus             AAGTTCTTGTTTAGAGTAAGGAGGTCATCAGCAACTGGTCCAAACATATTTGCTAGCAAC
 
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JMSF035B17+           ACAGGGCTTCTGGGCTTTTCCTTCAAATCCAACACAGGAGGAGAAGCAGGTGCAA---CA
JMSF016D16+                                                                     CA
JMSF024O16+                                    AATCCAACACAGGAGGAGAAGCAGGTGCAACTGCA
                      ____________________________________________________________
consensus             ACAGGGCTTCTGGGCTTTTCCTTCAAATCCAACACAGGAGGAGAAGCAGGTGCAACTGCA
 
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JMSF035B17+           TTAACCAGGCCGCCGGAAGTCTCAGTGCAAAACACCCGGCAGTGGCCGATATCACGGCGG
JMSF016D16+           TTAACCAGGCCGCCGGAAGTCTCAGTGCAAAACACCCGGCAGTGGCCGATATCACGGCGG
JMSF024O16+           TTAACCAGGCCGCCGGAAGTCTCAGTGCAAAACACCCGGCAGTGGCCGATATCACGGCGG
                      ____________________________________________________________
consensus             TTAACCAGGCCGCCGGAAGTCTCAGTGCAAAACACCCGGCAGTGGCCGATATCACGGCGG
 
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JMSF035B17+           CAACATAGCAGTTTCCGAGCATTGAAGCCTCCTCTGCTAACATTCCTAAACACACACTTA
JMSF016D16+           CAACATAGCAGTTTCCGAGCATTGAAGCCTCCTCTGCTAACATTCCTAAACACACACTTA
JMSF024O16+           CAACATAGCAGTTTCCGAGCATTGAAGCCTCCTCTGCTAACATTCCTAAACACACACTTA
                      ____________________________________________________________
consensus             CAACATAGCAGTTTCCGAGCATTGAAGCCTCCTCTGCTAACATTCCTAAACACACACTTA
 
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JMSF010P09+                                          AAGAACACCCAGCAGCCCCAAAGTCCAAT
JMSF035B17+           GTCACCTTTCTCACGTCAATGGCGGCATTTGAAGAACACCCAGCAGCCCCAAAGTCCAAT
JMSF016D16+           GTCACCTTTCTCACGTCAATGGCGGCATTTGAAGAACACCCAGCAGCCCCAAAGTCCAAT
JMSF024O16+           GTCACCTTTCTCACGTCAATGGCGGCATTTGAAGAACACCCAGCAGCCCCAAAGTCCAAT
                      ____________________________________________________________
consensus             GTCACCTTTCTCACGTCAATGGCGGCATTTGAAGAACACCCAGCAGCCCCAAAGTCCAAT
 
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JMSF010P09+           CTACTTCTTCCAAACTCAAGATTATGGTAGGTCACTGACATCATCCTCAACTATGCTGGG
JMSF035B17+           CTACTTCTTCCAAACTCAAGATTATGGTAGGTCACTGACATCATCCTCAACTATGCTGGG
JMSF016D16+           CTACTTCTTCCAAACTCAAGATTATGGTAGGTCACTGACATCATCCTCAACTATGCTGGG
JMSF024O16+           CTACTTCTTCCAAACTCAAGATTATGGTAGGTCACTGACATCATCCTCAACTATGCTGGG
                      ____________________________________________________________
consensus             CTACTTCTTCCAAACTCAAGATTATGGTAGGTCACTGACATCATCCTCAACTATGCTGGG
 
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JMSF010P09+           AACACCCACCGAGCAAAATTGCAAAATATTTCCCTCAAATCAAGAACCCAGTTCAGAAAG
JMSF035B17+           AACACCCACCGAGCAAAATTGCAAAATATTTCCCTCAAATCAAGAACCCAGTTCAGAAAG
JMSF016D16+           AACACCCACCGAGCAAAATTGCAAAATATTTCCCTCAAATCAAGAACCCAGTTCAGAAAG
JMSF024O16+           AACACCCACCGAGCAAAATTGCAAAATATTTCCCTCAAATCAAGAACCCAGTTCAGAAAG
                      ____________________________________________________________
consensus             AACACCCACCGAGCAAAATTGCAAAATATTTCCCTCAAATCAAGAACCCAGTTCAGAAAG
 
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JMSF010P09+           TTGCTCAATTTCAAAAATTCGCCGGCAAAAGCACAATTCTTGAATCGTGAAAGTTCAAAT
JMSF035B17+           TTGCTCAATTTCAAAAATTCGCCGGCAAAAGCACAATTCTTGAATCGTGAAAGTTCAAAT
JMSF016D16+           TTGCTCAATTTCAAAAATTCGCCGGCAAAAGCACAATTCTTGAATCGTGAAAGTTCAAAT
JMSF024O16+           TTGCTCAATTTCAAAAATTCGCCGGCAAAAGCACAATTCTTGAATCGTGAAAGTTCAAAT
                      ____________________________________________________________
consensus             TTGCTCAATTTCAAAAATTCGCCGGCAAAAGCACAATTCTTGAATCGTGAAAGTTCAAAT
 
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JMSF010P09+           CTTGTGTGTGAAGAGCAGC                                         
JMSF035B17+           CTTGTGTGTGAAGAGCAGCAAGAACTGAACCCAAGCTGGTGCTGCTCAGAGAAAGGAGAG
JMSF016D16+           CTTGTGTGTGAAGAGCAGCAAGAACTGAACCCAAGCTGGTGCTGCTCAGAGAAAGGAGAG
JMSF024O16+           CTTGTGTGTGAAGAGCAGCAAGAACTGAACCCAAGCTGGTGCTGCTCAGAGAAAGGAGAG
                      ____________________________________________________________
consensus             CTTGTGTGTGAAGAGCAGCAAGAACTGAACCCAAGCTGGTGCTGCTCAGAGAAAGGAGAG
 
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JMSF035B17+           GAGAAGTAGAAGAGAAACTCTACTTCGCAACAGGAACTGTCAAGC               
JMSF016D16+           GAGAAGTAGAAGAGAAACTCTACTTCGCAACAGGAACTGTCAAGC               
JMSF024O16+           GAGAAGTAGAAGAGAAACTCTACTTCGCAACAGGAACTGTCAAGCAGCCACTGGGTGGAT
                      ____________________________________________________________
consensus             GAGAAGTAGAAGAGAAACTCTACTTCGCAACAGGAACTGTCAAGCAGCCACTGGGTGGAT
 
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JMSF024O16+           CAAGAAAGACCACAATAAATATGATTTCTTGGATTTGATTTCATCAATTTTTTAGACCCA
                      ____________________________________________________________
consensus             CAAGAAAGACCACAATAAATATGATTTCTTGGATTTGATTTCATCAATTTTTTAGACCCA