clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF022I05 | Sequence | 675 | 009321 (2) | sp|Q40593.1|VDE_TOBAC | 6e-34 | RecName: Full=Violaxanthin de-epoxidase, chloroplastic; Flags: Precursor [Nicot | 775 | 001343 (5) | ref|XP_009607573.1| | 4e-93 | PREDICTED: violaxanthin de-epoxidase, chloroplastic [Nicotiana tomentosiformis] |
JMSF027C08 | Sequence | 651 | 009321 (2) | gb|AFP57681.1| | 2e-52 | violaxanthin de-epoxidase [Nicotiana tabacum] | 798 | 001343 (5) | gb|AFP57681.1| | 3e-46 | violaxanthin de-epoxidase [Nicotiana tabacum] |
This contig is upended
. : . : . : . : . : . :
JMSF027C08+ TTCAAACAAATCACCGC
____________________________________________________________
consensus TTCAAACAAATCACCGC
. : . : . : . : . : . :
JMSF027C08+ ACTTTATCTGGCATTCTGTTTCGTCAGGTCTGTTATTGCAAGTCTGGAGACAAGCAACAT
JMSF022I05+ GAGACAAGCAACAT
____________________________________________________________
consensus ACTTTATCTGGCATTCTGTTTCGTCAGGTCTGTTATTGCAAGTCTGGAGACAAGCAACAT
. : . : . : . : . : . :
JMSF027C08+ TGGCTGCACATGAAGGGTTTGCAATACATTTGGCAAGCTCCAACCTGCATTCTTTGAGTA
JMSF022I05+ NGGCTGCACATGAAGGGTTTGCAATACATTTGGCAAGCTCCAACCTGCATTCTTTGAGTA
____________________________________________________________
consensus TGGCTGCACATGAAGGGTTTGCAATACATTTGGCAAGCTCCAACCTGCATTCTTTGAGTA
. : . : . : . : . : . :
JMSF027C08+ AGCAAGTACAAGTTTTAAGAGCATCCACTGCATCGGCCTGTGGAATCACCATTAAGACAA
JMSF022I05+ AGCAAGTACAAGTTTTAAGAGCATCCACTGCATCGGCCTGTGGAATCACCATTAAGACAA
____________________________________________________________
consensus AGCAAGTACAAGTTTTAAGAGCATCCACTGCATCGGCCTGTGGAATCACCATTAAGACAA
. : . : . : . : . : . :
JMSF027C08+ ATGCAGCTACGATAGCAGTTTGGGCAAAGTGGCTCCACTTCCTACCAATGATCAAGGGTA
JMSF022I05+ ATGCAGCTACGATAGCAGTTTGGGCAAAGTGGCTCCACTTCCTACCAATGATCAAGGGTA
____________________________________________________________
consensus ATGCAGCTACGATAGCAGTTTGGGCAAAGTGGCTCCACTTCCTACCAATGATCAAGGGTA
. : . : . : . : . : . :
JMSF027C08+ ATGCCTTCCAGTATTTGCATATTTCCTTATACATATCCATGTTATTCTTGCTTGTCGAAG
JMSF022I05+ ATGCCTTCCAGTATTTGCATATTTCCTTATACATATCCATGTTATTCTTGCTTGTCGAAG
____________________________________________________________
consensus ATGCCTTCCAGTATTTGCATATTTCCTTATACATATCCATGTTATTCTTGCTTGTCGAAG
. : . : . : . : . : . :
JMSF027C08+ AGCTATTCTCTTTTCTAAGTAAAGGTGAGTCTGGGCATTTACGGCATCTAGGACCCAATG
JMSF022I05+ AGCTATTCTCTTTTCTAAGTAAAGGTGAGTCTGGGCATTTACGGCATCTAGGACCCAATG
____________________________________________________________
consensus AGCTATTCTCTTTTCTAAGTAAAGGTGAGTCTGGGCATTTACGGCATCTAGGACCCAATG
. : . : . : . : . : . :
JMSF027C08+ CACCGCATATCTTAGGAGCTTTAAGAAACTTCAGGTGTCTGGGTCTCCATCTATTTGGCA
JMSF022I05+ CACCGCATATCTTAGGAGCTTTAAGAAACTTCAGGTGTCTGGGTCTCCATCTATTTGGCA
____________________________________________________________
consensus CACCGCATATCTTAGGAGCTTTAAGAAACTTCAGGTGTCTGGGTCTCCATCTATTTGGCA
. : . : . : . : . : . :
JMSF027C08+ AGAATTTCACTATTACTAGACTCTCACAGAAGTCACCTGTGGTCCAGCTGCACTTATTAT
JMSF022I05+ AGAATTTCACTATTACTAGACTCTCACAGAAGTCACCTGTGGTCCAGCTGCACTTATTAT
____________________________________________________________
consensus AGAATTTCACTATTACTAGACTCTCACAGAAGTCACCTGTGGTCCAGCTGCACTTATTAT
. : . : . : . : . : . :
JMSF027C08+ CACTCAGAACCTGCGATCCAATACGATAATGGATGGCCTGATTGGCAAGAAAATGCGATT
JMSF022I05+ CACTCAGAACCTGCGATCCAATACGATAATGGATGGCCTGATTGGCAAGAAAATGCGATT
____________________________________________________________
consensus CACTCAGAACCTGCGATCCAATACGATAATGGATGGCCTGATTGGCAAGAAAATGCGATT
. : . : . : . : . : . :
JMSF027C08+ GTAAAGCAAAGGCCATTCTTCAACCTGG
JMSF022I05+ GTAAAGCAAAGGCCATTCTTCAACCTGGAGACAGCCAATAGCAACCTGGGATTAAAGTGA
____________________________________________________________
consensus GTAAAGCAAAGGCCATTCTTCAACCTGGAGACAGCCAATAGCAACCTGGGATTAAAGTGA
. : . : . : . : . : . :
JMSF022I05+ GCAATGGCGCAGGGCAATGCGGGTAAAGCATAGAATTCGGGCAGAATGAAGAGCAAAAGG
____________________________________________________________
consensus GCAATGGCGCAGGGCAATGCGGGTAAAGCATAGAATTCGGGCAGAATGAAGAGCAAAAGG
. : . : . : . : . : . :
JMSF022I05+ GAGAAAAATGAACGAAGGGCTAAGGAGCTTTCAGCTGGATAACACAATCTTGTGATGGTC
____________________________________________________________
consensus GAGAAAAATGAACGAAGGGCTAAGGAGCTTTCAGCTGGATAACACAATCTTGTGATGGTC