Contig 009308:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020I11Sequence476009308 (2)ref|XP_009798569.1|4e-35PREDICTED: mortality factor 4-like protein 1 isoform X4 [Nicotiana sylvestris]754005670 (3)ref|XP_009798546.1|5e-55PREDICTED: nuA4 complex subunit EAF3 homolog isoform X1 [Nicotiana sylvestris]
JMSF021E15Sequence663009308 (2)ref|XP_009798562.1|4e-66PREDICTED: mortality factor 4-like protein 1 isoform X3 [Nicotiana sylvestris]813005670 (3)ref|XP_009798562.1|4e-80PREDICTED: mortality factor 4-like protein 1 isoform X3 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF021E15+                                                                    TNG
                      ____________________________________________________________
consensus                                                                      TNG
 
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JMSF021E15+           GGAACGTTCGTTTTCATTTCCTCTTTATCCCCATTCAAATCACTGTTTTTTGTATCATCT
                      ____________________________________________________________
consensus             GGAACGTTCGTTTTCATTTCCTCTTTATCCCCATTCAAATCACTGTTTTTTGTATCATCT
 
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JMSF021E15+           TTTTCAATTTTCGGATCAACTGAGGCTTTGGGTTTAGTTTGTGATGAACGCCCTAATTTT
                      ____________________________________________________________
consensus             TTTTCAATTTTCGGATCAACTGAGGCTTTGGGTTTAGTTTGTGATGAACGCCCTAATTTT
 
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JMSF021E15+           GTATTCTTCTCCACTCCCAATTTCTTGTCAAGGGCCTGCTGCTTTATGATATTGTCATCA
                      ____________________________________________________________
consensus             GTATTCTTCTCCACTCCCAATTTCTTGTCAAGGGCCTGCTGCTTTATGATATTGTCATCA
 
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JMSF021E15+           GTAAGTTTCATCAAGCGTTGAGTGCCTACCCATTCATCCCAATTCTTGTTCCAACCCAAG
                      ____________________________________________________________
consensus             GTAAGTTTCATCAAGCGTTGAGTGCCTACCCATTCATCCCAATTCTTGTTCCAACCCAAG
 
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JMFF020I11+                                                            CCTTAGCTTCA
JMSF021E15+           TAATGAACAAAATATCTCCATTCATTCTCTCTAAGCTCAGCTTTTTGGACCTTAGCTTCA
                      ____________________________________________________________
consensus             TAATGAACAAAATATCTCCATTCATTCTCTCTAAGCTCAGCTTTTTGGACCTTAGCTTCA
 
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JMFF020I11+           TAGATGCGAGGGCCATGGTAAGCTAGGACCTTCTCTCCTTCAGAGTAGAGGCTGGAATTC
JMSF021E15+           TAGATGCGAGGGCCATGGTAAGCTAGGACCTTCTCTCCTTCAGAGTAGAGGCTGGAATTC
                      ____________________________________________________________
consensus             TAGATGCGAGGGCCATGGTAAGCTAGGACCTTCTCTCCTTCAGAGTAGAGGCTGGAATTC
 
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JMFF020I11+           GAGTCCGGAACTTCGCCGGACGACTTGTCGCTGTCCGTAGCTGATTCGTCCTTGGAGCTC
JMSF021E15+           GAGTCCGGAACTTCGCCGGACGACTTGTCGCTGTCCGTAGCTGATTCGTCCTTGGAGCTC
                      ____________________________________________________________
consensus             GAGTCCGGAACTTCGCCGGACGACTTGTCGCTGTCCGTAGCTGATTCGTCCTTGGAGCTC
 
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JMFF020I11+           ACCA-TTTTTTTTCTTTTTCCAAATTTCAGAGATTCTTCAACTGATTTTCCTGTTAAACG
JMSF021E15+           ACCATTTTTTTTTCTTTTTCCAAATTTCAGAGATTCTTCAACTGATTTTCCTGTTAAACG
                      ____________________________________________________________
consensus             ACCATTTTTTTTTCTTTTTCCAAATTTCAGAGATTCTTCAACTGATTTTCCTGTTAAACG
 
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JMFF020I11+           GTTGTAGAGAAACTGAAATCTACTTGCTCCGCTGCTTGCTCTTGATTTGATTTGCGTTGT
JMSF021E15+           GTTGTAGAGAAACTGAAATCTACNTGCTCCGCTGCTTGCTCTTGATNTGATNTGCGTTGT
                      ____________________________________________________________
consensus             GTTGTAGAGAAACTGAAATCTACTTGCTCCGCTGCTTGCTCTTGATTTGATTTGCGTTGT
 
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JMFF020I11+           TGAGCTAATCTCCGGCGAAAGTCGCCGCCGAGTGTCGGCTTCTATCGCCGGTTGGAATTA
JMSF021E15+           TGAGCTAATCTCCGGCGAAAGTCGCCGCCGAGTGTCGGCTTCTATCGCCGGTTGGAATTA
                      ____________________________________________________________
consensus             TGAGCTAATCTCCGGCGAAAGTCGCCGCCGAGTGTCGGCTTCTATCGCCGGTTGGAATTA
 
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JMFF020I11+           TATGATGCCGGATCCAAGTGGATCTGTGCATGTGAGTGTACACTGAACAACAACTGT   
JMSF021E15+           TATGATGCCGGATCCAAGTGGATCTGTGCATGTGAGTGTACACTGAACAACAACTGTGCC
                      ____________________________________________________________
consensus             TATGATGCCGGATCCAAGTGGATCTGTGCATGTGAGTGTACACTGAACAACAACTGTGCC