clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF019M21 | Sequence | 504 | 009290 (2) | ref|XP_009608123.1| | 1e-41 | PREDICTED: frataxin, mitochondrial isoform X1 [Nicotiana tomentosiformis] | 752 | 009290 (2) | ref|XP_009788900.1| | 8e-75 | PREDICTED: frataxin, mitochondrial isoform X1 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF019M21- AGCTACAACTAGTGGAGT
____________________________________________________________
consensus AGCTACAACTAGTGGAGT
. : . : . : . : . : . :
rJMSF019M21- CTTTTCAGCATGGTTTCTGTTTCTTTGGTTATTATACAAACAAATTACTCCGTAACAATT
____________________________________________________________
consensus CTTTTCAGCATGGTTTCTGTTTCTTTGGTTATTATACAAACAAATTACTCCGTAACAATT
. : . : . : . : . : . :
rJMSF019M21- ACATAAATTTAGATCAAACCGACGCCCGTTGAGCGGGGGCTCTTTTGGTTATTTTAGTAC
____________________________________________________________
consensus ACATAAATTTAGATCAAACCGACGCCCGTTGAGCGGGGGCTCTTTTGGTTATTTTAGTAC
. : . : . : . : . : . :
rJMSF019M21- AGCAACATATCCTTGTACTCTACCAGGGCCCATGTAACAAGGGCATCTTGTTGGAACCAA
____________________________________________________________
consensus AGCAACATATCCTTGTACTCTACCAGGGCCCATGTAACAAGGGCATCTTGTTGGAACCAA
. : . : . : . : . : . :
rJMSF019M21- GTAACACTGATTGTGGAATTACAGTCCAAGCAAGCCCGGACACACAACCAGGTAGATTGA
____________________________________________________________
consensus GTAACACTGATTGTGGAATTACAGTCCAAGCAAGCCCGGACACACAACCAGGTAGATTGA
. : . : . : . : . : . :
rJMSF019M21- ACATGAAGGTTAGTGATGATGAAGGAAGACAGGGAGGTCGTTGATAACTTAACTTAGTTT
____________________________________________________________
consensus ACATGAAGGTTAGTGATGATGAAGGAAGACAGGGAGGTCGTTGATAACTTAACTTAGTTT
. : . : . : . : . : . :
rJMSF019M21- GATGGGCATCCCGCAGAGGTTTCCCAGTTCTGTTTCTAAAACTTGGTTCAACTTTGCTTT
____________________________________________________________
consensus GATGGGCATCCCGCAGAGGTTTCCCAGTTCTGTTTCTAAAACTTGGTTCAACTTTGCTTT
. : . : . : . : . : . :
rJMSF019M21- GGTTCGCCTGTAAATCCAGGCTTCCGAATTCTGGTCCCAATCAAATCTCGATGGACCACT
JMSF019M21+ CCAATCAAATCTCGATGGACCACT
____________________________________________________________
consensus GGTTCGCCTGTAAATCCAGGCTTCCGAATTCTGGTCCCAATCAAATCTCGATGGACCACT
. : . : . : . : . : . :
rJMSF019M21- CACTGGCGATGACATCCAAATTTGCCTATTAGGTGTTTGTTTGTTTATTACATAGGTTCC
JMSF019M21+ CACNGGCGATGACATCCAAATTTGCCTNTTAGGTGTTTGTTTGTTTATTACATAGGTTCC
____________________________________________________________
consensus CACTGGCGATGACATCCAAATTTGCCTATTAGGTGTTTGTTTGTTTATTACATAGGTTCC
. : . : . : . : . : . :
rJMSF019M21- CAAACTACCAAGCTTCAATGTCAGAACCTCA-TTCCCATAATCAACATCAAAACCATCAA
JMSF019M21+ CAAACTACCAAGCTTCAATGTCAGAACCTCATTTCCCATAATCAACATCAAAACCATCAA
____________________________________________________________
consensus CAAACTACCAAGCTTCAATGTCAGAACCTCATTTCCCATAATCAACATCAAAACCATCAA
. : . : . : . : . : . :
rJMSF019M21- TATCTACTAAATCACCATATTCCTCCAACTTCTCAAGAAGGTCATGGATAGTGGAATTAG
JMSF019M21+ TATCTACTAAATCACCATATTCCTCCAACTTCTCAAGAAGGTCATGGATAGTGGAATTAG
____________________________________________________________
consensus TATCTACTAAATCACCATATTCCTCCAACTTCTCAAGAAGGTCATGGATAGTGGAATTAG
. : . : . : . : . : . :
rJMSF019M21- CAAGTCTGTGATACTCATCTTCTGCCAGCTGCAAACGGTAATCGATGGTGGTCGGACCTT
JMSF019M21+ CAAGTCTGTGATACTCATCTTCTGCCAGCTGCAAACGGTAATCGATGGTGGTCGGACCTT
____________________________________________________________
consensus CAAGTCTGTGATACTCATCTTCTGCCAGCTGCAAACGGTAATCGATGGTGGTCGGACCTT
. : . : . : . : . : . :
rJMSF019M21- GAGATCCTTCATTGAGAGGAGGCGTCTGGGAACAGAAGCTACTAGAAGGGTTAATCACAA
JMSF019M21+ GAGATCCTTCATTGAGAGGAGGCGTCTGGGAACAGAAGCTACTAGAAGGGTTAATCACAA
____________________________________________________________
consensus GAGATCCTTCATTGAGAGGAGGCGTCTGGGAACAGAAGCTACTAGAAGGGTTAATCACAA
. : . : . : . : . : . :
rJMSF019M21- ATGATTTGGAGCTGA
JMSF019M21+ ATGATTTGGAGCTGAAACTCGAAGGTTCTAGAACATAATTATACATAGAAGACAATGATG
____________________________________________________________
consensus ATGATTTGGAGCTGAAACTCGAAGGTTCTAGAACATAATTATACATAGAAGACAATGATG
. : . : . : . : . : . :
JMSF019M21+ AAGAAAACAGATACGACCGTCGTGTTGCAGAGAACGACGGAAGCGGAGGCCTGAAAGCTC
____________________________________________________________
consensus AAGAAAACAGATACGACCGTCGTGTTGCAGAGAACGACGGAAGCGGAGGCCTGAAAGCTC
. : . : . : . : . : . :
JMSF019M21+ TCCATATTGTTCTTCTCAGTAGCAGAAGTTTCTTCGCGGAAGAAGGAGACGCCATTTCTC
____________________________________________________________
consensus TCCATATTGTTCTTCTCAGTAGCAGAAGTTTCTTCGCGGAAGAAGGAGACGCCATTTCTC