Contig 009284:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031P06Sequence644009284 (4)ref|XP_002309560.2|1e-47hypothetical protein POPTR_0006s25880g [Populus trichocarpa] gb|EEE93083.2| hypo699004356 (3)ref|XP_009627765.1|165PREDICTED: uncharacterized protein LOC104118259 [Nicotiana tomentosiformis]
JMSF019A21Sequence429009284 (4)ref|XP_002309560.2|4e-05hypothetical protein POPTR_0006s25880g [Populus trichocarpa] gb|EEE93083.2| hypo786004356 (3)ref|XP_009623066.1|206PREDICTED: uncharacterized protein LOC104114346 [Nicotiana tomentosiformis]
JMSF029C11Sequence666009284 (4)ref|XP_002309560.2|7e-54hypothetical protein POPTR_0006s25880g [Populus trichocarpa] gb|EEE93083.2| hypo750018245ref|XP_009623066.1|169PREDICTED: uncharacterized protein LOC104114346 [Nicotiana tomentosiformis]
JMSF041H10Sequence766009284 (4)ref|XP_002309560.2|4e-70hypothetical protein POPTR_0006s25880g [Populus trichocarpa] gb|EEE93083.2| hypo707004356 (3)emb|CDP16156.1|2e-45unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF041H10+                         GCACAGCCTCCTTTTTCAGCATAGTCTCTTTCTTCCAGGACGCGAC
                      ____________________________________________________________
consensus                           GCACAGCCTCCTTTTTCAGCATAGTCTCTTTCTTCCAGGACGCGAC
 
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JMSF041H10+           ACCTNTGAAGAAAGCCATAGTTGATAAGCCTAAGAAGAGAATAATTAGCAGAACAGTGAC
JMSF029C11+                                                                 AGTGAC
                      ____________________________________________________________
consensus             ACCTNTGAAGAAAGCCATAGTTGATAAGCCTAAGAAGAGAATAATTAGCAGAACAGTGAC
 
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JMSF041H10+           CATCCAGTCAGCCAAAATGACATTGAAAGAAACGCCAATACTAATCCCAAGCATTAGCAT
JMFF031P06+                        AAAATGACATNGAAAGAAACGCCAATACTAATCCCAAGCATTAGCAT
JMSF029C11+           CATCCAGTCAGCCAAAATGACATTGAAAGAAACGCCAATACTAATCCCAAGCATTAGCAT
                      ____________________________________________________________
consensus             CATCCAGTCAGCCAAAATGACATTGAAAGAAACGCCAATACTAATCCCAAGCATTAGCAT
 
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JMSF041H10+           TGGTTGGATGAGCACAGCCAAGTCATAATCAATAATTGGCATCTCCAGTGTAGGATGCCT
JMFF031P06+           TGGTTGGATGAGCACAGCCAAGTCATAATCAATAATTGGCATCTCCAGTGTAGGATGCCT
JMSF029C11+           TGGTTGGATGAGCACAGCCAAGTCATAATCAATAATTGGCATCTCCAGTGTAGGATGCCT
                      ____________________________________________________________
consensus             TGGTTGGATGAGCACAGCCAAGTCATAATCAATAATTGGCATCTCCAGTGTAGGATGCCT
 
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JMSF041H10+           TAGCCTAAGATTACAGTAAACAGTAGAAACCGCAGCTCCTGTGATCATACACTTTGAAAT
JMFF031P06+           TAGCCTAAGATTACAGTAAACAGTAGAAACCGCAGCTCCTGTGATCATACACTTTGAAAT
JMSF029C11+           TAGCCTAAGATTACAGTAAACAGTAGAAACCGCAGCTCCTGTGATCATACACTTTGAAAT
                      ____________________________________________________________
consensus             TAGCCTAAGATTACAGTAAACAGTAGAAACCGCAGCTCCTGTGATCATACACTTTGAAAT
 
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JMSF041H10+           TGCAGTTGCAGATTTGGGGTCAAATCTTAGAATAAGAGTAAGCATGGGCACAAATATGCC
JMFF031P06+           TGCAGTTGCAGATTTGGGGTCAAATCTTAGAATAAGAGTAAGCATGGGCACAAATATGCC
JMSF029C11+           TGCAGTTGCAGATTTGGGGTCAAATCTTAGAATAAGAGTAAGCATGGGCACAAATATGCC
JMSF019A21+                                                              AAATATGCC
                      ____________________________________________________________
consensus             TGCAGTTGCAGATTTGGGGTCAAATCTTAGAATAAGAGTAAGCATGGGCACAAATATGCC
 
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JMSF041H10+           GCCCCCTCCAACACCCCCAACGCTCCCAAATGCTGCCCCCAAGAATCCTATTATGCTGCC
JMFF031P06+           GCCCCCTCCAACACCCCCAACGCTCCCAAATGCTGCCCCCAAGAATCCTATTATGCTGCC
JMSF029C11+           GCCCCCTCCAACACCCCCAACGCTCCCAAATGCTGCCCCCAAGAATCCTATTATGCTGCC
JMSF019A21+           GCCCCNTCCAACACCCCCAACGCTCCCAAATGCTGCCCCCAAGAATCCTATTATGCTGCC
                      ____________________________________________________________
consensus             GCCCCCTCCAACACCCCCAACGCTCCCAAATGCTGCCCCCAAGAATCCTATTATGCTGCC
 
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JMSF041H10+           CACCACAATTTTCCATCCAAATTTCAGTTCCGGCCAAACGTGACTGTGACGGTGACCGGA
JMFF031P06+           CACCACAATTTTCCATCCAAATTTCAGTTCCGGCCAAACGTGACTGTGACGGTGACCGGA
JMSF029C11+           CACCACAATTTTCCATCCAAATTTCAGTTCCGGCCAAACGTGACTGTGACGGTGACCGGA
JMSF019A21+           CACCACAATTTTCCATCCAAATTTCAGTTCCGGCCAAACGTGACTGTGACGGTGACCGGA
                      ____________________________________________________________
consensus             CACCACAATTTTCCATCCAAATTTCAGTTCCGGCCAAACGTGACTGTGACGGTGACCGGA
 
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JMSF041H10+           ATCTTTAGTCTCCCTCATGAGAAACTTTGAGAGGAGGTGATGATGGGCATCTGAATTATT
JMFF031P06+           ATCTTTAGTCTCCCTCATGAGAAACTTTGAGAGGAGGTGATGATGGGCATCTGAATTATT
JMSF029C11+           ATCTTTAGTCTCCCTCATGAGAAACTTTGAGAGGAGGTGATGATGGGCATCTGAATTATT
JMSF019A21+           ATCTTTAGTCTCCCTCATGAGAAACTTTGAGAGGAGGTGATGATGGGCATCTGAATTATT
                      ____________________________________________________________
consensus             ATCTTTAGTCTCCCTCATGAGAAACTTTGAGAGGAGGTGATGATGGGCATCTGAATTATT
 
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JMSF041H10+           GGCATCGCTAAGTTTGATGCTTTGTAGAGCTGCTTCCTTCTTCAAACTCCCACTTTCCTC
JMFF031P06+           GGCATCGCTAAGTTTGATGCTTTGTAGAGCTGCTTCCTTCTTCAAACTCCCACTTTCCTC
JMSF029C11+           GGCATCGCTAAGTTTGATGCTTTGTAGAGCTGCTTCCTTCTTCAAACTCCCACTTTCCTC
JMSF019A21+           GGCATCGCTAAGTTTGATGCTTTGTAGAGCTGCTTCCTTCTTCAAACTCCCACTTTCCTC
                      ____________________________________________________________
consensus             GGCATCGCTAAGTTTGATGCTTTGTAGAGCTGCTTCCTTCTTCAAACTCCCACTTTCCTC
 
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JMSF041H10+           ATCAGCTAAAACCAAAACTAATGAAGCTAAGAGAAAACTCCACCAAATACACATCACTGC
JMFF031P06+           ATCAGCTAAAACCAAAACTAATGAAGCTAAGAGAAAACTCCACCAAATACACATCACTGC
JMSF029C11+           ATCAGCTAAAACCAAAACTAATGAAGCTAAGAGAAAACTCCACCAAATACACATCACTGC
JMSF019A21+           ATCAGCTAAAACCAAAACTAATGAAGCTAAGAGAAAACTCCACCAAATACACATCACTGC
                      ____________________________________________________________
consensus             ATCAGCTAAAACCAAAACTAATGAAGCTAAGAGAAAACTCCACCAAATACACATCACTGC
 
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JMSF041H10+           CCTCACAAACCTCCATTTTCCTCCCGTCATTCAAGCACCTACAGATCAGATTAATTACCT
JMFF031P06+           CCTCACAAACCTCCATTTTCCTCCCGTCATTCAAGCACCTACAGATCAGATTAATTACCT
JMSF029C11+           CCTCACAAACCTCCATTTTCCTCCCGTCATTCAAGCACCTACAGATCAGATTAATTACCT
JMSF019A21+           CCTCACAAACCTCCATTTTCCTCCCGTCATTCAAGCACCTACAGATCAGATTAATTACCT
                      ____________________________________________________________
consensus             CCTCACAAACCTCCATTTTCCTCCCGTCATTCAAGCACCTACAGATCAGATTAATTACCT
 
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JMSF041H10+           AAAACAACCAAAGTCCTATAAAAAAGATATAAAAAAGAAAAATATTCTTGCGCGTAC   
JMFF031P06+           AAAACAACCAAAGTCCTATAAAAAAGATATAAAAAAGAAAAATATTCTTGCGCGTAC   
JMSF029C11+           AAAACAACCAAAGTCCTATAAAAAAGATATAAAAAAGAAAAATATTCTTGCGCGTAC   
JMSF019A21+           AAAACAACCAAAGTCCTATAAAAAAGATATAAAAAAGAAAAATATTCTTGCGCGTACACC
                      ____________________________________________________________
consensus             AAAACAACCAAAGTCCTATAAAAAAGATATAAAAAAGAAAAATATTCTTGCGCGTACACC