Contig 009281:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034C22Sequence496009281 (6)gb|KDP43630.1|2e-75hypothetical protein JCGZ_16917 [Jatropha curcas]
JMSF018J14Sequence570009281 (6)gb|KDP43630.1|8e-96hypothetical protein JCGZ_16917 [Jatropha curcas]774009281 (6)ref|XP_009791062.1|2e-108PREDICTED: mRNA turnover protein 4 homolog [Nicotiana sylvestris]
JMSF034B23Sequence682009281 (6)gb|KDP43630.1|8e-125hypothetical protein JCGZ_16917 [Jatropha curcas]662009281 (6)ref|XP_009791062.1|8e-75PREDICTED: mRNA turnover protein 4 homolog [Nicotiana sylvestris]
JMSF035B23Sequence672012091 (9)gb|EYU42561.1|3e-41hypothetical protein MIMGU_mgv1a002602mg [Erythranthe guttata]628009281 (6)ref|XP_009791062.1|8e-70PREDICTED: mRNA turnover protein 4 homolog [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF034B23- TCACTATGCATTCTTGT
                      ____________________________________________________________
consensus TCACTATGCATTCTTGT
 
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rJMSF035B23- AGGGATCATACAAANNAAGATTACATTTCATCATGTCTAGAGATTTAGCACTCCATATT
rJMSF034B23- AAGGGATCATACAAACAAAGATTACATTTCATCATGTCTAGAGATTTAGCACTCCATATT
rJMSF018J14- AAGATTACATTTCATCATGTCTAGAGATTTAGCACTCCATATT
                      ____________________________________________________________
consensus AAGGGATCATACAAACAAAGATTACATTTCATCATGTCTAGAGATTTAGCACTCCATATT
 
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rJMSF035B23- GCAAACTTAACTGTCAACTCAAAAAGAAAACAATGCCCAAAACTGAGGGGAATGCACCAC
rJMSF034B23- GCAAACTTAACTGTCAACTCAAAAAGAAAACAATGCCCAAAACTGAGGGGAATGCACCAC
rJMSF018J14- GCAAACTTAACTGTCAACTCAAAAAGAAAACAATGCCCAAAACTGAGGGGAATGCACCAC
                      ____________________________________________________________
consensus GCAAACTTAACTGTCAACTCAAAAAGAAAACAATGCCCAAAACTGAGGGGAATGCACCAC
 
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rJMSF035B23- CTGCATTTACCTAATAGAGGAGAACAACTAAACATGCTCCCGATAACATCAATTTGGCTC
rJMSF034B23- CTGCATTTACCTAATAGAGGAGAACAACTAAACATGCTCCCGATAACATCAATTTGGCTC
rJMSF018J14- CTGCATTTACCTAATAGAGGAGAACAACTAAACATGCTCCCGATAACATCAATTTGGCTC
                      ____________________________________________________________
consensus CTGCATTTACCTAATAGAGGAGAACAACTAAACATGCTCCCGATAACATCAATTTGGCTC
 
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rJMSF035B23- AATGCCAGAAGGTGGGAGAGCGTGCTTTCGAGAGAAACCATGTTTAACTTATAGATCCTC
rJMSF034B23- AATGCCAGAAGGTGGGAGAGCGTGCTTTCGAGAGAAACCATGTTTAACTTATAGATCCTC
rJMSF018J14- AATGCCAGAAGGTGGGAGAGCGTGCTTTCGAGAGAAACCATGTTTAACTTATAGATCCTC
                      ____________________________________________________________
consensus AATGCCAGAAGGTGGGAGAGCGTGCTTTCGAGAGAAACCATGTTTAACTTATAGATCCTC
 
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rJMSF035B23- TTTGAATTCCTACGAGGACTCCACATCAGAATCTTCTAAACCTTCTCTATAGAGTTCAGA
rJMSF034B23- TTTGAATTCCTACGAGGACTCCACATCAGAATCTTCTAAACCTTCTCTATAGAGTTCAGA
rJMSF018J14- TTTGAATTCCTACGAGGACTCCACATCAGAATCTTCTAAACCTTCTCTATAGAGTTCAAA
                      ____________________________________________________________
consensus TTTGAATTCCTACGAGGACTCCACATCAGAATCTTCTAAACCTTCTCTATAGAGTTCAGA
 
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rJMSF035B23- TTGTTCAGGGCCCCACCTGCATATTAAATGTAGCTTAAAAGTAGCCATCTTGATGCCGAG
rJMSF034B23- TTGTTCAGGGCCCCACCTGCATATTAAATGTAGCTTAAAAGTAGCCATCTTGATGCCGAG
rJMSF018J14- TTGTTCAGGGCCCCACCTGCATATTAAATGTAGCTTAAAAGTAGCCATCTTGATGCCGAG
JMSF034B23+ TTAAATGTAGCTTAAAAGTAGCCATCTTGATGCCGAG
                      ____________________________________________________________
consensus TTGTTCAGGGCCCCACCTGCATATTAAATGTAGCTTAAAAGTAGCCATCTTGATGCCGAG
 
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rJMSF035B23- CATACGCAGTATACGAGCAGCCTCTGGTGATAAGGGTTTCCCTCCTTCACACACAACATA
rJMSF034B23- CATACGCAGTATACGAGCAGCCTCTGGTGATAAGGGTTTCCCTCCTTCACACACAACATA
rJMSF018J14- CATACGCAGTATACGAGCAGCCTCTGGTGATAAGGGTTTCCCTCCTTCACACACAACATA
JMSF034B23+ CATACGCAGTATACGAGCAGCCTCTGGTGATAAGGGTTTCCCTCCTTCACACACAACATA
                      ____________________________________________________________
consensus CATACGCAGTATACGAGCAGCCTCTGGTGATAAGGGTTTCCCTCCTTCACACACAACATA
 
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rJMSF035B23- GTCTGATACTAGCTCCACAACACCCTTGTTTAACCGGACTGGCATCCCTTGCTTACGCAG
rJMSF034B23- GTCTGATACTAGCTCCACAACACCCTTGTTTAACCGGACTGGCATCCCTTGCTTACGCAG
rJMSF018J14- GTCTGATACTAGCTCCACAACACCCTTGTTTAACCGGACTGGCATCCCTTGCTTACGCAG
JMSF034B23+ GTCTGATACTAGCTCCACAACACCCTTGTTTAACCGGACTGGCATCCCTTGCTTACGCAG
JMSF018J14+ TAACCGGACTGGCATCCCTTGCTTACGCAG
                      ____________________________________________________________
consensus GTCTGATACTAGCTCCACAACACCCTTGTTTAACCGGACTGGCATCCCTTGCTTACGCAG
 
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rJMSF035B23- AAATGGTTCCATCTCATGTGTGAACTGATCAAGAGGACCTTCCTGTAGCTCCACCTTTTC
rJMSF034B23- AAATGGTTCCATCTCATGTGTGAACTGATCAAGAGGACCTTCCTGTAGCTCCACCTTTTC
rJMSF018J14- AAATGGTTCCATCTCATGTGTGAACTGATCAAGAGGACCTTCCTGTAGCTCCACCTTTTC
JMSF034B23+ AAATGGTTCCATCTCATGTGTGAACTGATCAAGAGGACCTTCCTGTAGCTCCACCTTTTC
JMFF034C22+ TGTAGCTCCACCTTTTC
JMSF018J14+ AAATGGTTCCATCTCATGTGTGAACTGATCAAGAGGACCTTCCTGTAGCTCCACCTTTTC
                      ____________________________________________________________
consensus AAATGGTTCCATCTCATGTGTGAACTGATCAAGAGGACCTTCCTGTAGCTCCACCTTTTC
 
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rJMSF035B23- TGTTGCAAGACTTCCAGTCCTTGCAAAGTCATATTCTTCATATTGATTAAATAATCTTTC
rJMSF034B23- TGTTGCAAGACTTCCAGTCCTTGCAAAGTCATATTCTTCATATTGATTAAATAATCTTTC
rJMSF018J14- TGTTGCAAGACTTCCAGTCCTTGCAAAGTCATATTCTTCATATTGATTAAATAATCTTTC
JMSF034B23+ TGTTGCAAGACTTCCAGTCCTTGCAAAGTCATATTCTTCATATTGATTAAATAATCTTTC
JMFF034C22+ TGTTGCAAGACTTCCAGTCCTTGCAAAGTCATATTCTTCATATTGATTAAATAATCTTTC
JMSF018J14+ TGTTGCAAGACTTCCAGTCCTTGCAAAGTCATATTCTTCATATTGATTAAATAATCTTTC
                      ____________________________________________________________
consensus TGTTGCAAGACTTCCAGTCCTTGCAAAGTCATATTCTTCATATTGATTAAATAATCTTTC
 
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rJMSF035B23- AACTTCTTCCTTTGGCAA
rJMSF034B23- AACTTCTTCCTTTGGCAAATCAGTAAACAAAAGCCCTGAATTTCC
rJMSF018J14- AACTTCTTCCTTTGGCAAATCAGTAAACAAAAGCCCTGAATTTCCACGCAATAGCTTAGA
JMSF034B23+ AACTTCTTCCTTTGGCAAATCAGTAAACAAAAGCCCTGAATTTCCACGCAATAGCTTAGA
JMFF034C22+ AACTTCTTCCTTTGGCAAATCAGTAAACAAAAGCCCTGAATTTCCACGCAATAGCTTAGA
JMSF018J14+ AACTTCTTCCTTTGGCAAATCAGTAAACAAAAGCCCTGAATTTCCACGCAATAGCTTAGA
                      ____________________________________________________________
consensus AACTTCTTCCTTTGGCAAATCAGTAAACAAAAGCCCTGAATTTCCACGCAATAGCTTAGA
 
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rJMSF018J14- AATCTTGTAAAGACCCGGTTTAATCTCGTCAGCAACGGAACGACCTAGTGCTATCTGCAT
JMSF034B23+ AATCTTGTAAAGACCCGGTTTAATCTCGTCAGCAACGGAACGACCTAGTGCTATCTGCAT
JMFF034C22+ AATCTTGTAAAGACCCGGTTTAATCTCGTCAGCAACGGAACGACCTAGTGCTATCTGCAT
JMSF018J14+ AATCTTGTAAAGACCCGGTTTAATCTCGTCAGCAACGGAACGACCTAGTGCTATCTGCAT
                      ____________________________________________________________
consensus AATCTTGTAAAGACCCGGTTTAATCTCGTCAGCAACGGAACGACCTAGTGCTATCTGCAT
 
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rJMSF018J14- TACCTTATTTGGTCCAAGGAAAAATCTGCTAGAAGATTTAAGCTGCTCTCTGAACTCTTT
JMSF034B23+ TACCTTATTTGGTCCAAGGAAAAATCTGCTAGAAGATTTAAGCTGCTCTCTGAACTCTTT
JMFF034C22+ TACCTTATTTGGTCCAAGGAAAAATCTGCTAGAAGATTTAAGCTGCTCTCTGAACTCTTT
JMSF018J14+ TACCTTATTTGGTCCAAGGAAAAATCTGCTAGAAGATTTAAGCTGCTCTCTGAACTCTTT
                      ____________________________________________________________
consensus TACCTTATTTGGTCCAAGGAAAAATCTGCTAGAAGATTTAAGCTGCTCTCTGAACTCTTT
 
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rJMSF018J14- AAATTTGAGAT
JMSF034B23+ AAATTTGAGATTCCTCATGTTCTCAAAACCAAAAACGTAAGCAGAATTGAACTTCTCACA
JMFF034C22+ AAATTTGAGATTCCTCATGTTCTCAAAACCAAAAACGTAAGCAGAATTGAACTTCTCACA
JMSF018J14+ AAATTTGAGATTCCTCATGTTCTCAAAACCAAAAACGTAAGCAGAATTGAACTTCTCACA
                      ____________________________________________________________
consensus AAATTTGAGATTCCTCATGTTCTCAAAACCAAAAACGTAAGCAGAATTGAACTTCTCACA
 
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JMSF034B23+ CGATTCTCGAATAGCATTAACAATGCTCTCTTTGTGTTCCCTGCCCTTCTTCTTCGTCTT
JMFF034C22+ CGATTCTCGAATAGCATTAACAATGCTCTCTTTGTGTTCCCTGCCCTTCTTCTTCGTCTT
JMSF018J14+ CGATTCTCGAATAGCATTAACAATGCTCTCTTTGTGTTCCCTGCCCTTCTTCTTCGTCTT
                      ____________________________________________________________
consensus CGATTCTCGAATAGCATTAACAATGCTCTCTTTGTGTTCCCTGCCCTTCTTCTTCGTCTT
 
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JMSF034B23+ GGATAAAGTCACCGTCCTATTGCGCTTTGATTTAGGCATCGTTGAAGTAGCAGATGTATC
JMFF034C22+ GGATAAAGTCACCGTCCTATTGCGCTTTGATTTAGGCATCGTTGAAGTAGCAGATGTATC
JMSF018J14+ GGATAAAGTCACCGTCCTATTGCGCTTTGATTTAGGCATCGTTGAAGTAGCAGATGTATC
                      ____________________________________________________________
consensus GGATAAAGTCACCGTCCTATTGCGCTTTGATTTAGGCATCGTTGAAGTAGCAGATGTATC
 
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JMSF034B23+ TCTCTATGTGCTTGGCTGTGAAGGCGTTCGTTTGCTCTCGGACT
JMFF034C22+ TCTCTATGTGCTTGGCTGTGAAGGCGTTCGTTTGCTCTCGGACTATGCGTTCCTCCGAC
JMSF018J14+ TCTCTATGTGCTTGGCTGTGAAGGCGTTCGTTTGCTCTCGGACTATGCGTTCCTCCGACC
                      ____________________________________________________________
consensus TCTCTATGTGCTTGGCTGTGAAGGCGTTCGTTTGCTCTCGGACTATGCGTTCCTCCGACC