Contig 009253:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015E24Sequence549009253 (5)ref|XP_004231043.1|7e-84PREDICTED: WD-40 repeat-containing protein MSI2-like [Solanum lycopersicum]530002558 (3)ref|XP_009791634.1|2e-57PREDICTED: WD-40 repeat-containing protein MSI2-like [Nicotiana sylvestris]
JMFF022L13Sequence505009253 (5)ref|XP_004231043.1|1e-63PREDICTED: WD-40 repeat-containing protein MSI2-like [Solanum lycopersicum]
JMFF051P11Sequence631009253 (5)ref|XP_004231043.1|1e-85PREDICTED: WD-40 repeat-containing protein MSI2-like [Solanum lycopersicum]594004716 (4)ref|XP_007026646.1|2e-21Metallopeptidase M24 family protein isoform 1 [Theobroma cacao] gb|EOY07148.1| M
JMSF013G17Sequence446009253 (5)ref|XP_004231043.1|6e-48PREDICTED: WD-40 repeat-containing protein MSI2-like [Solanum lycopersicum]473002558 (3)ref|XP_009791634.1|2e-32PREDICTED: WD-40 repeat-containing protein MSI2-like [Nicotiana sylvestris]
JMSF013H03Sequence293009253 (5)ref|XP_004231043.1|4e-18PREDICTED: WD-40 repeat-containing protein MSI2-like [Solanum lycopersicum]690002558 (3)ref|XP_009791634.1|1e-101PREDICTED: WD-40 repeat-containing protein MSI2-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF015E24+ AATGGGCTCCATGACAAGCCATACCCT
JMFF051P11+ ACTCAAAAGACTCCCCTCTCTGAATGGGCTCCATGACAAGCCATACCCT
                      ____________________________________________________________
consensus ACTCAAAAGACTCCCCTCTCTGAATGGGCTCCATGACAAGCCATACCCT
 
. : . : . : . : . : . :
JMFF015E24+ TCTTTATCATGACCTCTCAGTCTTAAGTAAGGGTCACAAGATCCCCCTTCATCATGATTC
JMFF051P11+ TCTTATCNATGACCTCTCAGTCTTAAGTAAGGGTCACAAGATCCCCCTTCATCATGATTC
                      ____________________________________________________________
consensus TCTTTTTCATGACCTCTCAGTCTTAAGTAAGGGTCACAAGATCCCCCTTCATCATGATTC
 
. : . : . : . : . : . :
JMFF015E24+ AAATGCTGGTTGGCACTGTCAAACACGTAAACTTCACAGCCATTAGTTTTAGCTGCAACA
JMFF051P11+ AAATGCTGGTTGGCACTGTCAAACACGTAAACTTCACAGCCATTAGTTTTAGCTGCAACA
JMFF022L13+ GTCAAACACGTAAACTTCACAGCCATTAGTTTTAGCTGCAACA
                      ____________________________________________________________
consensus AAATGCTGGTTGGCACTGTCAAACACGTAAACTTCACAGCCATTAGTTTTAGCTGCAACA
 
. : . : . : . : . : . :
JMFF015E24+ ACACCTGTGTTCTGCGGCATACATCTTGCCCTATTCACTTCCCCATCACAGAGTATCTTT
JMFF051P11+ ACACCTGTGTTCTGCGGCATACATCTTGCCCTATTCACTTCCCCATCACAGAGTATCTTT
JMFF022L13+ ACACCTGTGTTCTGCGGCATACATCTTGCCCTATTCACTTCCCCATCACAGAGTATCTTT
JMSF013G17+ TCACTTCCCCATCACAGAGTATCTTT
                      ____________________________________________________________
consensus ACACCTGTGTTCTGCGGCATACATCTTGCCCTATTCACTTCCCCATCACAGAGTATCTTT
 
. : . : . : . : . : . :
JMFF015E24+ TGTACTATCTCAACCTTGGGGGTTTGAAATTCACTGAGATTGTGCTCTAGGCCAGAGGCA
JMFF051P11+ TGTACTATCTCAACCTTGGGGGTTTGAAATTCACTGAGATTGTGCTCTAGGCCAGAGGCA
JMFF022L13+ TGTACTATCTCAACCTTGGGGGTTTGAAATTCACTGAGATTGTGCTCTAGGCCAGAGGCA
JMSF013G17+ TGTACTATCTCAACCTTGGGGGTTTGAAATTCACTGAGATTGTGCTCTAGGCCAGAGGCA
                      ____________________________________________________________
consensus TGTACTATCTCAACCTTGGGGGTTTGAAATTCACTGAGATTGTGCTCTAGGCCAGAGGCA
 
. : . : . : . : . : . :
JMFF015E24+ GGGTTCCGAGGAAGGTAGGCCTGAGCGAGCATAAGGAAGTTGGGACAGTCGTCAGAGGTA
JMFF051P11+ GGGTTCCGAGGAAGGTAGGCCTGAGCGAGCATAAGGAAGTTGGGACAGTCGTCAGAGGTA
JMFF022L13+ GGGTTCCGAGGAAGGTAGGCCTGAGCGAGCATAAGGAAGTTGGGACAGTCGTCAGAGGTA
JMSF013G17+ GGGTTCCGAGGAAGGTAGGCCTGAGCGAGCATAAGGAAGTTGGGACAGTCGTCAGAGGTA
                      ____________________________________________________________
consensus GGGTTCCGAGGAAGGTAGGCCTGAGCGAGCATAAGGAAGTTGGGACAGTCGTCAGAGGTA
 
. : . : . : . : . : . :
JMFF015E24+ TGGGTTCCCAGAAGGAGCTTGTGTACAGAGAAAGGACCGTCATGAGATGGAGGAGAAGGA
JMFF051P11+ TGGGTTCCCAGAAGGAGCTTGTGTACAGAGAAAGGACCGTCATGAGATGGAGGAGAAGGA
JMFF022L13+ TGGGTTCCCAGAAGGAGCTTGTGTACAGAGAAAGGACCGTCATGAGATGGAGGAGAAGGA
JMSF013H03+ CCAGAAGGAGCTTGTGTACAGAGAAAGGACCGTCATGAGATGGAGGAGAAGGA
JMSF013G17+ TGGGTTCCCAGAAGGAGCTTGTGTACAGAGAAAGGACCGTCATGAGATGGAGGAGAAGGA
                      ____________________________________________________________
consensus TGGGTTCCCAGAAGGAGCTTGTGTACAGAGAAAGGACCGTCATGAGATGGAGGAGAAGGA
 
. : . : . : . : . : . :
JMFF015E24+ AGGCACTGAACGGTGAGAGAAGGCCACTCGAGGGAATGAGAGATGACGAGGTCGTACAAC
JMFF051P11+ AGGCACTGAACGGTGAGAGAAGGCCACTCGAGGGAATGAGAGATGACGAGGTCGTACAAC
JMFF022L13+ AGGCACTGAACGGTGAGAGAAGGCCACTCGAGGGAATGAGAGATGACGAGGTCGTACAAC
JMSF013H03+ AGGCACTGAACGGTGAGAGAAGGCCACTCGAGGGAATGAGAGATGACGAGGTCGTACAAC
JMSF013G17+ AGGCACTGAACGGTGAGAGAAGGCCACTCGAGGGAATGAGAGATGACGAGGTCGTACAAC
                      ____________________________________________________________
consensus AGGCACTGAACGGTGAGAGAAGGCCACTCGAGGGAATGAGAGATGACGAGGTCGTACAAC
 
. : . : . : . : . : . :
JMFF015E24+ AACGGCGTGTTCTTCTTCCACACCGCGAACTCCTCATCCACTCCTTCGCCTCCGGCGGTC
JMFF051P11+ AACGGCGTGTTCTTCTTCCACACCGCGAACTCCTCATCCACTCCTTCGCCTCCGGCGGTC
JMFF022L13+ AACGGCGTGTTCTTCTTCCACACCGCGAACTCCTCATCCACTCCTTCGCCTCCGGCGGTC
JMSF013H03+ AACGGCGTGTTCTTCTTCCACACCGCGAACTCCTCATCCACTCCTTCGCCTCCGGCGGTC
JMSF013G17+ AACGGCGTGTTCTTCTTCCACACCGCGAACTCCTCATCCACTCCTTCGCCTCCGGCGGTC
                      ____________________________________________________________
consensus AACGGCGTGTTCTTCTTCCACACCGCGAACTCCTCATCCACTCCTTCGCCTCCGGCGGTC
 
. : . : . : . : . : . :
JMFF015E24+ GCCTCCATTTCTCTCTCTACCATTCTCTCCCAGTCAAGAACT
JMFF051P11+ GCCTCCATTTCTCTCTCTACCATTCTCTCCCAGTCAAGAACTGTGAACCAAGTCGCGGTG
JMFF022L13+ GCCTCCATTTCTCTCTCTACCATTCTCTCCCAGTCAAGAACTGTGAACCAAGTCGCGGTG
JMSF013H03+ GCCTCCATTTCTCTCTCTACCATTCTCTCCCAGTCAAGAACTGTGAACCAAGTCGCGGTG
JMSF013G17+ GCCTCCATTTCTCTCTCTACCATTCTCTCCCAGTCAAGAACTGTGAACCAAGTCGCGGTG
                      ____________________________________________________________
consensus GCCTCCATTTCTCTCTCTACCATTCTCTCCCAGTCAAGAACTGTGAACCAAGTCGCGGTG
 
. : . : . : . : . : . :
JMFF051P11+ GAGGGTATACGAAAGAAAACGCAGCGGCTG
JMFF022L13+ GAGGGTATACGAAAGAAAACGCAGCGGCTG
JMSF013H03+ GAGGGTATACGAAAGAAAACGCAGCGGCTGCGCGGATTCAGGATTCTGTTTTCCCCGCCC
JMSF013G17+ GAGGGTATACGAAAGAAAACGCAGCGGCTGCGCGGATTCAGGATTCTGTTTTCCCCGCCC
                      ____________________________________________________________
consensus GAGGGTATACGAAAGAAAACGCAGCGGCTGCGCGGATTCAGGATTCTGTTTTCCCCGCCC