Contig 009244:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS063H07Sequence593009244 (2)ref|XP_009796828.1|4e-54PREDICTED: putative disease resistance protein RGA3 [Nicotiana sylvestris]
JMSF012C02Sequence441009244 (2)ref|XP_009796828.1|2e-41PREDICTED: putative disease resistance protein RGA3 [Nicotiana sylvestris]788016045ref|XP_009796828.1|2e-63PREDICTED: putative disease resistance protein RGA3 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS063H07+                                                               TCTTACTA
                      ____________________________________________________________
consensus                                                                 TCTTACTA
 
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JMFS063H07+           AATCACTGGCATCAATATCCCGGCCTTGAATCTCGGATGTATCCACACCAAACGAAGTAG
                      ____________________________________________________________
consensus             AATCACTGGCATCAATATCCCGGCCTTGAATCTCGGATGTATCCACACCAAACGAAGTAG
 
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JMFS063H07+           TGGTGACCCGTTTGGATTCCTGATTAGGGTCCGATGCAGAAGTGTGGGTTACAGAGAGAA
                      ____________________________________________________________
consensus             TGGTGACCCGTTTGGATTCCTGATTAGGGTCCGATGCAGAAGTGTGGGTTACAGAGAGAA
 
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JMFS063H07+           AATTGTACTGGTCTTTCTCTTTCACAATCTGATCAAGTCTGGAATCGAGTTCCTTTATTT
                      ____________________________________________________________
consensus             AATTGTACTGGTCTTTCTCTTTCACAATCTGATCAAGTCTGGAATCGAGTTCCTTTATTT
 
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JMFS063H07+           TCAGAGCGATGTCGCGATGAACAACGAGCTTTTTGAAATGGAAACAAGAAGGCAGGAAAG
                      ____________________________________________________________
consensus             TCAGAGCGATGTCGCGATGAACAACGAGCTTTTTGAAATGGAAACAAGAAGGCAGGAAAG
 
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JMFS063H07+           AGCTGCAACCTATTGTCTTTCTACGAATTACCGGAGGAGATGCTGCAAGCTCGGACCTTT
JMSF012C02+                                                                      T
                      ____________________________________________________________
consensus             AGCTGCAACCTATTGTCTTTCTACGAATTACCGGAGGAGATGCTGCAAGCTCGGACCTTT
 
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JMFS063H07+           CGATCTGTTGTGTGAGAATTCTGGTGCGCCACTCGTCCAGAACGTTGTCTACTTCGTAGG
JMSF012C02+           CGATCTGTTGTGTGAGAATTCTGGTGCGCCACTCGTCCAGAACGTTGTCTACTTCGTAGG
                      ____________________________________________________________
consensus             CGATCTGTTGTGTGAGAATTCTGGTGCGCCACTCGTCCAGAACGTTGTCTACTTCGTAGG
 
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JMFS063H07+           AGAAGTCTTGGATCATATCGACCCAGAGCTTGACGCCACTTTCCTTGAAGCTTCTCTTCT
JMSF012C02+           AGAAGTCTTGGATCATATCGACCCAGAGCTTGACGCCACTTTCCTTGAAGCTTCTCTTCT
                      ____________________________________________________________
consensus             AGAAGTCTTGGATCATATCGACCCAGAGCTTGACGCCACTTTCCTTGAAGCTTCTCTTCT
 
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JMFS063H07+           CTGCATCATCTAATACCTCCCTGATTTTCTTGAGCTTTGATGAGAGGTTTGTGATCTCCT
JMSF012C02+           CTGCATCATCTAATACCTCCCTGATTTTCTTGAGCTTTGATGAGAGGTTTGTGATCTCCT
                      ____________________________________________________________
consensus             CTGCATCATCTAATACCTCCCTGATTTTCTTGAGCTTTGATGAGAGGTTTGTGATCTCCT
 
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JMFS063H07+           TCTCCACACCCA                                                
JMSF012C02+           TCTCCACACCCATCGCGGCTCTTAGATCCTCGACTTGGTCCTTGAGGATGTTGAACAGCT
                      ____________________________________________________________
consensus             TCTCCACACCCATCGCGGCTCTTAGATCCTCGACTTGGTCCTTGAGGATGTTGAACAGCT
 
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JMSF012C02+           GATCCACAACGATGGAGATGAGAGCGTCGGCCATGGTTAGTTGACTCTGTACCACTCCCC
                      ____________________________________________________________
consensus             GATCCACAACGATGGAGATGAGAGCGTCGGCCATGGTTAGTTGACTCTGTACCACTCCCC