Contig 009235:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010L04Sequence620009235 (9)ref|XP_011080124.1|3e-101PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch808005389 (8)ref|XP_011080124.1|3e-81PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch
JMFF016E09Sequence546009235 (9)ref|XP_011080124.1|2e-85PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch717005389 (8)emb|CDP03802.1|3e-43unnamed protein product [Coffea canephora]
JMFF016E10Sequence550009235 (9)ref|XP_011080124.1|7e-87PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch778005389 (8)ref|XP_009586626.1|1e-58PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch
JMFF017B05Sequence594009235 (9)ref|XP_011080124.1|6e-92PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch781005389 (8)emb|CDP03802.1|1e-43unnamed protein product [Coffea canephora]
JMSF001A21Sequence270009235 (9)ref|XP_002301843.1|2e-21hypothetical protein POPTR_0002s25720g [Populus trichocarpa] gb|EEE81116.1| hypo670005389 (8)emb|CDP03802.1|5e-44unnamed protein product [Coffea canephora]
JMSF011C08Sequence265009235 (9)ref|XP_002301843.1|3e-08hypothetical protein POPTR_0002s25720g [Populus trichocarpa] gb|EEE81116.1| hypo784005389 (8)ref|XP_011080124.1|8e-83PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch
JMSF026D02Sequence664009235 (9)ref|XP_011080124.1|2e-105PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch719005389 (8)ref|XP_009586626.1|2e-45PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch
JMSF029N06Sequence632009235 (9)ref|XP_011080124.1|2e-106PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch710021494emb|CDP03802.1|6e-44unnamed protein product [Coffea canephora]
JMSF040O20Sequence675009235 (9)ref|XP_011080124.1|3e-102PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch755005389 (8)ref|XP_011080124.1|2e-90PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitoch

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF029N06+ GTATAATAGCTTCCTCAGCTGCAGCTTTAGCCN
JMSF040O20+ CCTCGGGAATTTCTTGTATAATAGCTTCNTCAGCTGCAGCTTTAGCCC
                      ____________________________________________________________
consensus CCTCGGGAATTTCTTGTATAATAGCTTCCTCAGCTGCAGCTTTAGCCC
 
. : . : . : . : . : . :
JMSF029N06+ TAAGCATTCTGGATGGGGATGTTGGAGATGCCCCCAAACTTGAAAGCTGTATAAATCTCA
JMFF010L04+ CATTCTGGATGGGGATGTTGGAGATGCCCCCAAACTTGAAAGCTGTATAAATCTCA
JMSF026D02+ GCATTCTGGATGGGGATGTTGGAGATGCCCCCAAACTTGAAAGCTGTATAAATCTCA
JMFF017B05+ ATAAATCTCA
JMSF040O20+ TAAGCATTCTGGATGGGGATGTTGGAGATGCCCCCAAACTTGAAAGCTGTATAAATCTCA
                      ____________________________________________________________
consensus TAAGCATTCTGGATGGGGATGTTGGAGATGCCCCCAAACTTGAAAGCTGTATAAATCTCA
 
. : . : . : . : . : . :
JMSF029N06+ AAATTCCACCGTGTTCTTTGGCAATTGAAGCAAGCTGTTTAGCCATATAGTGGTTGACTT
JMFF010L04+ AAATTCCACCGTGTTCTTTGGCAATTGAAGCAAGCTGTTTAGCCATATAGTGGTTGACTT
JMSF026D02+ AAATTCCACCGTGTTCTTTGGCAATTGAAGCAAGCTGTTTAGCCATATAGTGGTTGACTT
JMFF016E10+ TTTGGCAATTGAAGCAAGCTGTTTAGCCATATAGTGGTTGACTT
JMFF016E09+ GCAATTGAAGCAAGCTGTTTAGCCATATAGTGGTTGACTT
JMFF017B05+ AAATTCCACCGTGTTCTTTGGCAATTGAAGCAAGCTGTTTAGCCATATAGTGGTTGACTT
JMSF040O20+ AAATTCCACCGTGTTCTTTGGCAATTGAAGCAAGCTGTTTAGCCATATAGTGGTTGACTT
                      ____________________________________________________________
consensus AAATTCCACCGTGTTCTTTGGCAATTGAAGCAAGCTGTTTAGCCATATAGTGGTTGACTT
 
. : . : . : . : . : . :
JMSF029N06+ CCTCAAAGCTGTAATTCCTTGTCTCGTACTCCCTTCCGATAAGATTGATAACAACATTAG
JMFF010L04+ CCTCAAAGCTGTAATTCCTTGTCTCGTACTCCCTTCCGATAAGATTGATAACAACATTAG
JMSF026D02+ CCTCAAAGCTGTAATTCCTTGTCTCGTACTCCCTTCCGATAAGATTGATAACAACATTAG
JMFF016E10+ CCTCAAAGCTGTAATTCCTTGTCTCGTACTCCCTTCCGATAAGATTGATAACAACATTAG
JMFF016E09+ CCTCAAAGCTGTAATTCCTTGTCTCGTACTCCCTTCCGATAAGATTGATAACAACATTAG
JMFF017B05+ CCTCAAAGCTGTAATTCCTTGTCTCGTACTCCCTTCCGATAAGATTGATAACAACATTAG
JMSF040O20+ CCTCAAAGCTGTAATTCCTTGTCTCGTACTCCCTTCCGATAAGATTGATAACAACATTAG
                      ____________________________________________________________
consensus CCTCAAAGCTGTAATTCCTTGTCTCGTACTCCCTTCCGATAAGATTGATAACAACATTAG
 
. : . : . : . : . : . :
JMSF029N06+ CTTTTGCCATCACTGCTTTTATTGAATTTTCATCTCTGGGGTTGTATTTCATTGGAACAA
JMFF010L04+ CTTTTGCCATCACTGCTTTTATTGAATTTTCATCTCTGGGGTTGTATTTCATTGGAACAA
JMSF026D02+ CTTTTGCCATCACTGCTTTTATTGAATTTTCATCTCTGGGGTTGTATTTCATTGGAACAA
JMFF016E10+ CTTTTGCCATCACTGCTTTTATTGAATTTTCATCTCTGGGGTTGTATTTCATTGGAACAA
JMFF016E09+ CTTTTGCCATCACTGCTTTTATTGAATTTTCATCTCTGGGGTTGTATTTCATTGGAACAA
JMFF017B05+ CTTTTGCCATCACTGCTTTTATTGAATTTTCATCTCTGGGGTTGTATTTCACTGGAACAA
JMSF040O20+ CTTTTGCCATCACTGCTTTTATTGAATTTTCATCTCTGGGGTTGTATTTCATTGGAACAA
                      ____________________________________________________________
consensus CTTTTGCCATCACTGCTTTTATTGAATTTTCATCTCTGGGGTTGTATTTCATTGGAACAA
 
. : . : . : . : . : . :
JMSF029N06+ TCTGACCCAAATCACCCATTAACTTGAGATGACGATGACAATCTTCAGATCCTCGGAAAG
JMFF010L04+ TCTGACCCAAATCACCCATTAACTTGAGATGACGATGACAATCTTCAGATCCTCGGAAAG
JMSF026D02+ TCTGACCCAAATCACCCATTAACTTGAGATGACGATGACAATCTTCAGATCCTCGGAAAG
JMFF016E10+ TCTGACCCAAATCACCCATTAACTTGAGATGACGATGACAATCTTCAGATCCTCGGAAAG
JMFF016E09+ TCTGACCCAAATCACCCATTAACTTGAGATGACGATGACAATCTTCAGATCCTCGGAAAG
JMFF017B05+ TCTGACCCAAATCACCCATTAACTTGAGATGACGATGACAATCTTCAGATCCTCGGAAAG
JMSF040O20+ TCTGACCCAAATCACCCATTAACTTGAGATGACGATGACAATCTTCAGATCCTCGGAAAG
                      ____________________________________________________________
consensus TCTGACCCAAATCACCCATTAACTTGAGATGACGATGACAATCTTCAGATCCTCGGAAAG
 
. : . : . : . : . : . :
JMSF029N06+ GTACCAAAACTTGAGAACCCATTTTAGCAAGCTGCTGCACTAGGTACCGCCCAAGAAATC
JMFF010L04+ GTACCAAAACTTGAGAACCCATTTTAGCAAGCTGCTGCACTAGGTACCGCCCAAGAAATC
JMSF026D02+ GTACCAAAACTTGAGAACCCATTTTAGCAAGCTGCTGCACTAGGTACCGCCCAAGAAATC
JMFF016E10+ GTACCAAAACTTGAGAACCCATTTTAGCAAGCTGCTGCACTAGGTACCGCCCAAGAAATC
JMFF016E09+ GTACCAAAACTTGAGAACCCATTTTAGCAAGCTGCTGCACTAGGTACCGCCCAAGAAATC
JMFF017B05+ GTACCAAAACTTGAGAACCCATTTTAGCAAGCTGCTGCACTAGGTACCGCCCAAGAAATC
JMSF001A21+ ATC
JMSF040O20+ GTACCAAAACTTGAGAACCCATTTTAGCAAGCTGCTGCACTAGGTACCGCCCAAGAAATC
                      ____________________________________________________________
consensus GTACCAAAACTTGAGAACCCATTTTAGCAAGCTGCTGCACTAGGTACCGCCCAAGAAATC
 
. : . : . : . : . : . :
JMSF029N06+ CTGTTGCCCCAAACACTGTAGCAACAATTCCACTCACAGATGATCTCCCTCCAGTTCCCT
JMFF010L04+ CTGTTGCCCCAAACACTGTAGCAACAATTCCACTCACAGATGATCTCCCTCCAGTTCCCT
JMSF026D02+ CTGTTGCCCCAAACACTGTAGCAACAATTCCACTCACAGATGATCTCCCTCCAGTTCCCT
JMFF016E10+ CTGTTGCCCCAAACACTGTAGCAACAATTCCACTCACAGATGATCTCCCTCCAGTTCCCT
JMFF016E09+ CTGTTGCCCCAAACACTGTAGCAACAATTCCACTCACAGATGATCTCCCTCCAGTTCCCT
JMFF017B05+ CTGTTGCCCCAAACACTGTAGCAACAATTCCACTCACAGATGATCTCCCTCCAGTTCCCT
JMSF001A21+ CTGTTGCCCCAAACACTGTAGCAACAATTCCACTCACAGATGATCTCCCTCCAGTTCCCT
JMSF040O20+ CTGTTGCCCCAAACACTGTAGCAACAATTCCACTCACAGATGATCTCCCTCCAGTTCCCT
JMSF011C08+ ACAGATGATCTCCCTCCAGTTCCCT
                      ____________________________________________________________
consensus CTGTTGCCCCAAACACTGTAGCAACAATTCCACTCACAGATGATCTCCCTCCAGTTCCCT
 
. : . : . : . : . : . :
JMSF029N06+ TGCGAACTATGTGTCCAGTGCCTTTGGCAGTGAGGGTCGATGCATAGCGCGGGGTTCCAA
JMFF010L04+ TGCGAACTATGTGTCCAGTGCCTTTGGCAGTGAGGGTCGATGCATAGCGCGGGGTTCCAA
JMSF026D02+ TGCGAACTATGTGTCCAGTGCCTTTGGCAGTGAGGGTCGATGCATAGCGCGGGGTTCCAA
JMFF016E10+ TGCGAACTATGTGTCCAGTGCCTTTGGCAGTGAGGGTCGATGCATAGCGCGGGGTTCCAA
JMFF016E09+ TGCGAACTATGTGTCCAGTGCCTTTGGCAGTGAGGGTCGATGCATAGCGCGGGGTTCCAA
JMFF017B05+ TGCGAAC
JMSF001A21+ TGCGAACTATGTGTCCAGTGCCTTTGGCAGTGAGGGTCGATGCATAGCGCGGGGTTCCAA
JMSF040O20+ TGCGAACTATGTGTCCAGTGCCTTTGGCAGTGAGGGTCGATGCATAGCGCGGGGTTCCAA
JMSF011C08+ TGCGAACTATGTGTCCAGTGCCTTTGGCAGTGAGGGTCGATGCATAGCGCGGGGTTCCAA
                      ____________________________________________________________
consensus TGCGAACTATGTGTCCAGTGCCTTTGGCAGTGAGGGTCGATGCATAGCGCGGGGTTCCAA
 
. : . : . : . : . : . :
JMSF029N06+ TTCCATAGCATTGATCGGAGAGGAGATAGGAAGACTTGAGAGCTGAAATTGAAGGTGAAG
JMFF010L04+ TTCCATAGCATTGATCGGAGAGGAGATAGGAAGACTTGAGAGCTGAAATTGAAGGTGAAG
JMSF026D02+ TTCCATAGCATTGATCGGAGAGGAGATAGGAAGACTTGAGAGCTGAAATTGAAGGTGAAG
JMFF016E10+ TTCCATAGCATTGATCGGAGAGGAGATAGGAAGACTTGAGAGCTGAAATTGAAGGTGAAG
JMFF016E09+ TTCCATAGCATTGATCGGAGAGGAGATAGGAAGACTTGAGAGCTGAAATTGAAGGTGAAG
JMSF001A21+ TTCCATAGCATTGATCGGAGAGGAGATAGGAAGACTTGAGAGCTGAAATTGAAGGTGAAG
JMSF040O20+ TTCCATAGCATTGATCGGAGAGGAGATAGGAAGACTTGAGAGCTGAAATTGAAGGTGAAG
JMSF011C08+ TTCCATAGCATTGATCGGAGAGGAGATAGGAAGACTTGAGAGCTGAAATTGAAGGTGAAG
                      ____________________________________________________________
consensus TTCCATAGCATTGATCGGAGAGGAGATAGGAAGACTTGAGAGCTGAAATTGAAGGTGAAG
 
. : . : . : . : . : . :
JMSF029N06+ ACGGGTTTAAAGATTGTTGCCCTAGACGCCTCGTAACGGCCTGCATTGTTCTTCGTC
JMFF010L04+ ACGGGTTTAAAGATTGTTGCCCTAGACGCCTCGTAACGGCCTGCATTGTTCTTCGTCTGC
JMSF026D02+ ACGGGTTTAAAGATTGTTGCCCTAGACGCCACGTAACGGCCTGCATTGTTCTTCGTCTGC
JMFF016E10+ ACGGGTTTAAAGATTGTTGCCCTAGACGCCTCGTAACGGCCTGCATTGTTCTTCGTCTGC
JMFF016E09+ ACGGGTTTAAAGATTGTTGCCCTAGACGCCTCGTAACGGCCTGCATTGTTCTTCGTCTGC
JMSF001A21+ ACGGGTTTAAAGATTGTTGCCCTAGACGCCTCGTAACGGCCTGCATTGTTCTTCATCTGC
JMSF040O20+ ACGGGTTTAAAGATTGTTGCCCTAGACGCCTCGTAACGGCCTGCATTGTTCTTCGTCTGC
JMSF011C08+ ACGGGTTTAAAGATTGTTGCCCTAGACGCCTCGTAACGGCCTGCATTGTTCTTCGTCTGC
                      ____________________________________________________________
consensus ACGGGTTTAAAGATTGTTGCCCTAGACGCCTCGTAACGGCCTGCATTGTTCTTCGTCTGC
 
. : . : . : . : . : . :
JMFF010L04+ GCTGAGCTCTGGGAGAAAGCGATT
JMSF026D02+ GCTGAGCTCTGGGAGAAAGCGATTGC
JMFF016E10+ GCTGAGCTCTGGGAGAAAGCGATTGC
JMFF016E09+ GCTGAGCTCTGGGAGAAAGCGATTGC
JMSF001A21+ GCTGAGCTCTGGGAGAAAGCGATTG
JMSF040O20+ GCTGAGCTCTGGGAGAAAGCGATTGC
JMSF011C08+ GCTGAGCTCTGGGAGAAAGCGATTGCGAATTGCTGTTTGCTGCAAAGGCCTGTGAAAATC
                      ____________________________________________________________
consensus GCTGAGCTCTGGGAGAAAGCGATTGCGAATTGCTGTTTGCTGCAAAGGCCTGTGAAAATC