Contig 009227:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010B20Sequence263009227 (3)ref|XP_009764389.1|2e-23PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Nicotiana sylvestris]746009910 (2)ref|XP_009764389.1|3e-43PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Nicotiana sylvestris]
JMSF012H01Sequence263009227 (3)ref|XP_009764389.1|5e-36PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Nicotiana sylvestris]786009910 (2)ref|XP_006343368.1|7e-55PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like isoform X2 [Solanum
JMSF040F22Sequence656009227 (3)ref|XP_009764389.1|7e-110PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Nicotiana sylvestris]577004174 (3)ref|XP_009586696.1|309PREDICTED: uncharacterized protein LOC104084515 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF040F22+ TTTCTAAACTCATTCTTCTCAAAATCGGGTCCTGCA
                      ____________________________________________________________
consensus TTTCTAAACTCATTCTTCTCAAAATCGGGTCCTGCA
 
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JMSF040F22+ TCACAACGATCAATAGAAGCAGGAGCAATATTAAGATCCCCAACAACAACTATCCTCCGT
                      ____________________________________________________________
consensus TCACAACGATCAATAGAAGCAGGAGCAATATTAAGATCCCCAACAACAACTATCCTCCGT
 
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JMSF040F22+ CCTTGACGTAGTAGACAATCCCACCTTCTCTCTAATATCTTGAAAAATATAAGCTTAAAT
                      ____________________________________________________________
consensus CCTTGACGTAGTAGACAATCCCACCTTCTCTCTAATATCTTGAAAAATATAAGCTTAAAT
 
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JMSF040F22+ TGGATTCTTTCGGAATCATCAGAACCAGCCCTGGGACCATATATATTGAAAAGAACAAAA
                      ____________________________________________________________
consensus TGGATTCTTTCGGAATCATCAGAACCAGCCCTGGGACCATATATATTGAAAAGAACAAAA
 
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JMSF040F22+ TGCCCATGATCTGTGATTATACAACGCCCCTCACTATCGACTTTAAGAAGTTCATCCCTA
                      ____________________________________________________________
consensus TGCCCATGATCTGTGATTATACAACGCCCCTCACTATCGACTTTAAGAAGTTCATCCCTA
 
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JMSF040F22+ GAAAATCCCTCAAGGCCTTGTGCAATCAGAGAACTGTTATCTTTTCTAGATCCACATCCC
                      ____________________________________________________________
consensus GAAAATCCCTCAAGGCCTTGTGCAATCAGAGAACTGTTATCTTTTCTAGATCCACATCCC
 
. : . : . : . : . : . :
JMSF012H01+ GGAGCGGCCCTTA
JMSF040F22+ TGAGAAGCCTTAAGAAGTCCTGTAAATCCCTCCTCGGAATAGCCAGCGGAGCGGCCCTTA
                      ____________________________________________________________
consensus TGAGAAGCCTTAAGAAGTCCTGTAAATCCCTCCTCGGAATAGCCAGCGGAGCGGCCCTTA
 
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JMSF012H01+ TCGGAAGTGCGAGTGCAAGAGAAGAAGGACTCGTAGCCTTCAGCCCTAACCAAGTCGGCT
JMSF040F22+ TCGGAAGTGCGAGTGCAAGAGAAGAAGGACTCGTAGCCTTCAGCCCTAACCAAGTCGGCT
JMSF010B20+ CTTCAGCCCTAACCAAGTCGGCT
                      ____________________________________________________________
consensus TCGGAAGTGCGAGTGCAAGAGAAGAAGGACTCGTAGCCTTCAGCCCTAACCAAGTCGGCT
 
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JMSF012H01+ CGCAGGTCTTGTCTCGATAGTTTCGTCTCCTGGAAGCAGATGATATCAGCGTCGAGCGAA
JMSF040F22+ CGCAGGTCTTGTCTCGATAGTTTCGTCTCCTGGAAGCAGATGATATCAGCGTCGAGCGAA
JMSF010B20+ CGCAGGTCTTGTCTCGATAGTTTCGTCTCCTGGAAGCAGATGATATCAGCGTCGAGCGAA
                      ____________________________________________________________
consensus CGCAGGTCTTGTCTCGATAGTTTCGTCTCCTGGAAGCAGATGATATCAGCGTCGAGCGAA
 
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JMSF012H01+ TCGAGAAGGCCGGGAAGAGAACCGAACTGTGAGACTCGAGGCCTTAGGCCGTTCACGTTG
JMSF040F22+ TCGAGAAGGCCGGGAAGAGAACCGAACTGTGAGACTCGAGGCCTTAGGCCGTTCACGTTG
JMSF010B20+ TCGAGAAGGCCGGGAAGAGAACCGAACTGTGAGACTCGAGGCCTTAGGCCGTTCACGTTG
                      ____________________________________________________________
consensus TCGAGAAGGCCGGGAAGAGAACCGAACTGTGAGACTCGAGGCCTTAGGCCGTTCACGTTG
 
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JMSF012H01+ TACGTCACTATCTTCATTCATTCATTCATTCGGAGTTCCAGCAGCAACGCAGTGCTGAGT
JMSF040F22+ TACGTCACTATCTTCATTCATTCATTCATTCGGAGTTCCAGCAGCAACGCAGTGCTGAGT
JMSF010B20+ TACGTCACTATCTTCATTCATTCATTCATTCGGAGTTCCAGCAGCAACGCAGTGCTGAGT
                      ____________________________________________________________
consensus TACGTCACTATCTTCATTCATTCATTCATTCGGAGTTCCAGCAGCAACGCAGTGCTGAGT
 
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JMSF012H01+ CCACTCGCT
JMSF040F22+ CCACTCGCTAACTCGTTT
JMSF010B20+ CCACTCGCTAACTCGTTTCGTTTTTGCCACTGCGCTCAAATCCTTCCTTCACTTTTTCCC
                      ____________________________________________________________
consensus CCACTCGCTAACTCGTTTCGTTTTTGCCACTGCGCTCAAATCCTTCCTTCACTTTTTCCC