clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF010B20 | Sequence | 263 | 009227 (3) | ref|XP_009764389.1| | 2e-23 | PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Nicotiana sylvestris] | 746 | 009910 (2) | ref|XP_009764389.1| | 3e-43 | PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Nicotiana sylvestris] |
JMSF012H01 | Sequence | 263 | 009227 (3) | ref|XP_009764389.1| | 5e-36 | PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Nicotiana sylvestris] | 786 | 009910 (2) | ref|XP_006343368.1| | 7e-55 | PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like isoform X2 [Solanum |
JMSF040F22 | Sequence | 656 | 009227 (3) | ref|XP_009764389.1| | 7e-110 | PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Nicotiana sylvestris] | 577 | 004174 (3) | ref|XP_009586696.1| | 309 | PREDICTED: uncharacterized protein LOC104084515 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMSF040F22+ TTTCTAAACTCATTCTTCTCAAAATCGGGTCCTGCA
____________________________________________________________
consensus TTTCTAAACTCATTCTTCTCAAAATCGGGTCCTGCA
. : . : . : . : . : . :
JMSF040F22+ TCACAACGATCAATAGAAGCAGGAGCAATATTAAGATCCCCAACAACAACTATCCTCCGT
____________________________________________________________
consensus TCACAACGATCAATAGAAGCAGGAGCAATATTAAGATCCCCAACAACAACTATCCTCCGT
. : . : . : . : . : . :
JMSF040F22+ CCTTGACGTAGTAGACAATCCCACCTTCTCTCTAATATCTTGAAAAATATAAGCTTAAAT
____________________________________________________________
consensus CCTTGACGTAGTAGACAATCCCACCTTCTCTCTAATATCTTGAAAAATATAAGCTTAAAT
. : . : . : . : . : . :
JMSF040F22+ TGGATTCTTTCGGAATCATCAGAACCAGCCCTGGGACCATATATATTGAAAAGAACAAAA
____________________________________________________________
consensus TGGATTCTTTCGGAATCATCAGAACCAGCCCTGGGACCATATATATTGAAAAGAACAAAA
. : . : . : . : . : . :
JMSF040F22+ TGCCCATGATCTGTGATTATACAACGCCCCTCACTATCGACTTTAAGAAGTTCATCCCTA
____________________________________________________________
consensus TGCCCATGATCTGTGATTATACAACGCCCCTCACTATCGACTTTAAGAAGTTCATCCCTA
. : . : . : . : . : . :
JMSF040F22+ GAAAATCCCTCAAGGCCTTGTGCAATCAGAGAACTGTTATCTTTTCTAGATCCACATCCC
____________________________________________________________
consensus GAAAATCCCTCAAGGCCTTGTGCAATCAGAGAACTGTTATCTTTTCTAGATCCACATCCC
. : . : . : . : . : . :
JMSF012H01+ GGAGCGGCCCTTA
JMSF040F22+ TGAGAAGCCTTAAGAAGTCCTGTAAATCCCTCCTCGGAATAGCCAGCGGAGCGGCCCTTA
____________________________________________________________
consensus TGAGAAGCCTTAAGAAGTCCTGTAAATCCCTCCTCGGAATAGCCAGCGGAGCGGCCCTTA
. : . : . : . : . : . :
JMSF012H01+ TCGGAAGTGCGAGTGCAAGAGAAGAAGGACTCGTAGCCTTCAGCCCTAACCAAGTCGGCT
JMSF040F22+ TCGGAAGTGCGAGTGCAAGAGAAGAAGGACTCGTAGCCTTCAGCCCTAACCAAGTCGGCT
JMSF010B20+ CTTCAGCCCTAACCAAGTCGGCT
____________________________________________________________
consensus TCGGAAGTGCGAGTGCAAGAGAAGAAGGACTCGTAGCCTTCAGCCCTAACCAAGTCGGCT
. : . : . : . : . : . :
JMSF012H01+ CGCAGGTCTTGTCTCGATAGTTTCGTCTCCTGGAAGCAGATGATATCAGCGTCGAGCGAA
JMSF040F22+ CGCAGGTCTTGTCTCGATAGTTTCGTCTCCTGGAAGCAGATGATATCAGCGTCGAGCGAA
JMSF010B20+ CGCAGGTCTTGTCTCGATAGTTTCGTCTCCTGGAAGCAGATGATATCAGCGTCGAGCGAA
____________________________________________________________
consensus CGCAGGTCTTGTCTCGATAGTTTCGTCTCCTGGAAGCAGATGATATCAGCGTCGAGCGAA
. : . : . : . : . : . :
JMSF012H01+ TCGAGAAGGCCGGGAAGAGAACCGAACTGTGAGACTCGAGGCCTTAGGCCGTTCACGTTG
JMSF040F22+ TCGAGAAGGCCGGGAAGAGAACCGAACTGTGAGACTCGAGGCCTTAGGCCGTTCACGTTG
JMSF010B20+ TCGAGAAGGCCGGGAAGAGAACCGAACTGTGAGACTCGAGGCCTTAGGCCGTTCACGTTG
____________________________________________________________
consensus TCGAGAAGGCCGGGAAGAGAACCGAACTGTGAGACTCGAGGCCTTAGGCCGTTCACGTTG
. : . : . : . : . : . :
JMSF012H01+ TACGTCACTATCTTCATTCATTCATTCATTCGGAGTTCCAGCAGCAACGCAGTGCTGAGT
JMSF040F22+ TACGTCACTATCTTCATTCATTCATTCATTCGGAGTTCCAGCAGCAACGCAGTGCTGAGT
JMSF010B20+ TACGTCACTATCTTCATTCATTCATTCATTCGGAGTTCCAGCAGCAACGCAGTGCTGAGT
____________________________________________________________
consensus TACGTCACTATCTTCATTCATTCATTCATTCGGAGTTCCAGCAGCAACGCAGTGCTGAGT
. : . : . : . : . : . :
JMSF012H01+ CCACTCGCT
JMSF040F22+ CCACTCGCTAACTCGTTT
JMSF010B20+ CCACTCGCTAACTCGTTTCGTTTTTGCCACTGCGCTCAAATCCTTCCTTCACTTTTTCCC
____________________________________________________________
consensus CCACTCGCTAACTCGTTTCGTTTTTGCCACTGCGCTCAAATCCTTCCTTCACTTTTTCCC