Contig 009208:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012D17Sequence535009208 (5)ref|XP_006359789.1|5e-50PREDICTED: lysine-specific histone demethylase 1 homolog 1-like [Solanum tubero777013728 (4)ref|XP_009624770.1|1e-74PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Nicotiana tomentosi
JMFF026I15Sequence606009208 (5)ref|XP_006359789.1|4e-67PREDICTED: lysine-specific histone demethylase 1 homolog 1-like [Solanum tubero730013728 (4)ref|XP_009776050.1|1e-61PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Nicotiana sylvestri
JMFF037C12Sequence568009208 (5)ref|XP_006359789.1|9e-61PREDICTED: lysine-specific histone demethylase 1 homolog 1-like [Solanum tubero
JMFS088F03Sequence627009208 (5)ref|XP_006359789.1|4e-75PREDICTED: lysine-specific histone demethylase 1 homolog 1-like [Solanum tubero
JMSF008D09Sequence244009208 (5)769013728 (4)ref|XP_009624770.1|2e-82PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Nicotiana tomentosi

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS088F03+ CTCGAATTGACTCCAAGGCGTGGTCCTTAGTGAGCCAGACGGA
JMFF026I15+ AGCCAGACGGA
                      ____________________________________________________________
consensus CTCGAATTGACTCCAAGGCGTGGTCCTTAGTGAGCCAGACGGA
 
. : . : . : . : . : . :
JMFF037C12+ ACCGTGCGAGAATGTGGTTGCGGACGACGATGTAATTGGCTTGCTC
JMFS088F03+ GACATTGGAGCGCCACCGTGCGAGAATGTGGTTGCGGACGACGATGTAATTGGCTTGCTC
JMFF026I15+ GACATTGGAGCGCCACCGTGCGAGAATGTGGTTGCGGACGACGATGTAATTGGCTTGCTC
                      ____________________________________________________________
consensus GACATTGGAGCGCCACCGTGCGAGAATGTGGTTGCGGACGACGATGTAATTGGCTTGCTC
 
. : . : . : . : . : . :
JMFF037C12+ GTCACCGCCGATCTGGGACACCACATTGGCCTCAATTTCCTCTTCGGTGAGCGAGTCCAC
JMFS088F03+ GTCACCGCCGATCTGGGACACCACATTGGCCTCAATTTCCTCTTCGGTGAGCGAGTCCAC
JMFF026I15+ GTCACCGCCGATCTGGGACACCACATTGGCCTCAATTTCCTCTTCGGTGAGCGAGTCCAC
JMFF012D17+ GTCACCGCCGATCTGGGACACCACATTGGCCTCAATTTCCTCTTCGGTGAGCGAGTCCAC
                      ____________________________________________________________
consensus GTCACCGCCGATCTGGGACACCACATTGGCCTCAATTTCCTCTTCGGTGAGCGAGTCCAC
 
. : . : . : . : . : . :
JMFF037C12+ TGGAAACCCCACGGAGATAGCTATTAGGGCTTCGATGTCCACCTCCTTAGCCAGGTCCGA
JMFS088F03+ TGGAAACCCCACGGAGATAGCTATTAGGGCTTCGATGTCCACCTCCTTAGCCAGGTCCGA
JMFF026I15+ TGGAAACCCCACGGAGATAGCTATTAGGGCTTCGATGTCCACCTCCTTAGCCAGGTCCGA
JMFF012D17+ TGGAAACCCCACGGAGATAGCTATTAGGGCTTCGATGTCCACCTCCTTAGCCAGGTCCGA
                      ____________________________________________________________
consensus TGGAAACCCCACGGAGATAGCTATTAGGGCTTCGATGTCCACCTCCTTAGCCAGGTCCGA
 
. : . : . : . : . : . :
JMFF037C12+ AACTCTCTTCCGGCGGTGAGGATTCTTCGAAAGGTCCTCCTCGGCGGCGGCGAAGTCGGT
JMFS088F03+ AACTCTCTTCCGGCGGTGAGGATTCTTCGAAAGGTCCTCCTCGGCGGCGGCGAAGTCGGT
JMFF026I15+ AACTCTCTTCCGGCGGTGAGGATTCTTCGAAAGGTCCTCCTCGGCGGCGGCGAAGTCGGT
JMFF012D17+ AACTCTCTTCCGGCGGTGAGGATTCTTCGAAAGGTCCTCCTCGGCGGCGGCGAAGTCGGT
                      ____________________________________________________________
consensus AACTCTCTTCCGGCGGTGAGGATTCTTCGAAAGGTCCTCCTCGGCGGCGGCGAAGTCGGT
 
. : . : . : . : . : . :
JMFF037C12+ CTCGGAGTACGCGTACGAGGCGGAGGGTTTAGGGTTGGGGCGGCGTACACGCAGACCAGA
JMFS088F03+ CTCGGAGTACGCGTACGAGGCGGAGGGTTTAGGGTTGGGGCGGCGTACACGCAGACCAGA
JMFF026I15+ CTCGGAGTACGCGTACGAGGCGGAGGGTTTAGGGTTGGGGCGGCGTACACGCAGACCAGA
JMFF012D17+ CTCGGAGTACGCGTACGAGGCGGAGGGTTTAGGGTTGGGGCGGCGTACACGCAGACCAGA
                      ____________________________________________________________
consensus CTCGGAGTACGCGTACGAGGCGGAGGGTTTAGGGTTGGGGCGGCGTACACGCAGACCAGA
 
. : . : . : . : . : . :
JMFF037C12+ GACAGCAGCAGCCGATGGGGCAGTGGAAATCATATCCGTGAAGAATCTCTTCCGACGGCG
JMFS088F03+ GACAGCAGCAGCCGATGGGGCAGTGGAAATCATATCCGTGAAGAATCTCTTCCGACGGCG
JMFF026I15+ GACAGCAGCAGCCGATGGGGCAGTGGAAATCATATCCGTGAAGAATCTCTTCCGACGGCG
JMFF012D17+ GACAGCAGCAGCCGATGGGGCAGTGGAAATCATATCCGTGAAGAATCTCTTCCGACGGCG
JMSF008D09+ GGCG
                      ____________________________________________________________
consensus GACAGCAGCAGCCGATGGGGCAGTGGAAATCATATCCGTGAAGAATCTCTTCCGACGGCG
 
. : . : . : . : . : . :
JMFF037C12+ TCGCCTTTTGACTGGAGGTGGACCGGCGGGGAGCTGCTCTTCGGGCGCCGGAACCTGCTC
JMFS088F03+ TCGCCTTTTGACTGGAGGTGGACCGGCGGGGAGCTGCTCTTCGGGCGCCGGAACCTGCTC
JMFF026I15+ TCGCCTTTTGACTGGAGGTGGACCGGCGGGGAGCTGCTCTTCGGGCGCCGGAACCTGCTC
JMFF012D17+ TCGCCTTTTGACTGGAGGTGGACCGGCGGGGAGCTGCTCTTCGGGCGCCGGAACCTGCTC
JMSF008D09+ TCGCCTTTTGACTGGAGGTGGACCGGCGGGGAGCTGCTCTTCGGGCGCCGGAACCTGCTC
                      ____________________________________________________________
consensus TCGCCTTTTGACTGGAGGTGGACCGGCGGGGAGCTGCTCTTCGGGCGCCGGAACCTGCTC
 
. : . : . : . : . : . :
JMFF037C12+ CGCCTGAGAATCTGAAACGGCAGGCTCAGATGTCGTCTGGGGAGGCGAAGAATGGCCATT
JMFS088F03+ CGCCTGAGAATCTGAAACGGCAGGCTCAGATGTCGTCTGGGGAGGCGAAGAATGGCCATT
JMFF026I15+ CGCCTGAGAATCTGAAACGGCAGGCTCAGATGTCGTCTGGGGAGGCGAAGAATGGCCATT
JMFF012D17+ CGCCTGAGAATCTGAAACGGCAGGCTCAGATGTCGTCTGGGGAGGCGAAGAATGGCCATT
JMSF008D09+ CGCCTGAGAATCTGAAACGGCAGGCTCAGATGTCGTCTGGGGAGGCGAAGAATGGCCATT
                      ____________________________________________________________
consensus CGCCTGAGAATCTGAAACGGCAGGCTCAGATGTCGTCTGGGGAGGCGAAGAATGGCCATT
 
. : . : . : . : . : . :
JMFF037C12+ GTCAGGCACATTGTTGTTTGATTCGGTGGCTTGCTCGTCGGAGACAACATTATCGGCACA
JMFS088F03+ GTCAGGCACATTGTTGTTTGATTCGGTGGCTTGCTCGTCGGAGACAACATTATCGGCACA
JMFF026I15+ GTCAGGCACATTGTTGTTTGATTCGGTGGCTTGCTCGTCGGAGACAACATTATCGGCACA
JMFF012D17+ GTCAGGCACATTGTTGTTTGATTCGGTGGCTTGCTCGTCGGAGACAACATTATCGGCACA
JMSF008D09+ GTCAGGCACATTGTTGTTTGATTCGGTGGCTTGCTCGTCGGAGACAACATTATCGGCACA
                      ____________________________________________________________
consensus GTCAGGCACATTGTTGTTTGATTCGGTGGCTTGCTCGTCGGAGACAACATTATCGGCACA
 
. : . : . : . : . : . :
JMFF037C12+ GTCCGGCGGAGTATCGGCGGTTTCCATGAGTATATTTTCGAT
JMFS088F03+ GTCCGGCGGAGTATCGGCGGTTTCCATGAGTATATTTTCGATGG
JMFF026I15+ GTCCGGCGGAGTATCGGCGGTTTCCATGAGTATATTTTCGATGGTAAATCGGCGC
JMFF012D17+ GTCCGGCGGAGTATCGGCGGTTTCCATGAGTATATTTTCGATGGTAAATCGGCGC
JMSF008D09+ GTCCGGCGGAGTATCGGCGGTTTCCATGAGTATATTTTCGATGGTAAATCGGCGCGGAAC
                      ____________________________________________________________
consensus GTCCGGCGGAGTATCGGCGGTTTCCATGAGTATATTTTCGATGGTAAATCGGCGCGGAAC