Contig 009197:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006F07Sequence352009197 (4)gb|AAS79608.1|8e-50putative histone deacetylase [Ipomoea trifida]438011383 (5)dbj|BAF37798.1|2e-53hypothetical protein [Ipomoea trifida]
JMSF019C22Sequence237009197 (4)gb|AAS79608.1|9e-22putative histone deacetylase [Ipomoea trifida]702011383 (5)dbj|BAF37798.1|9e-97hypothetical protein [Ipomoea trifida]
JMSF038K08Sequence664009197 (4)gb|AAS79608.1|2e-140putative histone deacetylase [Ipomoea trifida]804011383 (5)emb|CDP06960.1|2e-111unnamed protein product [Coffea canephora]
JMSF044I15Sequence794009197 (4)gb|AAS79608.1|2e-131putative histone deacetylase [Ipomoea trifida]754011383 (5)emb|CDP06960.1|1e-111unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF044I15+                        TTTGCTAGCTACAAAGTGAACTTGATTGAGCANTAAATGGGTTTAAA
                      ____________________________________________________________
consensus                          TTTGCTAGCTACAAAGTGAACTTGATTGAGCANTAAATGGGTTTAAA
 
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JMSF044I15+           ATCTATGGCCCTGTTTGAATTTGACATTGAACAACAGTTATGGATTATGTAACACTACAA
                      ____________________________________________________________
consensus             ATCTATGGCCCTGTTTGAATTTGACATTGAACAACAGTTATGGATTATGTAACACTACAA
 
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JMSF038K08+                                                              CCTATCTGT
JMSF044I15+           ATACATACCGGTCTAAGAAAAACTAAGAGATAAGTGAAGAGAGTAAAGGTACCTATCTGT
                      ____________________________________________________________
consensus             ATACATACCGGTCTAAGAAAAACTAAGAGATAAGTGAAGAGAGTAAAGGTACCTATCTGT
 
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JMSF038K08+           AAAATAAAAGGCCTCTTCCACACCATCTCCATGATGTACATCAATATCAATATACAAAAC
JMSF044I15+           AAAATAAAAGGCCTCTTCCACACCATCTCCATGATGTACATCAATATCAATATACAAAAC
                      ____________________________________________________________
consensus             AAAATAAAAGGCCTCTTCCACACCATCTCCATGATGTACATCAATATCAATATACAAAAC
 
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JMSF038K08+           TCGGGGATGATATTTGAGAAGCTCCAAAATTCCCAGAACTAGATCATTGATATAACAAAA
JMSF044I15+           TCGGGGATGATATTTGAGAAGCTCCAAAATTCCCAGAACTAGATCATTGATATAACAAAA
                      ____________________________________________________________
consensus             TCGGGGATGATATTTGAGAAGCTCCAAAATTCCCAGAACTAGATCATTGATATAACAAAA
 
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JMSF038K08+           TCCTGAAGCCTCACACTTTTTGGCGTGGTGCAAACCACCAGCCCAATTTATGGCGACATC
JMSF044I15+           TCCTGAAGCCTCACACTTTTTGGCGTGGTGCAAACCACCAGCCCAATTTATGGCGACATC
                      ____________________________________________________________
consensus             TCCTGAAGCCTCACACTTTTTGGCGTGGTGCAAACCACCAGCCCAATTTATGGCGACATC
 
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JMSF038K08+           ACAGAGTTGATTGTTTAATCTACGCGCAGCATCTATTGTTCCTCCAGCATAAATTTGACA
JMSF044I15+           ACAGAGTTGATTGTTTAATCTACGCGCAGCATCTATTGTTCCACCAGCATAAATTTGACA
                      ____________________________________________________________
consensus             ACAGAGTTGATTGTTTAATCTACGCGCAGCATCTATTGTTCCTCCAGCATAAATTTGACA
 
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JMSF038K08+           AAACTCAAACAGGTTATCAAATACAGGGCAATCTTCTCCAAGATTATATCTTTTGAGGTC
JMSF044I15+           AAACTCAAACAGGTTATCAAATACAGGGCAATCTTCTCCAAGATTATATCTTTTGAGGTC
                      ____________________________________________________________
consensus             AAACTCAAACAGGTTATCAAATACAGGGCAATCTTCTCCAAGATTATATCTTTTGAGGTC
 
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JMSF038K08+           AATCCCAAATAAATGTTGAGTGTCAGGCGTTATCCGGTGCAGAAACTCAACGTAATCAGC
JMSF044I15+           AATCCCAAATAAATGTTGAGTGTCAGGCGTTATCCGGTGCAGAAACTCAACGTAATCAGC
JMSF006F07+                   ATAAATGTTGAGTGTCAGGCGTTATCCGGTGCAGAAACTCAACGTAATCAGC
                      ____________________________________________________________
consensus             AATCCCAAATAAATGTTGAGTGTCAGGCGTTATCCGGTGCAGAAACTCAACGTAATCAGC
 
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JMSF038K08+           TGAATGGAACTGCGCCAGCTCCATNGGATATGCCTTATGAGGCCTATAAATTTCCATCTT
JMSF044I15+           TGAATGGAACTGCGCCAGCTCCATTGGATATGCCTTATGAGGCCTATAAATTTCCATCTT
JMSF006F07+           TGAATGGAACTGCGCCAGCTCCATTGGATATGCCTTATGAGGCCTATAAATTTCCATCTT
                      ____________________________________________________________
consensus             TGAATGGAACTGCGCCAGCTCCATTGGATATGCCTTATGAGGCCTATAAATTTCCATCTT
 
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JMSF038K08+           GTTGTGGAGACCGTAAGCTAGAACCAGATGATGAGTCATACACAGCCGGTGCGGTTTCAT
JMSF044I15+           GTTGTGGAGACCGTAAGCTAGAACCAGATGATGAGTCATACACAGCCGGTGCGGTTTCAT
JMSF019C22+              GTGGAGACCGTAAGCTAGAACCAGATGATGAGTCATACACAGCCGGTGCGGTTTCAT
JMSF006F07+           GTTGTGGAGACCGTAAGCTAGAACCAGATGATGAGTCATACACAGCCGGTGCGGTTTCAT
                      ____________________________________________________________
consensus             GTTGTGGAGACCGTAAGCTAGAACCAGATGATGAGTCATACACAGCCGGTGCGGTTTCAT
 
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JMSF038K08+           CGGATGGTTTGGCCCAAAGTAGACATTCCCAACGTCCCCATCGTAGAAGTAGGAGATTCT
JMSF044I15+           CGGATGGTTTGGCCCAAAGTAGACATTCCCAACGTCCCCATCGTAGAAGTAGGAGATTCT
JMSF019C22+           CGGATGGTTTGGCCCAAAGTAGACATTCCCAACGTCCCCATCGTAGAAGTAGGAGATTCT
JMSF006F07+           CGGATGGTTTGGCCCAAAGTAGACATTCCCAACGTCCCCATCGTAGAAGTAGGAGATTCT
                      ____________________________________________________________
consensus             CGGATGGTTTGGCCCAAAGTAGACATTCCCAACGTCCCCATCGTAGAAGTAGGAGATTCT
 
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JMSF038K08+           GTCCTTGGAGCGCATTTTAGCGAAGAGCCTAAATGGAGGGAAAATCAGTGGGAGGGAGAG
JMSF044I15+           GTCCTTGGAGCGCATTTTAGCGAAGAGCCTAAATGGAGGGAAAATCAGTGGGAGGGAGAG
JMSF019C22+           GTCCTTGGAGCGCATTTTAGCGAAGAGCCTAAATGGAGGGAAAATCAGTGGGAGGGAGAG
JMSF006F07+           GTCCTTGGAGCGCATTTTAGCGAAGAGCCTAAATGGAGGGAAAATCAGTGGGAGGGAGAG
                      ____________________________________________________________
consensus             GTCCTTGGAGCGCATTTTAGCGAAGAGCCTAAATGGAGGGAAAATCAGTGGGAGGGAGAG
 
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JMSF038K08+           AGAGAGAGAGGGCGTACTGACTC                                     
JMSF044I15+           AGAGAGAGAGGGCGTACTGACTC                                     
JMSF019C22+           AGAGAGAGAGGGCGTACTGACTCAACGAGTTTTAGCCATGTATGAAATTCTGAATTCCCC
JMSF006F07+           AGAGAGAGAGGGCGTACTGACTCAACGAGTTTTAGCCATGTATGAAATTCTGAATTCCCC
                      ____________________________________________________________
consensus             AGAGAGAGAGGGCGTACTGACTCAACGAGTTTTAGCCATGTATGAAATTCTGAATTCCCC