Contig 009177:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021K22Sequence534009177 (4)ref|XP_003631289.2|3e-11PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Vitis vinifera] emb|CBI32060.3669009177 (4)ref|XP_003631289.2|7e-11PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Vitis vinifera] emb|CBI32060.3
JMSF003K01Sequence409009177 (4)725009177 (4)ref|XP_003631289.2|4e-10PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Vitis vinifera] emb|CBI32060.3

Alignment

This contig is upended


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rJMSF003K01- GCATAGATTC
                      ____________________________________________________________
consensus GCATAGATTC
 
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rJMSF003K01- CTACTAATGCATGCATGGCTGCTAACATTACAATAATTATACTCTCACACTTGTCACAAC
                      ____________________________________________________________
consensus CTACTAATGCATGCATGGCTGCTAACATTACAATAATTATACTCTCACACTTGTCACAAC
 
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rJMSF003K01- ACCAACAAATTACAAAACGAACAATAATTTTATATACATAAAACTATCTAACACTATTAA
rJMFF021K22- AAACGAACAATAATTTTATATACATAAAACTATCTAACACTATTAA
                      ____________________________________________________________
consensus ACCAACAAATTACAAAACGAACAATAATTTTATATACATAAAACTATCTAACACTATTAA
 
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rJMSF003K01- AAATCAAGATTCTCGTCAAATTTAGGTATCACGTACTCTACAACTGTCTCTCCCTTCAAC
rJMFF021K22- AAATCAAGATTCTCGTCAAATTTAGGTATCACGTACTCTACAACTGTCTCTCCCTTCAAC
                      ____________________________________________________________
consensus AAATCAAGATTCTCGTCAAATTTAGGTATCACGTACTCTACAACTGTCTCTCCCTTCAAC
 
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rJMSF003K01- TCAAGGAATGCACCACATGGCTAACTTCTTTCTCGATCTTTGGTGTTGTGTAATTAATGT
rJMFF021K22- TCAAGGAATGCACCACATGGCTAACTTCTTTCTCGATCTTTGGTGTTGTGTAATTAATGT
                      ____________________________________________________________
consensus TCAAGGAATGCACCACATGGCTAACTTCTTTCTCGATCTTTGGTGTTGTGTAATTAATGT
 
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rJMSF003K01- GTGAGTTTTCAAGCACGCTAAGCCTCGGCTTTTGTACTGTATTTCTTTGAAAAATTTCTC
rJMFF021K22- GTGAGTTTTCAAGCACGCTAAGCCTCGGCTTTTGTACTGTATTTCTTTGAAAAATTTCTC
                      ____________________________________________________________
consensus GTGAGTTTTCAAGCACGCTAAGCCTCGGCTTTTGTACTGTATTTCTTTGAAAAATTTCTC
 
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rJMSF003K01- GGGTTCTTTGTTCAACAGATCAGAGTTATCCCATAACCTATAACATCTTTTTTGCATGCA
rJMFF021K22- GGGTTCTTTGTTCAACAGATCAGAGTTATCCCATAACCTATAACATCTTTTTTGCATGCA
JMFF021K22+ GTTCAACAGATCAGAGTTATCCCATAACCTATAACATCTTTTTTGCATGCA
                      ____________________________________________________________
consensus GGGTTCTTTGTTCAACAGATCAGAGTTATCCCATAACCTATAACATCTTTTTTGCATGCA
 
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rJMSF003K01- TGGTGTTAAACTTACCCAACAATGTTAGTAGAACAAGTTGTATGTATATAGTCCCAACTT
rJMFF021K22- TGGTGTTAAACTTACCCAACAATGTTAGTAGAACAAGTTGTATGTATATAGTCCCAACTT
JMFF021K22+ TGGTGTTAAACTTACCCAACAATGTTAGTAGAACAAGTTGTATGTATATAGTCCCAACTT
                      ____________________________________________________________
consensus TGGTGTTAAACTTACCCAACAATGTTAGTAGAACAAGTTGTATGTATATAGTCCCAACTT
 
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rJMSF003K01- TGAGTAAATACATACAAGTTAAGATCCTCGAATCCTTGGTAGCTTAGTCTTCTTAGTCTC
rJMFF021K22- TGAGTAAATACATACAAGTTAAGATCCTCGAATCCTTGGTAGCTTAGTCTTCTTAGTCTC
JMFF021K22+ TGAGTAAATACATACAAGTTAAGATCCTCGAATCCTTGGTAGCTTAGTCTTCTTAGTCTC
                      ____________________________________________________________
consensus TGAGTAAATACATACAAGTTAAGATCCTCGAATCCTTGGTAGCTTAGTCTTCTTAGTCTC
 
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rJMSF003K01- ACCATGCATTATATTCATGGCTTGTCAAGCTCTCCTTTATAAACTCGGCCTGGAGACCGT
rJMFF021K22- ACCATGCATTATATTCATGGCTTGTCAAGCTCTCCTTTATAAACTCGGCCTGGAGACCGT
JMFF021K22+ ACCATGCATTATATTCATGGCTTGTCAAGCTCTCCTTTATAAACTCGGCCTGGAGACCGT
                      ____________________________________________________________
consensus ACCATGCATTATATTCATGGCTTGTCAAGCTCTCCTTTATAAACTCGGCCTGGAGACCGT
 
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rJMSF003K01- CGGGAGTTTCCCGCTCTTCTGTTATGGATAGGGTCAGGTCCATTTGGAACCTTTCTTTTG
rJMFF021K22- CGGGAGTTTCCCGCTCTTCTGTTATGGATAGGGTCAGGTCCATTTGGAACCTTTCTTTTG
JMFF021K22+ CGGGAGTTTCCCGCTCTTCTGTTATGGATAGGGTCAGGTCCATTTGGAACCTTTCTTTTG
                      ____________________________________________________________
consensus CGGGAGTTTCCCGCTCTTCTGTTATGGATAGGGTCAGGTCCATTTGGAACCTTTCTTTTG
 
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rJMSF003K01- CTCATGAAATTGAGATCTGTATGAACACTACTTGCAGGCTTCTCATTATCACCATCTTTT
rJMFF021K22- CTCATGAAATTGAGATCTGTATGAACACTACTTGCAGGCTTCTCATTATCACCATCTTTT
JMFF021K22+ CTCATGAAATTGAGATCTGTATGAACACTACTTGCAGGCTTCTCATTATCACCATCTTTT
JMSF003K01+ GAGATCTGTATGAACACTACTTGCAGGCTTCTCATTATCACCATCTTTT
                      ____________________________________________________________
consensus CTCATGAAATTGAGATCTGTATGAACACTACTTGCAGGCTTCTCATTATCACCATCTTTT
 
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rJMSF003K01- TGCATGCTCATATGCTTCANGTTTCCTCCTTCTCTTTCTCTACNATGTTGATGAT
rJMFF021K22- TGCATGCTCATATGCTTCATGTTTCCTCCTTCTCTTTCTCTACTATGTTGATGATGATGA
JMFF021K22+ TGCATGCTCATATGCTTCATGTTTCCTCCTTCTCTTTCTCTACTATGTTGATGATGATGA
JMSF003K01+ TGCATGCTCATATGCTTCATGTTTCCTCCTTCTCTTTCTCTACTATGTTGATGATGATGA
                      ____________________________________________________________
consensus TGCATGCTCATATGCTTCATGTTTCCTCCTTCTCTTTCTCTACTATGTTGATGATGATGA
 
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rJMFF021K22- TGATGANGTTTC
JMFF021K22+ TGATGAGGTTTCGTCGTCGTCTCCTCCATATTTAAAGCTCCAACCACCAATAACCCAACC
JMSF003K01+ TGATGAGGTTTCGTCGTCGTCTCCTCCATATTTAAAGCTCCAACCACCAATAACCCAACC
                      ____________________________________________________________
consensus TGATGAGGTTTCGTCGTCGTCTCCTCCATATTTAAAGCTCCAACCACCAATAACCCAACC
 
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JMFF021K22+ AGTCCTACCAATAACAGTGAACCATAAAAGGAAACCTTCCTACTCCTCAAATTACTACCC
JMSF003K01+ AGTCCTACCAATAACAGTGAACCATAAAAGGAAACCTTCCTACTCCTCAAATTACTACCC
                      ____________________________________________________________
consensus AGTCCTACCAATAACAGTGAACCATAAAAGGAAACCTTCCTACTCCTCAAATTACTACCC
 
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JMFF021K22+ A
JMSF003K01+ ATAACTTTTTTTTTTCTCTCTCTCTCTCTCTATATTATGTATGAAAGGGGGAGAGAGAGA
                      ____________________________________________________________
consensus ATAACTTTTTTTTTTCTCTCTCTCTCTCTCTATATTATGTATGAAAGGGGGAGAGAGAGA
 
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JMSF003K01+ AAATTAAACCAGGATTTTAGTTGAAATATTGGTAGGTATAGTAGTAGATGAAGATGAAGA
                      ____________________________________________________________
consensus AAATTAAACCAGGATTTTAGTTGAAATATTGGTAGGTATAGTAGTAGATGAAGATGAAGA
 
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JMSF003K01+ GGATGCTAGCTATCTAGTACTGTAGTGTTTGGCTTTGAAGGATGGATTTTACTTACATCC
                      ____________________________________________________________
consensus GGATGCTAGCTATCTAGTACTGTAGTGTTTGGCTTTGAAGGATGGATTTTACTTACATCC