| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003M10 | Sequence | 595 | 009170 (6) | ref|XP_004141864.1| | 9e-41 | PREDICTED: 50S ribosomal protein L7/L12-like [Cucumis sativus] ref|XP_004160938. | |||||
| JMFF032C08 | Sequence | 543 | 009170 (6) | ref|XP_004141864.1| | 4e-33 | PREDICTED: 50S ribosomal protein L7/L12-like [Cucumis sativus] ref|XP_004160938. | 709 | 009170 (6) | ref|XP_004141864.1| | 3e-67 | PREDICTED: 50S ribosomal protein L7/L12-like [Cucumis sativus] ref|XP_004160938. |
| JMFF034E12 | Sequence | 534 | 009170 (6) | ref|XP_004141864.1| | 3e-30 | PREDICTED: 50S ribosomal protein L7/L12-like [Cucumis sativus] ref|XP_004160938. | |||||
| JMSF003A19 | Sequence | 215 | 009170 (6) | 646 | 009170 (6) | ref|XP_004141864.1| | 3e-65 | PREDICTED: 50S ribosomal protein L7/L12-like [Cucumis sativus] ref|XP_004160938. | |||
This contig is upended
. : . : . : . : . : . :
rJMSF003A19- GTCTGAGTATATCGGCTAATGAGCATTGCAGG
____________________________________________________________
consensus GTCTGAGTATATCGGCTAATGAGCATTGCAGG
. : . : . : . : . : . :
rJMSF003A19- CTTTGCAGCAATATGAACAATGGGGCACAAAAATTTGATCAAAAACATAAAACTGAAAAT
____________________________________________________________
consensus CTTTGCAGCAATATGAACAATGGGGCACAAAAATTTGATCAAAAACATAAAACTGAAAAT
. : . : . : . : . : . :
rJMSF003A19- CCATTTTCAATGACAGTTGTGTTATTCTACAATGAAAAAGAACAAAACTTGATTACTCGA
rJMFF032C08- ATGACAGTTGTGTTATTCTACAATGAAAAAGAACAAAACTTGATTACTCGA
____________________________________________________________
consensus CCATTTTCAATGACAGTTGTGTTATTCTACAATGAAAAAGAACAAAACTTGATTACTCGA
. : . : . : . : . : . :
rJMSF003A19- GGACTGCAGTAGCACCCACTCCCTTAAGCTTGTCGATGAGGGCATTAGCTTCTTCTTTGC
JMFF003M10+ TTGC
rJMFF032C08- GGACTGCAGTAGCACCCACTCCCTTAAGCTTGTCGATGAGGGCATTAGCTTCTTCTTTGC
____________________________________________________________
consensus GGACTGCAGTAGCACCCACTCCCTTAAGCTTGTCGATGAGGGCATTAGCTTCTTCTTTGC
. : . : . : . : . : . :
rJMSF003A19- TGAGCCCTTTCTTCACCACCACCGGAACTTTCTCCACCAAATCCTTTGCTTCCTTCAAAC
JMFF032C08+ CTTCCTTCAAAC
JMFF003M10+ TGAGCCCTTTCTTCACCACCACCGGAACTTTCTCCACCAAATCCTTTGCTTCCTTCAAAC
rJMFF032C08- TGAGCCCTTTCTTCACCACCACCGGAACTTTCTCCACCAAATCCTTTGCTTCCTTCAAAC
____________________________________________________________
consensus TGAGCCCTTTCTTCACCACCACCGGAACTTTCTCCACCAAATCCTTTGCTTCCTTCAAAC
. : . : . : . : . : . :
rJMSF003A19- CCAAATCTGTAAAAGCCCTTATCTCCTTAATGACCTTGATCTTGGCTGCTGCGTCGAACT
JMFF032C08+ CCAAATCTGTAAAAGCCCTTATCTCCTTAATGACCTTGATCTTGGCTGCTGCGTCGAACT
JMFF003M10+ CCAAATCTGTAAAAGCCCTTATCTCCTTAATGACCTTGATCTTGGCTGCTGCGTCGAACT
rJMFF032C08- CCAAATCTGTAAAAGCCCTTATCTCCTTAATGACCTTGATCTTGGCTGCTGCGTCGAACT
JMFF034E12+ ATCTGTAAAAGCCCTTATCTCCTTAATGACCTTGATCTTGGCTGCTGCGTCGAACT
____________________________________________________________
consensus CCAAATCTGTAAAAGCCCTTATCTCCTTAATGACCTTGATCTTGGCTGCTGCGTCGAACT
. : . : . : . : . : . :
rJMSF003A19- TCTCCAGCTTAAGATCAAACACGGTCTTCTCTGCGGCCTTGGTTTCAGTGGCCGCAGCCC
JMFF032C08+ TCTCCAGCTTAAGATCAAACACGGTCTTCTCTGCGGCCTTGGTTTCAGTGGCCGCAGCCC
JMFF003M10+ TCTCCAGCTTAAGATCAAACACGGTCTTCTCTGCGGCCTTGGTTTCAGTGGCCGCAGCCC
rJMFF032C08- TCTCCAGCTTAAGATCAAACACGGTCTTCTCTGCGGCCTTGGTTTCAGTGGCCGCAGCCC
JMFF034E12+ TCTCCAGCTTAAGATCAAACACGGTCTTCTCTGCGGCCTTGGTTTCAGTGGCCGCAGCCC
____________________________________________________________
consensus TCTCCAGCTTAAGATCAAACACGGTCTTCTCTGCGGCCTTGGTTTCAGTGGCCGCAGCCC
. : . : . : . : . : . :
rJMSF003A19- CGG-AAGATGAAGAGCCCGATGAATCTAAGCCGGAGACTGCCGGTCCGTACCGGTTGAGG
JMFF032C08+ CGGAAAGATGAAGAGCCCGATGAATCTAAGCCGGAGACTGCCGGTCCGTACCGGTTGAGG
JMFF003M10+ CGGAAAGATGAAGAGCCCGATGAATCTAAGCCGGAGACTGCCGGTCCGTACCGGTTGAGG
rJMFF032C08- CGG-AAGATGAAGAGCCCGATGAATCTAAGCCGGAGACTGCCGGTCCGTACCGGTTGAGG
JMFF034E12+ CGGAAAGATGAAGAGCCCGATGAATCTAAGCCGGAGACTGCCGGTCCGTACCGGTTGAGG
____________________________________________________________
consensus CGGAAAGATGAAGAGCCCGATGAATCTAAGCCGGAGACTGCCGGTCCGTACCGGTTGAGG
. : . : . : . : . : . :
rJMSF003A19- CCCATTTTGTGCCGGAAGAGGATGGCATAGTCGTGCCTTTCCAGCTTGGTGAGGTCCAGA
JMFF032C08+ CCCATTTTGTGCCGGAAGAGGATGGCATAGTCGTGCCTTTCCAGCTTGGTGAGGTCCAGA
JMFF003M10+ CCCATTTTGTGCCGGAAGAGGATGGCATAGTCGTGCCTTTCCAGCTTGGTGAGGTCCAGA
rJMFF032C08- CCCATTTTGTGCCGGAAGAGGATGGCATAGTCGTGCCTTTCCAGCTTGGTGAGGTCCAGA
JMFF034E12+ CCCATTTTGTGCCGGAAGAGGATGGCATAGTCGTGCCTTTCCAGCTTGGTGAGGTCCAGA
____________________________________________________________
consensus CCCATTTTGTGCCGGAAGAGGATGGCATAGTCGTGCCTTTCCAGCTTGGTGAGGTCCAGA
. : . : . : . : . : . :
rJMSF003A19- AGCTCGCCAGCGATGCGCTCCAGTTTCTGGGTTCGCGTTTCCGTCGCAGTGCAGAGAGGC
JMFF032C08+ AGCTCGCCAGCGATGCGCTCCAGTTTCTGGGTTCGCGTTTCCGTCGCAGTGCAGAGAGGC
JMFF003M10+ AGCTCGCCAGCGATGCGCTCCAGTTTCTGGGTTCGCGTTTCCGTCGCAGTGCAGAGAGGC
rJMFF032C08- AGCTCGCCAGCGATGCGCTCCAGTTTCTGGGTTCGCGTTTCCGTCGCAGTGCAGAGAGGC
JMFF034E12+ AGCTCGCCAGCGATGCGCTCCAGTTTCTGGGTTCGCGTTTCCGTCGCAGTGCAGAGAGGC
____________________________________________________________
consensus AGCTCGCCAGCGATGCGCTCCAGTTTCTGGGTTCGCGTTTCCGTCGCAGTGCAGAGAGGC
. : . : . : . : . : . :
rJMSF003A19- CGACACNGTAATGGTGTACGGCGGTGGGAGAGAANTCTTGCNAGAGATTTGGAGGGAAAT
JMFF032C08+ CGACACAGTAATGGTGTACGGCGGTGGGAGAGAAGTCTTGCGAGAGATTTGGAGGGAAAT
JMFF003M10+ CGACACAGTAATGGTGTACGGCGGTGGGAGAGAAGTCTTGCGAGAGATTTGGAGGGAAAT
rJMFF032C08- CGACACAGTAATGGTGTACGGCGGTGGGAGAGAAGTCTTGCGAGAGATTTGGAGGGAAAT
JMFF034E12+ CGACACAGTAATGGTGTACGGCGGTGGGAGAGAAGTCTTGCGAGAGATTTGGAGGGAAAT
JMSF003A19+ GGGAGAGAAGTCTNTCGAGAGATTTGGAGGGAAAT
____________________________________________________________
consensus CGACACAGTAATGGTGTACGGCGGTGGGAGAGAAGTCTTGCGAGAGATTTGGAGGGAAAT
. : . : . : . : . : . :
rJMSF003A19- CTCGACNTTGTGGAA
JMFF032C08+ CTCGACATTGTGGAAGCCATTTTTAGGAGATTAAAACCCTAATCTTTCTTCTATCTGTTC
JMFF003M10+ CTCGACATTGTGGAAGCCATTTTTAGGAGATTAAAACCCTAATCTTTCTTCTATCTGTTC
rJMFF032C08- CTCGACATTGTGGAAGCCATTTTTAGGAGATTAAAACCCTAATCTTTCTTCTATCTGTTC
JMFF034E12+ CTCGACATTGTGGAAGCCATTTTTAGGAGATTAAAACCCTAATCTTTCTTCTATCTGTTC
JMSF003A19+ CTCGACATNGTGGAAGCCATTTTTAGGAGATTAAAACCCTAATCTTTCTTCTATCTGTTC
____________________________________________________________
consensus CTCGACATTGTGGAAGCCATTTTTAGGAGATTAAAACCCTAATCTTTCTTCTATCTGTTC
. : . : . : . : . : . :
JMFF032C08+ CTACAGCATCTATGAGAAGAGAAGGTGATTATGAGCAGTACACTGCTGAGGTTTCAACTA
JMFF003M10+ CTACAGCATCTATGAGAAGAGAAGGTGATTATGAGCAGTACACTGCTGAGGTTTCAACTA
rJMFF032C08- CTACAGCATCTATGAGAAGAGAAGGTGATTATGAGCAGTACACTGCTGAGGTTTCNACTA
JMFF034E12+ CTACAGCATCTATGAGAAGAGAAGGTGATCATGAGCAGTACACTGCTGAGGTTTCAACTA
JMSF003A19+ CTACAGCATCTATGAGAAGAGAAGGTGATTATGAGCAGTACACTGCTGAGGTTTCAACTA
____________________________________________________________
consensus CTACAGCATCTATGAGAAGAGAAGGTGATTATGAGCAGTACACTGCTGAGGTTTCAACTA
. : . : . : . : . : . :
JMFF032C08+ GGGTTCTAAGATGCGACTCTCATCTCTCAGGGTCAATTTCTATTTTTTCTT
JMFF003M10+ GGGTTCTAAGATGCGACTCTCATCTCTCAGGGTCAATTTCTATTTTTTCTT
rJMFF032C08- GGGTTCTAAGATGCGACTCTCATCTCTCANGGTCAATTTCTATTTTTTCTT
JMFF034E12+ GGGTTCTAAGATGCGACTCTCATCTCTCAGGGTCAATTTCTATTTTTTCTT
JMSF003A19+ GGGTTCTAAGATGCGACTCTCATCTCTCAGGGTCAATTTCTATTTTTTCTTAATTTACCC
____________________________________________________________
consensus GGGTTCTAAGATGCGACTCTCATCTCTCAGGGTCAATTTCTATTTTTTCTTAATTTACCC