clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF040K06 | Sequence | 545 | 009163 (4) | ref|XP_004236349.1| | 7e-64 | PREDICTED: uncharacterized protein LOC778252 [Solanum lycopersicum] | 821 | 013788 (4) | ref|XP_006351490.1| | 3e-79 | PREDICTED: uncharacterized protein LOC102591466 isoform X1 [Solanum tuberosum] |
JMSF002C06 | Sequence | 299 | 009163 (4) | ref|XP_009410652.1| | 73.2 | PREDICTED: uncharacterized protein LOC103992598 [Musa acuminata subsp. malaccen | 713 | 013788 (4) | gb|AAS67373.1| | 6e-73 | CONSTANS interacting protein 5, partial [Solanum lycopersicum] |
JMSF003G03 | Sequence | 355 | 009163 (4) | ref|XP_009410652.1| | 136 | PREDICTED: uncharacterized protein LOC103992598 [Musa acuminata subsp. malaccen | 777 | 013788 (4) | ref|XP_006351490.1| | 8e-85 | PREDICTED: uncharacterized protein LOC102591466 isoform X1 [Solanum tuberosum] |
JMSF040M09 | Sequence | 620 | 009163 (4) | ref|XP_004236349.1| | 8e-75 | PREDICTED: uncharacterized protein LOC778252 [Solanum lycopersicum] | 902 | 013788 (4) | ref|XP_006351490.1| | 2e-104 | PREDICTED: uncharacterized protein LOC102591466 isoform X1 [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMSF040M09+ CTATAGTCAACCCGTTCTGCCATCAT
____________________________________________________________
consensus CTATAGTCAACCCGTTCTGCCATCAT
. : . : . : . : . : . :
JMSF040M09+ CTTGTGCGCCTCCCTAATGAACTCCAGCTCCTTCCGATCCACCTCCCATCCCCTGGGAGG
JMFF040K06+ TGGGAGG
____________________________________________________________
consensus CTTGTGCGCCTCCCTAATGAACTCCAGCTCCTTCCGATCCACCTCCCATCCCCTGGGAGG
. : . : . : . : . : . :
JMSF040M09+ CCAATCCCGGGGCGGCACGTGGCGGACCACCAGCGGCCCGGCCCACGACGTTGTCAGAGG
JMFF040K06+ CCAATCCCGGGGCGGCACGTGGCGGACCACCAGCGGCCCGGCCCACGACGTTGTCAGAGG
____________________________________________________________
consensus CCAATCCCGGGGCGGCACGTGGCGGACCACCAGCGGCCCGGCCCACGACGTTGTCAGAGG
. : . : . : . : . : . :
JMSF040M09+ CTCGGGGATTTCTCCCTTTATCTCGAACTGCTTAGCGAGGTACTCGTCTTCCGTTAACCC
JMFF040K06+ CTCGGGGATTTCTCCCTTTATCTCGAACTGCTTAGCGAGGTACTCGTCTTCCGTTAACCC
____________________________________________________________
consensus CTCGGGGATTTCTCCCTTTATCTCGAACTGCTTAGCGAGGTACTCGTCTTCCGTTAACCC
. : . : . : . : . : . :
JMSF040M09+ CATCTCCTCAATTTTCTTCTTCCGGTAATTAGGATTGAGCATTTTGAAGGCTTCGATGGC
JMSF003G03+ CTTCTTCCGGTAATTAGGATTGAGCATTTTGAAGGCTTCGATGGC
JMFF040K06+ CATCTCCTCAATTTTCTTCTTCCGGTAATTAGGATTGAGCATTTTGAAGGCTTCGATGGC
____________________________________________________________
consensus CATCTCCTCAATTTTCTTCTTCCGGTAATTAGGATTGAGCATTTTGAAGGCTTCGATGGC
. : . : . : . : . : . :
JMSF040M09+ CTCCGGCGACTGAAGCGGGACCTCCTCTCCCTCATTCAGGGATTTCCGAGCAAAATCAGC
JMSF003G03+ CTCCGGCGACTGAAGCGGGACCTCCTCTCCCTCATTCAGGGATTTCCGAGCAAAATCAGC
JMFF040K06+ CTCCGGCGACTGAAGCGGGACCTCCTCTCCCTCATTCAGGGATTTCCGAGCAAAATCAGC
____________________________________________________________
consensus CTCCGGCGACTGAAGCGGGACCTCCTCTCCCTCATTCAGGGATTTCCGAGCAAAATCAGC
. : . : . : . : . : . :
JMSF040M09+ TTCCGGAGTGAGGATTTCCTCCCAGGGAGCCCAGCCTCGCTCGACCCAGTTACGGCGTCG
JMSF003G03+ TTCCGGAGTGAGGATTTCCTCCCAGGGAGCCCAGCCTCGCTCGACCCAGTTACGGCGTCG
JMFF040K06+ TTCCGGAGTGAGGATTTCCTCCCAGGGAGCCCAGCCTCGCTCGACCCAGTTACGGCGTCG
JMSF002C06+ TCCGGAGTGAGGATTTCCTCCCAGGGAGCCCAGCCTCGCTCGACCCAGTTACGGCGTCG
____________________________________________________________
consensus TTCCGGAGTGAGGATTTCCTCCCAGGGAGCCCAGCCTCGCTCGACCCAGTTACGGCGTCG
. : . : . : . : . : . :
JMSF040M09+ AGCTTCCTCTTCGGATTCTTTCTCTTTTGGCCTGAAGGACTGGAGAAAGGCTTCGTCGTC
JMSF003G03+ AGCTTCCTCTTCGGATTCTTTCTCTTTTGGCCTGAAGGACTGGAGAAAGGCTTCGTCGTC
JMFF040K06+ AGCTTCCTCTTCGGATTCTTTCTCTTTTGGCCTGAAGGACTGGAGAAAGGCTTCGTCGTC
JMSF002C06+ AGCTTCCTCTTCGGATTCTTTCTCTTTTGGCCTGAAGGACTGGAGAAAGGCTTCGTCGTC
____________________________________________________________
consensus AGCTTCCTCTTCGGATTCTTTCTCTTTTGGCCTGAAGGACTGGAGAAAGGCTTCGTCGTC
. : . : . : . : . : . :
JMSF040M09+ TTCGCCGACCGGGAATT-ATCGGACTTGTAGCAGCTAGCGGAGGTGAGGGTGGGTTTGGC
JMSF003G03+ TTCGCCGACCGGGAATTCATCGGACTTGTAGAAGCTAGCGGAGGTGAGGGTGGGTTTGGC
JMFF040K06+ TTCGCCGACCGGGAATTCATCGGACTTGTAGCAGCTAGCGGAGGTGAGGGTGGGTTTGGC
JMSF002C06+ TTCGCCGACCGGGAATTCATCGGACTTGTAGCAGCTAGCGGAGGTGAGGGTGGGTTTGGC
____________________________________________________________
consensus TTCGCCGACCGGGAATTCATCGGACTTGTAGCAGCTAGCGGAGGTGAGGGTGGGTTTGGC
. : . : . : . : . : . :
JMSF040M09+ GGCAAGGGGGGTGGGAAACAATTGGACGCGAAGATGGGGTTTTGCGAGGGTTTTAGGCGA
JMSF003G03+ GGCAAGGGGGGTGGGAAACAATTGGACGCGAAGATGGGGTTTTGCGAGGGTTTTAGGCGA
JMFF040K06+ GGCAAGGGGGGTGGGAAACAATTGGACGCGAAGATGGGGTTTTGCGAGGGTTTTAGGCGA
JMSF002C06+ GGCAAGGGGGGTGGGAAACAATTGGACGCGAAGATGGGGTTTTGCGAGGGTTTTAGGCGA
____________________________________________________________
consensus GGCAAGGGGGGTGGGAAACAATTGGACGCGAAGATGGGGTTTTGCGAGGGTTTTAGGCGA
. : . : . : . : . : . :
JMSF040M09+ TGAAAATGTGAAGAAGAAAGAGGAAAGAGTTTGCAGAGAGTGCATTCTTCTGCT
JMSF003G03+ TGAAAATGT
JMFF040K06+ TGAAAATGTGAAGAAGAAAGAGGAAAGAGTTTGCAGAGAGTGCATTCTTCTGCT
JMSF002C06+ TGAAAATGTGAAGAAGAAAGAGGAAAGAGTTTGCAGAGAGTGCATTCTTCTGCTATAATC
____________________________________________________________
consensus TGAAAATGTGAAGAAGAAAGAGGAAAGAGTTTGCAGAGAGTGCATTCTTCTGCTATAATC