Contig 009159:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001L09Sequence460009159 (2)ref|XP_004238972.1|2e-22PREDICTED: uncharacterized protein At1g26090, chloroplastic [Solanum lycopersic749001263 (2)ref|XP_009761782.1|1e-45PREDICTED: uncharacterized protein At1g26090, chloroplastic isoform X2 [Nicotia
JMSF003H11Sequence232009159 (2)747001263 (2)ref|XP_009761782.1|6e-45PREDICTED: uncharacterized protein At1g26090, chloroplastic isoform X2 [Nicotia

Alignment

This contig is upended


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JMSF001L09+                               CAGTTCAGAAGATATTCGGCTGTAGGATCTTGGGAATGAA
                      ____________________________________________________________
consensus                                 CAGTTCAGAAGATATTCGGCTGTAGGATCTTGGGAATGAA
 
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JMSF001L09+           TAACCAAGTACGTTTTGAGCCCTGCCATAGCATAATGCTGAGCAGCGAAAACAGCAGAGG
                      ____________________________________________________________
consensus             TAACCAAGTACGTTTTGAGCCCTGCCATAGCATAATGCTGAGCAGCGAAAACAGCAGAGG
 
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JMSF001L09+           TGGTTTTACCAGAACCGCCTTTACCCAAGAAAGTGACCAATCTGGGTGGCTTATCAGCGG
                      ____________________________________________________________
consensus             TGGTTTTACCAGAACCGCCTTTACCCAAGAAAGTGACCAATCTGGGTGGCTTATCAGCGG
 
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JMSF001L09+           CTGAATTAGCGGCAGCTGCCATGGCCAAAGCCCCTTTCTTCCTCCTTGATGGGTTTAGTA
                      ____________________________________________________________
consensus             CTGAATTAGCGGCAGCTGCCATGGCCAAAGCCCCTTTCTTCCTCCTTGATGGGTTTAGTA
 
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JMSF003H11+                   GGGAAATCGAGTTTTGGGATTGAAGATGAAGGCAAAAATGGTGTTAGGAGGA
JMSF001L09+           ATGGAGGGGGGAAATCGAGTTTTGGGATTGAAGATGAAGGCAAAAATGGTGTTAGGAGGA
                      ____________________________________________________________
consensus             ATGGAGGGGGGAAATCGAGTTTTGGGATTGAAGATGAAGGCAAAAATGGTGTTAGGAGGA
 
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JMSF003H11+           ATTGGGGATTTGAAGAAGAGGAAGAAGCCATAGATTTGCAGTCTAGGAATCGAACGTGAC
JMSF001L09+           ATTGGGGATTTGAAGAAGAGGAAGAAGCCATAGATTTGCAGTCTAGGAATCGAACGTGAC
                      ____________________________________________________________
consensus             ATTGGGGATTTGAAGAAGAGGAAGAAGCCATAGATTTGCAGTCTAGGAATCGAACGTGAC
 
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JMSF003H11+           TATGAATTGGTTCCTATTATTCTTTTCTTTTTATCATAAAAATTGATTCTTGAAAGTTTG
JMSF001L09+           TATGAATTGGTTCCTATTATTCTTTTCTTTTTATCATAAAAATTGATTCTTGAAAGTTTG
                      ____________________________________________________________
consensus             TATGAATTGGTTCCTATTATTCTTTTCTTTTTATCATAAAAATTGATTCTTGAAAGTTTG
 
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JMSF003H11+           ACAACTCTTTCAATCAAACTCTTTTTGCCTAATTTTATGGAGTGAAGGAATCCAACCATC
JMSF001L09+           ACAACTCTTTCAATCAAACTCTTTTTGCCTAATTTTATGGAGTGAAGGAATCCAACCATC
                      ____________________________________________________________
consensus             ACAACTCTTTCAATCAAACTCTTTTTGCCTAATTTTATGGAGTGAAGGAATCCAACCATC