Contig 009157:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007I10Sequence541009157 (3)ref|XP_011070210.1|2e-51PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Sesamum indicum]744012475 (3)ref|XP_002517267.1|1e-68nitrate transporter, putative [Ricinus communis] gb|EEF45060.1| nitrate transpor
JMFF049P15Sequence620009157 (3)ref|XP_002517267.1|1e-48nitrate transporter, putative [Ricinus communis] gb|EEF45060.1| nitrate transpor506012475 (3)ref|XP_010055631.1|2e-17PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Eucalyptus grandis] gb|KCW90002.1|
JMSF001J23Sequence202009157 (3)797012475 (3)ref|XP_002517267.1|3e-73nitrate transporter, putative [Ricinus communis] gb|EEF45060.1| nitrate transpor

Alignment

This contig is upended


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JMFF049P15+                                                  GAACCAATAGATGTCAGGAGT
                      ____________________________________________________________
consensus                                                    GAACCAATAGATGTCAGGAGT
 
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JMFF049P15+           AGACAGATATAGAGAACCCAGAGCTGCAGGTTTGAAGCTTCCGTGCAGTTCTTCTTGGTG
                      ____________________________________________________________
consensus             AGACAGATATAGAGAACCCAGAGCTGCAGGTTTGAAGCTTCCGTGCAGTTCTTCTTGGTG
 
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JMFF007I10+                 GTGGAGGACGGAGCTGTGGCATGATTGCCGAGGTAGTGATACTTACCATTCCCA
JMFF049P15+           GGGCATGTGGAGGACGGAGCTGTGGCATGATTGCCGAGGTAGTGATACTTACCATTCCCA
                      ____________________________________________________________
consensus             GGGCATGTGGAGGACGGAGCTGTGGCATGATTGCCGAGGTAGTGATACTTACCATTCCCA
 
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JMFF007I10+           ACACATAAATGATAGATCCAACAATGATAGTCCAAAATCGGCCAGCAAAAGAATCAGCAA
JMFF049P15+           ACACATAAATGATAGATCCAACAATGATAGTCCAAAATCGGCCAGCAAAAGAATCAGCAA
                      ____________________________________________________________
consensus             ACACATAAATGATAGATCCAACAATGATAGTCCAAAATCGGCCAGCAAAAGAATCAGCAA
 
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JMFF007I10+           TTAGAGCACCANCAAGCGGCATGAAATTGGAGGTTCCACCAAAGTTGGTAAGGGTATTAG
JMFF049P15+           TTAGAGCACCAACAAGCGGCATGAAATTGGAGGTTCCACCAAAGTTGGTAAGGGTATTAG
                      ____________________________________________________________
consensus             TTAGAGCACCAACAAGCGGCATGAAATTGGAGGTTCCACCAAAGTTGGTAAGGGTATTAG
 
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JMFF007I10+           ATGCCTTAACAAGAGGCAAATTTAGCACCTCTGTCAGGTATGTTATCATGTTGGCATGAA
JMFF049P15+           ATGCCTTAACAAGAGGCAAATTTAGCACCTCTGTCAGGTATGTTATCATGTTGGCATGAA
                      ____________________________________________________________
consensus             ATGCCTTAACAAGAGGCAAATTTAGCACCTCTGTCAGGTATGTTATCATGTTGGCATGAA
 
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JMFF007I10+           AACCANCANCCGCAAATCTATCGCATATTTCATTAGCAAGGATAAATGGCATTGTTCTAA
JMFF049P15+           AACCAACAGCCGCAAATCTATCGCATATTTCATTAGCAAGGATAAATGGCATTGTTCTAA
                      ____________________________________________________________
consensus             AACCAACAGCCGCAAATCTATCGCATATTTCATTAGCAAGGATAAATGGCATTGTTCTAA
 
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JMFF007I10+           TGCCACCAAGCTTCCTCTTCCTGCCACTGCTACTTGTTTTCTTCTCCTCTTCTTCTCCAT
JMFF049P15+           TGCCACCAAGCTTCCTCTTCCTGCCACTGCTACTTGTTTTCTTCTCCTCTTCTTCTCCAT
JMSF001J23+                                                 TTCTTCTCCTCTTCTTCTCCAT
                      ____________________________________________________________
consensus             TGCCACCAAGCTTCCTCTTCCTGCCACTGCTACTTGTTTTCTTCTCCTCTTCTTCTCCAT
 
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JMFF007I10+           TTTTAAGAGCTTTGTCCTCCACCTTCATGTNTGCACCATCCATGTTTGGCCTGCCTGCAG
JMFF049P15+           TTTTAAGAGCTTTGTCCTCCACCTTCATGTCTGCACCATCCATGTTTGGCCTGCCTGCAG
JMSF001J23+           TTTTAAGAGCTTTGTCCTCCACCTTCATGTCTGCACCATCCATGTTTGGCCTGCCTGCAG
                      ____________________________________________________________
consensus             TTTTAAGAGCTTTGTCCTCCACCTTCATGTCTGCACCATCCATGTTTGGCCTGCCTGCAG
 
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JMFF007I10+           CAGGAAATATATATATGCAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAAAGGG
JMFF049P15+           CAGGAAATATATATATGCAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAAAGGG
JMSF001J23+           CAGGAAATATATATATGCAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAAAGGG
                      ____________________________________________________________
consensus             CAGGAAATATATATATGCAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAAAGGG
 
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JMFF007I10+           AGAATATATATAGATTTGTTTTGTAATTGCAGAAGCTGTATGTGCAGGAATTGAACA   
JMFF049P15+           AGAATATATATAGATTTGTTTTGTAATTGCAGAAGCTGTATGTGCAGGAATTGAACA   
JMSF001J23+           AGAATATATATAGATTTGTTTTGTAATTGCAGAAGCTGTATGTGCAGGAATTGAACACTC
                      ____________________________________________________________
consensus             AGAATATATATAGATTTGTTTTGTAATTGCAGAAGCTGTATGTGCAGGAATTGAACACTC