Contig 009104:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS060F05Sequence626009104 (3)
JMFS097E11Sequence623009104 (3)
JMFS129H04Sequence601009104 (3)

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS060F05+ TCCCG
                      ____________________________________________________________
consensus TCCCG
 
. : . : . : . : . : . :
JMFS060F05+ AAATGATGAGACCTAAGCCAGCATGGAACACATAGTATAAGATAAGAATATTATGTTCTC
JMFS097E11+ ATAGTATAAGATAAGAATATTATGTTCTC
                      ____________________________________________________________
consensus AAATGATGAGACCTAAGCCAGCATGGAACACATAGTATAAGATAAGAATATTATGTTCTC
 
. : . : . : . : . : . :
JMFS060F05+ TTCCTTTTTTACAATACTGATCACCCAACCATTTGATGCTCAAACTGGCTTAGCTCCCAT
JMFS097E11+ TTCCTTTTTTACAATACTGATCACCCAACCATTTGATGCTCAAACTGGCTTAGCTCCCAT
                      ____________________________________________________________
consensus TTCCTTTTTTACAATACTGATCACCCAACCATTTGATGCTCAAACTGGCTTAGCTCCCAT
 
. : . : . : . : . : . :
JMFS060F05+ AAAATCAGACGTCTTAGAGGTGAATAATATGAAGTGAAATAGCCAAAAAAAAAAAAAACA
JMFS097E11+ AAAATCAGACGTCTTAGAGGTGAATAATATGAAGTGAAATAGCCAAAAAAAAAAAAAACA
JMFS129H04+ A
                      ____________________________________________________________
consensus AAAATCAGACGTCTTAGAGGTGAATAATATGAAGTGAAATAGCCAAAAAAAAAAAAAACA
 
. : . : . : . : . : . :
JMFS060F05+ AACACTTGTTCTAGACATAGTAGGAGAAAGAAAGGTAGAAAGTAGAAACAGATCTCTCCA
JMFS097E11+ AACACTTGTTCTAGACATAGTAGGAGAAAGAAAGGTAGAAAGTAGAAACAGATCTCTCCA
JMFS129H04+ AACACTTGTTCTAGACATAGTAGGAGAAAGAAAGGTAGAAAGTAGAAACAGATCTCTCCA
                      ____________________________________________________________
consensus AACACTTGTTCTAGACATAGTAGGAGAAAGAAAGGTAGAAAGTAGAAACAGATCTCTCCA
 
. : . : . : . : . : . :
JMFS060F05+ CCATTCTTTACTGTTTCACGCTTACAATTCTAACCAAGAAAAGAACATTGCTTTCTTGCC
JMFS097E11+ CCATTCTTTACTGTTTCACGCTTACAATTCTAACCAAGAAAAGAACATTGCTTTCTTGCC
JMFS129H04+ CCATTCTTTACTGTTTCACGCTTACAATTCTAACCAAGAAAAGAACATTGCTTTCTTGCC
                      ____________________________________________________________
consensus CCATTCTTTACTGTTTCACGCTTACAATTCTAACCAAGAAAAGAACATTGCTTTCTTGCC
 
. : . : . : . : . : . :
JMFS060F05+ AACAGAAGCAAAGGAGGAGACTTGTCAACACAGAGAACTAAAGAAACCCAGCCAAAAAAA
JMFS097E11+ AACAGAAGCAAAGGAGGAGACTTGTCAACACAGAGAACTAAAGAAACCCAGCCAAAAAAA
JMFS129H04+ AACAGAAGCAAAGGAGGAGACTTGTCAACACAGAGAACTAAAGAAACCCAGCCAAAAAAA
                      ____________________________________________________________
consensus AACAGAAGCAAAGGAGGAGACTTGTCAACACAGAGAACTAAAGAAACCCAGCCAAAAAAA
 
. : . : . : . : . : . :
JMFS060F05+ ATAAAAAATAAAAAATAAAACAGGAAGCCAAGCTGACAAGGGCTTTTTGCTAGTTTGAAA
JMFS097E11+ ATAAAAAATAAAAAATAAAACAGGAAGCCAAGCTGACAAGGGCTTTTTGCTAGTTTGAAA
JMFS129H04+ ATAAAAAATAAAAAATAAAACAGGAAGCCAAGCTGACAAGGGCTTTTTGCTAGTTTGAAA
                      ____________________________________________________________
consensus ATAAAAAATAAAAAATAAAACAGGAAGCCAAGCTGACAAGGGCTTTTTGCTAGTTTGAAA
 
. : . : . : . : . : . :
JMFS060F05+ ATGAAGTAAAAGGGTCACCGTTAACCAGAGGCAAATCAACCCAATCACACCGCAGGATTT
JMFS097E11+ ATGAAGTAAAAGGGTCACCGTTAACCAGAGGCAAATCAACCCAATCACACCGCAGGATTT
JMFS129H04+ ATGAAGTAAAAGGGTCACCGTTAACCAGAGGCAAATCAACCCAATCACACCGCAGGATTT
                      ____________________________________________________________
consensus ATGAAGTAAAAGGGTCACCGTTAACCAGAGGCAAATCAACCCAATCACACCGCAGGATTT
 
. : . : . : . : . : . :
JMFS060F05+ CCTTTTTAAAGAGCGCGAATCATGGCTTTTACCACAAAACCTAAAGCCCAAACCTAAATA
JMFS097E11+ CCTTTTTAAAGAGCGCGAATCATGGCTTTTACCACAAAACCTAAAGCCCAAACCTAAATA
JMFS129H04+ CCTTTTTAAAGAGCGCGAATCATGGCTTTTACCACAAAACCTAAAGCCCAAACCTAAATA
                      ____________________________________________________________
consensus CCTTTTTAAAGAGCGCGAATCATGGCTTTTACCACAAAACCTAAAGCCCAAACCTAAATA
 
. : . : . : . : . : . :
JMFS060F05+ AAGCCACTTCTCTAATTACTGTGATGTGACTAACTAAAGATTAACAAACAGTTAAATACT
JMFS097E11+ AAGCCACTTCTCTAATTACTGTGATGTGACTAACTAAAGATTAACAAACAGTTAAATACT
JMFS129H04+ AAGCCACTTCTCTAATTACTGTGATGTGACTAACTAAAGATTAACAAACAGTTAAATACT
                      ____________________________________________________________
consensus AAGCCACTTCTCTAATTACTGTGATGTGACTAACTAAAGATTAACAAACAGTTAAATACT
 
. : . : . : . : . : . :
JMFS060F05+ TAAATCCAATGGTAAAATGGC
JMFS097E11+ TAAATCCAATGGTAAAATGGCAAGAACATTCAAAGA
JMFS129H04+ TAAATCCAATGGTAAAATGGCAAGAACATTCAAAGACCGCCGGACTATAGATTCTACGAA
                      ____________________________________________________________
consensus TAAATCCAATGGTAAAATGGCAAGAACATTCAAAGACCGCCGGACTATAGATTCTACGAA
 
. : . : . : . : . : . :
JMFS129H04+ AAACTCAGATATCTATGCTATTAGGTGGCAGTGGTGACAACAAAGTTTTCACTGAGATGG
                      ____________________________________________________________
consensus AAACTCAGATATCTATGCTATTAGGTGGCAGTGGTGACAACAAAGTTTTCACTGAGATGG
 
. : . : . : . : . : . :
JMFS129H04+ AAATGGTAGCAATCGGAGTAAATGCGCCCCATTGATTGAGCTGCCGATATGGGAAAGTTT
                      ____________________________________________________________
consensus AAATGGTAGCAATCGGAGTAAATGCGCCCCATTGATTGAGCTGCCGATATGGGAAAGTTT