| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF034O19 | Sequence | 538 | 009058 (5) | ref|XP_004243929.1| | 4e-26 | PREDICTED: pentatricopeptide repeat-containing protein At1g71210 [Solanum lycop | 695 | 008271 (3) | ref|XP_009591912.1| | 2e-41 | PREDICTED: pentatricopeptide repeat-containing protein At1g71210 [Nicotiana tom |
| JMFS080G06 | Sequence | 615 | 009058 (5) | ref|XP_004243929.1| | 1e-41 | PREDICTED: pentatricopeptide repeat-containing protein At1g71210 [Solanum lycop | |||||
| JMSF005B11 | Sequence | 217 | 009058 (5) | ||||||||
| JMSF045J19 | Sequence | 696 | 009058 (5) | ref|XP_004243929.1| | 7e-56 | PREDICTED: pentatricopeptide repeat-containing protein At1g71210 [Solanum lycop | 730 | 008271 (3) | ref|XP_006342394.1| | 7e-47 | PREDICTED: pentatricopeptide repeat-containing protein At1g71210-like isoform X |
| JMSF046J19 | Sequence | 220 | 009058 (5) | 663 | 008271 (3) | ref|XP_009591912.1| | 1e-23 | PREDICTED: pentatricopeptide repeat-containing protein At1g71210 [Nicotiana tom | |||
This contig is upended
. : . : . : . : . : . :
JMSF045J19+ TCCAAGAACTCAATCATCAAGGTAGTGAGCTTGGCTTTCGA
____________________________________________________________
consensus TCCAAGAACTCAATCATCAAGGTAGTGAGCTTGGCTTTCGA
. : . : . : . : . : . :
JMSF045J19+ GAGAATCTTGAAAATTGCAGAAAATGTGGCCTGGGTATGGTAGAACCCGGGTTGACGACC
JMFS080G06+ AACCCGGGTTGACGACC
____________________________________________________________
consensus GAGAATCTTGAAAATTGCAGAAAATGTGGCCTGGGTATGGTAGAACCCGGGTTGACGACC
. : . : . : . : . : . :
JMSF045J19+ CGCCCAATCGAAGAACTTCAAGCAAGACAGCACATCTTTACCCTTCTCATAGTTCAAAAT
JMFF034O19+ TTCTCATAGTTCAAAAT
JMFS080G06+ CGCCCAATCGAAGAACTTCAAGCAAGACAGCACATCTTTACCCTTCTCATAGTTCAAAAT
____________________________________________________________
consensus CGCCCAATCGAAGAACTTCAAGCAAGACAGCACATCTTTACCCTTCTCATAGTTCAAAAT
. : . : . : . : . : . :
JMSF045J19+ CTCTAGAACTAATGATTCGGAGAGACGGAGATTGAACCGGGACAAAGCTAAATCCGCTGA
JMFF034O19+ CTCTAGAACTAATGATTCGGAGAGACGGAGATTGAACCGGGACAAAGCTAAATCCGCTGA
JMFS080G06+ CTCTAGAACTAATGATTCGGAGAGACGGAGATTGAACCGGGACAAAGCTAAATCCGCTGA
____________________________________________________________
consensus CTCTAGAACTAATGATTCGGAGAGACGGAGATTGAACCGGGACAAAGCTAAATCCGCTGA
. : . : . : . : . : . :
JMSF045J19+ TGCCTCGTCTTTGGTTCGTAAGATTTCGAAGATTCGATCGAAATCCGGGTTTAACCTACT
JMFF034O19+ TGCCTCGTCTTTGGTTCGTAAGATTTCGAAGATTCGATCGAAATCCGGGCTTAACCTACT
JMFS080G06+ TGCCTCGTCTTTGGTTCGTAAGATTTCGAAGATTCGATCGAAATCCGGGTTTAACCTACT
____________________________________________________________
consensus TGCCTCGTCTTTGGTTCGTAAGATTTCGAAGATTCGATCGAAATCCGGGTTTAACCTACT
. : . : . : . : . : . :
JMSF045J19+ CTGGAACCACTCTTTAAACGACAAAACCACATCCTTGAGCTGGAAAACGCCGGCATTTGA
JMFF034O19+ CTGGAACCACTCTTTAAACGACAAAACCACATCCTTGAGCTGGAAAACGCCGGCATTTGA
JMFS080G06+ CTGGAACCACTCTTTAAACGACAAAACCACATCCTTGAGCTGGAAAACGCCGGCATTTGA
____________________________________________________________
consensus CTGGAACCACTCTTTAAACGACAAAACCACATCCTTGAGCTGGAAAACGCCGGCATTTGA
. : . : . : . : . : . :
JMSF045J19+ AGTGTGAATAGAGCTGGAACATGAGGCTGATGAATGAAAGCACTCCTGTGAAGAAAACTG
JMFF034O19+ AGTGTGAATAGAGCTGGAACATGAGGCTGATGAATGAAAGCACTCCTGTGAAGAAAACTG
JMFS080G06+ AGTGTGAATAGAGCTGGAACATGAGGCTGATGAATGAAAGCACTCCTGTGAAGAAAACTG
____________________________________________________________
consensus AGTGTGAATAGAGCTGGAACATGAGGCTGATGAATGAAAGCACTCCTGTGAAGAAAACTG
. : . : . : . : . : . :
JMSF045J19+ GTACGGGTGGGAGGTTAGGATAGACTCGGCGGCGGCTCTGGTGGAGTATAAGAGAAAGAA
JMFF034O19+ GTACGGGTGGGAGGTTAGGATAGACTCGGCGGCGGCTCTGGTGGAGTATAAGAGAAAGAA
JMFS080G06+ GTACGGGTGGGAGGTTAGGATAGACTCGGCGGCGGCTCTGGTGGAGTATAAGAGAAAGAA
____________________________________________________________
consensus GTACGGGTGGGAGGTTAGGATAGACTCGGCGGCGGCTCTGGTGGAGTATAAGAGAAAGAA
. : . : . : . : . : . :
JMSF045J19+ GAAAACTTTATTGCTATTGCTTTTGGTGGACGGTGGAGAGATCAAGCTTCTGGCATTTTG
JMFF034O19+ GAAAACTTTATTGCTATTGCTTTTGGTGGACGGTGGAGAGATCAAGCTTCTGGCATTTTG
JMSF005B11+ CTTTATTGCTATTGCTTTTGGTGGACGGTGGAGAGATCAAGCTTCTGGCATTTTG
JMSF046J19+ TGCTTTTGGTGGACGGTGGAGAGATCAAGCTTCTGGCATTTCG
JMFS080G06+ GAAAACTTTATTGCTATTGCTTTTGGTGGACGGTGGAGAGATCAAGCTTCTGGCATTTTG
____________________________________________________________
consensus GAAAACTTTATTGCTATTGCTTTTGGTGGACGGTGGAGAGATCAAGCTTCTGGCATTTTG
. : . : . : . : . : . :
JMSF045J19+ TCGCCCCGACCTAATCATTAGCAGCATAATTGAGGTGTTCTACAAGGGCTTGCGAACACT
JMFF034O19+ TCGCCCCGACCTAATCATTAGCAGCATAATTGAGGTGTTCTACAAGGGCTTGCGAACACT
JMSF005B11+ TCGCCCCGACCTAATCATTAGCAGCATAATTGAGGTGTTCTACAAGGGCTTGCGAACACT
JMSF046J19+ TCGCCCCGACCTAATCATTAGCAGCATAATTGAGGTGTTNTNCAAGGGCTTGCGAACACT
JMFS080G06+ TCGCCCCGACCTAATCATTAGCAGCATAATTGAGGTGTTCTACAAGGGCTTGCGAACACT
____________________________________________________________
consensus TCGCCCCGACCTAATCATTAGCAGCATAATTGAGGTGTTCTACAAGGGCTTGCGAACACT
. : . : . : . : . : . :
JMSF045J19+ GTAAAGATTATAGCCTAGCCGTGAATCGATAGGTCACGGCGGCGCTGGGGAATCTCGGCG
JMFF034O19+ GTAAAGATTATAGCCTAGCCGTGAATCGATAGGTCACGGCGGCGCTGGGGAATCTCGGCG
JMSF005B11+ GTAAAGATTATAGCCTAGCCGTGAATCGATAGGTCACGGCGGCGCTGGGGAATCTCGGCG
JMSF046J19+ GTAAAGATTATAGCCTAGCCGTGAATCGATAGGTCNCGGCGGCGCTGGGGAATCTCGGCG
JMFS080G06+ GTAAAGATTATAGCCTAGCCGTGAATCGATAGGTCACGGCGGCGCTGGGGAATCTCGGCG
____________________________________________________________
consensus GTAAAGATTATAGCCTAGCCGTGAATCGATAGGTCACGGCGGCGCTGGGGAATCTCGGCG
. : . : . : . : . : . :
JMSF045J19+ GCGGCCAAAGTCGAA-GCGGCTTCCAGACTTCAGA-GATAGTCGAACATGACGGTC
JMFF034O19+ GCGGCCAAAGTCGAA-GCGGCTTCCAGACTTCAGA-GAAAGTC
JMSF005B11+ GCGGCCAAAGTCGAA-GCGGCTTCCAGACTTCAGA-GATAGTC
JMSF046J19+ GCGGCCAAAGTCGAATGCGGCTTCCAGACTTCAGATGATAGTCGAACATGACGGTC
JMFS080G06+ GCGGCCAAAGTCGAA-GCGGCTTCCAGACTTCAGA-GATAGTCGAACATGACGGTCAGAA
____________________________________________________________
consensus GCGGCCAAAGTCGAA-GCGGCTTCCAGACTTCAGA-GATAGTCGAACATGACGGTCAGAA