clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFS049B11 | Sequence | 623 | 009038 (6) | ref|XP_009629755.1| | 6e-65 | PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Nicotia | |||||
JMFS056A03 | Sequence | 627 | 009038 (6) | ref|XP_009758840.1| | 2e-07 | PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Nicotia | |||||
JMFS099A03 | Sequence | 613 | 009038 (6) | gb|KJB14950.1| | 1e-55 | hypothetical protein B456_002G150300 [Gossypium raimondii] gb|KJB14951.1| hypoth | |||||
JMFS104G05 | Sequence | 597 | 009038 (6) | ref|XP_009629755.1| | 2e-61 | PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Nicotia | |||||
JMFS106E07 | Sequence | 637 | 009038 (6) | gb|AFB18634.1| | 1e-55 | CESA5 [Gossypium hirsutum] | |||||
JMSF030N03 | Sequence | 627 | 009038 (6) | ref|XP_009758840.1| | 1e-38 | PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Nicotia | 703 | 019353 | gb|ACS88358.1| | 1e-106 | cellulose synthase catalytic subunit [Gossypium hirsutum] |
This contig is upended
. : . : . : . : . : . :
JMFS049B11+ CATAGGTCAAAAGAGGGATTTCTAACNCAGGGCTAGATGCTTCGTTTCC
JMFS104G05+ CTAGATGCTTCGTTTCC
____________________________________________________________
consensus CATAGGTCAAAAGAGGGATTTCTAACNCAGGGCTAGATGCTTCGTTTCC
. : . : . : . : . : . :
JMFS049B11+ AGATGAACTAGCATGACCGCCATGGCAATGGGAAGAAGGAACTGTCCCAGCACCGCCCAA
JMFS104G05+ AGATGAACTAGCATGACCGCCATGGCAATGGGAAGAAGGAACTGTCCCAGCACCGCCCAA
____________________________________________________________
consensus AGATGAACTAGCATGACCGCCATGGCAATGGGAAGAAGGAACTGTCCCAGCACCGCCCAA
. : . : . : . : . : . :
JMFS049B11+ AGCTTCAACATCACAGTCAAACTCATGCTCTAAGTCATCAATGCCATCTTCTTCCTCATC
JMFS104G05+ AGCTTCAACATCACAGTCAAACTCATGCTCTAAGTCATCAATGCCATCTTCTTCCTCATC
____________________________________________________________
consensus AGCTTCAACATCACAGTCAAACTCATGCTCTAAGTCATCAATGCCATCTTCTTCCTCATC
. : . : . : . : . : . :
JMFS049B11+ CCCGTCAACCCGAGCACTACCTTTGAGACGCTTGTACCTAGTTTTGCACTGAGGGCAGGC
JMFS104G05+ CCCGTCAACCCGAGCACTACCTTTGAGACGCTTGTACCTAGTTTTGCACTGAGGGCAGGC
JMFS099A03+ CTAGTTTTACACTGGGGGCAGGC
JMFS106E07+ CAACACGAGGACTACCTTTAATGCGCTTATATCTAGTTTTACACTGGGGGCAGGC
____________________________________________________________
consensus CCCGTCAACCCGAGCACTACCTTTGAGACGCTTGTACCTAGTTTTGCACTGGGGGCAGGC
. : . : . : . : . : . :
JMFS049B11+ CTGGTTTCCCTCTCTTCTCTCATACTCGTAGCAAGGCCGGCATACAGGGAAAGCACATTC
JMFS104G05+ CTGGTTTCCCTCTCTTCTCTCATACTCGTAGCAAGGCCGGCATACAGGGAAAGCACATTC
JMFS099A03+ CTGACTTCCCTCTCTTCTTTCATACTCATAGCAAGGTCTGCAAACAGGGAAGGCACATTC
JMFS106E07+ CTGACTTCCCTCTCTTCTTTCATACTCATAGCAAGGTCTGCAAACAGGGAAGGCACATTC
JMSF030N03+ TACTCATAGCAAGGTCTGCAAACAGGGAAGGCACATTC
____________________________________________________________
consensus CTGGTTTCCCTCTCTTCTTTCATACTCATAGCAAGGTCTGCAAACAGGGAAGGCACATTC
. : . : . : . : . : . :
JMFS049B11+ GTTGCAAGCAACAAAGACTTCTCCCTCTGCTGTGATCTCTATCTCATCCCCGCAAATCTG
JMFS104G05+ GTTGCAAGCAACAAAGACTTCTCCCTCTGCTGTGATCTCTATCTCATCCCCGCAAATCTG
JMFS099A03+ ATTGCATGCGACAAAGAGCTCTCCATCTACAGTAATTTCAATTTCATCCCCGCAAATCTG
JMFS106E07+ ATTGCATGCGACAAAGAGCTCTCCATCTACAGTAATTTCAATTTCATCCCCGCAAATCTG
JMSF030N03+ ATTGCATGCGACAAAGAGCTCTCCATCTACAGTAATTTCAATTTCATCCCCGCAAATCTG
____________________________________________________________
consensus ATTGCATGCGACAAAGAGCTCTCCATCTACAGTAATTTCAATTTCATCCCCGCAAATCTG
. : . : . : . : . : . :
JMFS049B11+ GCATATTTGGCCACTTAATTCCCGCACTGATTTTATTTTACCGATTTCATCGGCATTGAT
JMFS104G05+ GCATATTTGGCCACTTAATTCCCGCACTGATTTTATTTTACCGATTTCATCGGCATTGAT
JMFS099A03+ GCATATTTGGCCACTTAATTCTCGCACCGACTTTATTCTTCCAATTTCATCGGCATTAAT
JMFS106E07+ GCATATTTGGCCACTTAATTCTCGCACCGACTTTATTCTTCCAATTTCATCGGCATTAAT
JMSF030N03+ ACATATTTGGCCACTTAATTCTCGCACCGACTTTATTCTTCCAATTTCATCGGCATTAAT
JMFS056A03+ TATTCTTCCAATTTCATCGGCATTAAT
____________________________________________________________
consensus GCATATTTGGCCACTTAATTCTCGCACCGACTTTATTCTTCCAATTTCATCGGCATTAAT
. : . : . : . : . : . :
JMFS049B11+ GAGCACAAACTCATTCCTATTGTGAGAACCAGCAATAAGTCTTCCTCCAGTATTCAT
JMFS104G05+ GAGCACAAACTCATTCCTATTGTGAGAACCAGCAATAAGTCTTCCTCCAGTATTCAT
JMFS099A03+ GAGCACAAACTCATTCCTATTGTGAGAACCAGCAATAAGTCTCCCTGCTGTATTCATCTC
JMFS106E07+ GAGCACAAACTCATTCCTATTGTGAGAACCAGCAATAAGTCTCCCTGCTGTATTCATCTC
JMSF030N03+ GAGCACAAACTCATTCCTATTGTGAGAACCAGCAATAAGTCTCCCTGCTGTATTCATCTC
JMFS056A03+ GAGCACAAACTCATTCCTATTGTGAGAACCAGCAATAAGTCTCCCTGCTGTATTCATCTC
____________________________________________________________
consensus GAGCACAAACTCATTCCTATTGTGAGAACCAGCAATAAGTCTCCCTGCTGTATTCATCTC
. : . : . : . : . : . :
JMFS099A03+ TCCCACACCAAAGCTGGGAAACCAGTATATCCGACCGAAATCAGGCCTCAAAGGGGATTC
JMFS106E07+ TCCCACACCAAAGCTGGGAAACCAGTATATCCGACCGAAATCAGGCCTCAAAGGGGATTC
JMSF030N03+ TCCCACACCAAAGCTGGGAAACCAGTATATCCGACCGAAATCAGGCCTCAAAGGGGATTC
JMFS056A03+ TCCCACACCAAAGCTGGGAAACCAGTATATCCGACCGAAATCAGGCCTCAAAGGGGATTC
____________________________________________________________
consensus TCCCACACCAAAGCTGGGAAACCAGTATATCCGACCGAAATCAGGCCTCAAAGGGGATTC
. : . : . : . : . : . :
JMFS099A03+ AGCCGCCTTTCCGCGCCAAGAATCAATAAAACCCTCTAAAATGAGACGCCTTTAGCACTA
JMFS106E07+ AGCCGCCTTTCCGCGCCAAGAATCAATAAAACCCTCTAAAATGAGACGCCTTTAGCACTA
JMSF030N03+ AGCCGCCTTTCCGCGCCAAGAATCAATAAAACCCTCTAAAATGAGACGCCTTTAGCACTA
JMFS056A03+ AGCCGCCTTTCCGCGCCAAGAATCAATAAAACCCTCTAAAATGAGACGCCTTTAGCACTA
____________________________________________________________
consensus AGCCGCCTTTCCGCGCCAAGAATCAATAAAACCCTCTAAAATGAGACGCCTTTAGCACTA
. : . : . : . : . : . :
JMFS099A03+ AAAACTGAATCTTGGGGTTAAGCACACAGCGTAACCTCCCAACCCCCAACAACATTCGCA
JMFS106E07+ AAAACTGAATCTTGGGGTTAAGCACACAGCGTAACCTCCCAACCCCCAACAACATTCGCA
JMSF030N03+ AAAACTGAATCTTGGGGTTAAGCACACAGCGTAACCTCCCAACCCCCAACAACATTCGCA
JMFS056A03+ AAAACTGAATCTTGGGGTTAAGCACACAGCGTAACCTCCCAACCCCCAACAACATTCGCA
____________________________________________________________
consensus AAAACTGAATCTTGGGGTTAAGCACACAGCGTAACCTCCCAACCCCCAACAACATTCGCA
. : . : . : . : . : . :
JMFS099A03+ AAAAAAAACACACCAAGAAAAGAAATGAAGGAAAACCCAATACAACAAAATACCTAAATA
JMFS106E07+ AAAAAAAACACACCAAGAAAAGAAATGAAGGAAAACCCAATACAACAAAATACCTAAATA
JMSF030N03+ AAAAAAAACACACCAAGAAAAGAAATGAAGGAAAACCCAATACAACAAAATACCTAAATA
JMFS056A03+ AAAAAAAACACACCAAGAAAAGAAATGAAGGAAAACCCAATACAACAAAATACCTAAATA
____________________________________________________________
consensus AAAAAAAACACACCAAGAAAAGAAATGAAGGAAAACCCAATACAACAAAATACCTAAATA
. : . : . : . : . : . :
JMFS099A03+ TGAAGAAGAAGAAGAAGAAGAAGAAAGAAATTAATTGCCCCCAGACAGGCGCAGAGCGAT
JMFS106E07+ TGAAGAAGAAGAAGAAGAAGAAGAAAGAAATTAATTGCCCCCAGACAGGCGCAGAGCGAT
JMSF030N03+ TGAAGAAGAAGAAGAAGAAGAAGAAAGAAATTAATTGCCCCCAGACAGGCGCAGAGCGAT
JMFS056A03+ TGAAGAAGAAGAAGAAGAAGAAGAAAGAAATTAATTGCCCCCAGACAGGCGCAGAGCGAT
____________________________________________________________
consensus TGAAGAAGAAGAAGAAGAAGAAGAAAGAAATTAATTGCCCCCAGACAGGCGCAGAGCGAT
. : . : . : . : . : . :
JMFS099A03+ AATAGTAAAATTGAAGGAA
JMFS106E07+ AATAGTAAAATTGAAGGAATTCCCAAAAG
JMSF030N03+ AATAGTAAAATTGAAGGAATTCCCAAAAGCAGAGAGTGGTGAGGTGAGAGATGCATAAAC
JMFS056A03+ AATAGTAAAATTGAAGGAATTCCCAAAAGCAGAGAGTGGTGAGGTGAGAGATGCATAAAC
____________________________________________________________
consensus AATAGTAAAATTGAAGGAATTCCCAAAAGCAGAGAGTGGTGAGGTGAGAGATGCATAAAC
. : . : . : . : . : . :
JMSF030N03+ AGTTTATACATTCATTCTTACAAGCTAAGAATGCACTGTAATCCAGC
JMFS056A03+ AGTTTATACATTCATTCTTACAAGCTAAGAATGCACTGTAATCCAGCTGGAATAGGAGCC
____________________________________________________________
consensus AGTTTATACATTCATTCTTACAAGCTAAGAATGCACTGTAATCCAGCTGGAATAGGAGCC
. : . : . : . : . : . :
JMFS056A03+ CGACCAGCCAGGGTTCTAAAAATGGAGAGAGTGGGAAATCAATGTGAAATTGATAAAAAT
____________________________________________________________
consensus CGACCAGCCAGGGTTCTAAAAATGGAGAGAGTGGGAAATCAATGTGAAATTGATAAAAAT
. : . : . : . : . : . :
JMFS056A03+ GAAAATGAAAATATGGACGCGTACGAGAGAAGCACAAAGCAAGAAAAGGGATGAGGTGCC
____________________________________________________________
consensus GAAAATGAAAATATGGACGCGTACGAGAGAAGCACAAAGCAAGAAAAGGGATGAGGTGCC