Contig 009024:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS036A11Sequence447009024 (3)
JMFS046H12Sequence622009024 (3)ref|XP_004247135.1|8e-12PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Solanum lycopersicum]
JMFS132C06Sequence622009024 (3)ref|XP_004247135.1|2e-26PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Solanum lycopersicum]

Alignment

This contig is upended


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JMFS132C06+                                         ATAAGAGCAGTCCATGCACCANAGTCTAGA
                      ____________________________________________________________
consensus                                           ATAAGAGCAGTCCATGCACCANAGTCTAGA
 
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JMFS132C06+           GAATTTGTTCTCACTATGCTCCATAGTCGTTCTTCTTCAGCAGATAAAGCAGATCCATCC
JMFS046H12+                                                 AGCAGATAAAGCAGATCCATCC
                      ____________________________________________________________
consensus             GAATTTGTTCTCACTATGCTCCATAGTCGTTCTTCTTCAGCAGATAAAGCAGATCCATCC
 
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JMFS132C06+           ACTGGCTGGTGCATTGCGGCAGAATCATGAATATTGTCTGATGGAATTCCATTTTCTGTA
JMFS046H12+           ACTGGCTGGTGCATTGCGGCAGAATCATGAATATTGTCTGATGGAATTCCATTTTCTGTA
                      ____________________________________________________________
consensus             ACTGGCTGGTGCATTGCGGCAGAATCATGAATATTGTCTGATGGAATTCCATTTTCTGTA
 
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JMFS132C06+           ATACCAGTGGATGCTACATCTCTTGCTTCATTATTAGTGCCATTTATAGAAGTGGCATAT
JMFS046H12+           ATACCAGTGGATGCTACATCTCTTGCTTCATTATTAGTGCCATTTATAGAAGTGGCATAT
                      ____________________________________________________________
consensus             ATACCAGTGGATGCTACATCTCTTGCTTCATTATTAGTGCCATTTATAGAAGTGGCATAT
 
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JMFS132C06+           GATGCAACTTGAGATGCATCCAAATGTCCACCAACATTTTCATTGGTATCATAGGTCACA
JMFS036A11+             TGCAACTTGAGATGCATCCAAATGTCCACCAACATTTTCATTGGTATCATAGGTCACA
JMFS046H12+           GATGCAACTTGAGATGCATCCAAATGTCCACCAACATTTTCATTGGTATCATAGGTCACA
                      ____________________________________________________________
consensus             GATGCAACTTGAGATGCATCCAAATGTCCACCAACATTTTCATTGGTATCATAGGTCACA
 
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JMFS132C06+           ACCGTAGGGGTATCCTGCTGAGCCAAATCTGTAATGCTATCTGCAGCAACAGTAGAACTG
JMFS036A11+           ACCGTAGGGGTATCCTGCTGAGCCAAATCTGTAATGCTATCTGCAGCAACAGTAGAACTG
JMFS046H12+           ACCGTAGGGGTATCCTGCTGAGCCAAATCTGTAATGCTATCTGCAGCAACAGTAGAACTG
                      ____________________________________________________________
consensus             ACCGTAGGGGTATCCTGCTGAGCCAAATCTGTAATGCTATCTGCAGCAACAGTAGAACTG
 
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JMFS132C06+           CGAGTTGAGTCCATAATGGAGGTGGATGTAACAGGATCTCCAATACCAGTATGAGTCCCT
JMFS036A11+           CGAGTTGAGTCCATAATGGAGGTGGATGTAACAGGATCTCCAATACCAGTATGAGTCCCT
JMFS046H12+           CGAGTTGAGTCCATAATGGAGGTGGATGTAACAGGATCTCCAATACCAGTATGAGTCCCT
                      ____________________________________________________________
consensus             CGAGTTGAGTCCATAATGGAGGTGGATGTAACAGGATCTCCAATACCAGTATGAGTCCCT
 
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JMFS132C06+           AAATGTTCAGTAGATATAGAGGTATCAGGAGCCACAGGATTGCCAGTGTTCTCCAAATCA
JMFS036A11+           AAATGTTCAGTAGATATAGAGGTATCAGGAGCCACAGGATTGCCAGTGTTCTCCAAATCA
JMFS046H12+           AAATGTTCAGTAGATATAGAGGTATCAGGAGCCACAGGATTGCCAGTGTTCTCCAAATCA
                      ____________________________________________________________
consensus             AAATGTTCAGTAGATATAGAGGTATCAGGAGCCACAGGATTGCCAGTGTTCTCCAAATCA
 
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JMFS132C06+           GACGCATTTGAACCTGCATTATTATGATCAGCTGATACATAGTCCATCACAGCAGATGAT
JMFS036A11+           GACGCATTTGAACCTGCATTATTATGATCAGCTGATACATAGTCCATCACAGCAGATGAT
JMFS046H12+           GACGCATTTGAACCTGCATTATTATGATCAGCTGATACATAGTCCATCACAGCAGATGAT
                      ____________________________________________________________
consensus             GACGCATTTGAACCTGCATTATTATGATCAGCTGATACATAGTCCATCACAGCAGATGAT
 
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JMFS132C06+           TGAGTCACCACAGTGCCATGGTCAGCCATTGCTAAGAGAAGACCTGGAACCGAGAGATAC
JMFS036A11+           TGAGTCACCACAGTGCCATGGTCAGCCATTGCTAAGAGAAGACCTGGAACCGAGAGATAC
JMFS046H12+           TGAGTCACCACAGTGCCATGGTCAGCCATTGCTAAGAGAAGACCTGGAACCGAGAGATAC
                      ____________________________________________________________
consensus             TGAGTCACCACAGTGCCATGGTCAGCCATTGCTAAGAGAAGACCTGGAACCGAGAGATAC
 
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JMFS132C06+           GGCGGCGACGAGCGGTTGAAGGAGAGCTTCCGGCAGTGTGTAGCGGATGCAG        
JMFS036A11+           GGCGGCGACGAGCGGTTGAAGGAGAGCTTCCGGCAGTGTGTAGCGGATGCAGGAATGTGT
JMFS046H12+           GGCGGCGACGAGCGGTTGAAGGAGAGCTTCCGGCAGTGTGTAGCGGATGCAGGAATGTGT
                      ____________________________________________________________
consensus             GGCGGCGACGAGCGGTTGAAGGAGAGCTTCCGGCAGTGTGTAGCGGATGCAGGAATGTGT
 
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JMFS036A11+           ATTGGTTTGCCTTTTGAGGTTTATTGAGT                               
JMFS046H12+           ATTGGTTTGCCTTTTGAGGTTTATTGAGTTTCGAGGGTTTTCGATTTGTGGAGGATAGAT
                      ____________________________________________________________
consensus             ATTGGTTTGCCTTTTGAGGTTTATTGAGTTTCGAGGGTTTTCGATTTGTGGAGGATAGAT