Contig 008996:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009N04Sequence535008996 (6)ref|XP_009611595.1|3e-111PREDICTED: vesicle-associated membrane protein 711 [Nicotiana tomentosiformis]122015897ref|XP_002285207.1|5e-04PREDICTED: vesicle-associated membrane protein 711 [Vitis vinifera] emb|CBI21060
JMFF020D07Sequence531008996 (6)ref|XP_009611595.1|2e-110PREDICTED: vesicle-associated membrane protein 711 [Nicotiana tomentosiformis]720008996 (6)ref|XP_002324304.1|2e-82Vesicle-associated membrane protein 714 [Populus trichocarpa] gb|ABK93000.1| unk
JMFF028O03Sequence535008996 (6)ref|XP_009611595.1|3e-111PREDICTED: vesicle-associated membrane protein 711 [Nicotiana tomentosiformis]
JMFS017B01Sequence630008996 (6)ref|XP_009611595.1|1e-105PREDICTED: vesicle-associated membrane protein 711 [Nicotiana tomentosiformis]
JMSF046O17Sequence682008996 (6)ref|XP_009611595.1|2e-130PREDICTED: vesicle-associated membrane protein 711 [Nicotiana tomentosiformis]599017257ref|XP_009802045.1|6e-51PREDICTED: vesicle-associated membrane protein 711 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF020D07-                                  GATTAATAACACATTGCCTGTATAATAGCATTTTCA
                      ____________________________________________________________
consensus                                     GATTAATAACACATTGCCTGTATAATAGCATTTTCA
 
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rJMFF020D07-          GTTACTACAGATTTTTTTGAAACCCGAAATACATGCACAAAATACTTTTCTTTCTTCACA
                      ____________________________________________________________
consensus             GTTACTACAGATTTTTTTGAAACCCGAAATACATGCACAAAATACTTTTCTTTCTTCACA
 
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rJMFF020D07-          CCCCCCGTCCCCCACCCCTGGACACCTTGCAATAACAAGAATCATTAACTCCTTTTTTTC
                      ____________________________________________________________
consensus             CCCCCCGTCCCCCACCCCTGGACACCTTGCAATAACAAGAATCATTAACTCCTTTTTTTC
 
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rJMFF020D07-          TGAACACAAGAAGTTCAGCAGAAATTGATAAAATAAAATAAAAATTCACACATATGCAAA
                      ____________________________________________________________
consensus             TGAACACAAGAAGTTCAGCAGAAATTGATAAAATAAAATAAAAATTCACACATATGCAAA
 
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rJMFF020D07-          ACAATCAATAGAGCCAGGAATAGCTGTTGTGTACACTAGATGCTGATTCTCACTTCAGAC
                      ____________________________________________________________
consensus             ACAATCAATAGAGCCAGGAATAGCTGTTGTGTACACTAGATGCTGATTCTCACTTCAGAC
 
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rJMFF020D07-          AAGATGGGAGTGTGAGGCCATGACAGACGAAGGCCAAAACGACATAAACTATCACCAGGA
JMSF046O17+                            CCATGACAAATGAAGGCCAAAACCGCATAACCTATCACCAACA
                      ____________________________________________________________
consensus             AAGATGGGAGTGTGAGGCCATGACAGATGAAGGCCAAAACGGCATAACCTATCACCAGGA
 
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rJMFF020D07-          GAAGGACTATCAGCGCAATTATGAGCTTCACATTTCTCCACCATACACTGCCTCTAAATC
JMSF046O17+           GGACGACTATCACTGCAACTATAAGCTTCACGTTTCTCCACCATACAGTGCTTCTAAACT
                      ____________________________________________________________
consensus             GGAGGACTATCAGTGCAATTATGAGCTTCACGTTTCTCCACCATACAGTGCTTCTAAATT
 
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rJMFF020D07-          GTCGGGCCTGCTTCCTGAAGCGAAGGGTGTTCCCTTGCATAGTGGCAGTTTTATCAACAA
JMSF046O17+           GCCGAGCCTGCTTCCTGAAGCGAAAGGTATTTCCTTGCATATTTTCAGTTTTATCAACCA
JMFF009N04+                         CTGAAGCGAAGGGTGTTCCCTTGCATAGTGGCAGTTTTATCAACAA
JMFF020D07+                            AAGCGAAGGGTGTTCCCTTGCATAGTGGCAGTTTTATCAACAA
JMFF028O03+                         CTGAAGCGAAGGGTGTTCCCTTGCATAGTGGCAGTTTTATCAACAA
JMFS017B01+                                                CATAGTGGCAGTTTTATCAACAA
                      ____________________________________________________________
consensus             GTCGGGCCTGCTTCCTGAAGCGAAGGGTGTTCCCTTGCATAGTGGCAGTTTTATCAACAA
 
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rJMFF020D07-          GCAACTCCAAACGGTCTCCTCTGTCTAAAACTTTGTCAATATTCTCTATCATGACATTAC
JMSF046O17+           GCAACTCCAAACGATCCCCTCTCTCTAAAACTTTATCAATGTTCTCAATCATGACATCGC
JMFF009N04+           GCAACTCCAAACGGTCTCCTCTGTCTAAAACTTTGTCAATATTCTCTATCATGACATTAC
JMFF020D07+           GCAACTCCAAACGGTCTCCTCTGTCTAAAACTTTGTCAATATTCTCTATCATGACATTAC
JMFF028O03+           GCAACTCCAAACGGTCTCCTCTGTCTAAAACTTTGTCAATATTCTCTATCATGACATTAC
JMFS017B01+           GCAACTCCAAACGGTCTCCTCTGTCTAAAACTTGGTCAATATTCTCTATCATGACATTAC
                      ____________________________________________________________
consensus             GCAACTCCAAACGGTCTCCTCTGTCTAAAACTTTGTCAATATTCTCTATCATGACATTAC
 
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rJMFF020D07-          GCACCTGACTCATTTCACCTTTTAGCCTGTTTATTCTGTCTGCATTTGGATCATTCGAGT
JMSF046O17+           GCACCTGACTAATTTCACCTTTAATCCTGTTTATTCTGTCTGCATTTGGATCCTTTGAGT
JMFF009N04+           GCACCTGACTCATTTCACCTTTTAGCCTGTTTATTCTGTCTGCATTTGGATCATTCGAGT
JMFF020D07+           GCACCTGACTCATTTCACCTTTTAGCCTGTTTATTCTGTCTGCATTTGGATCATTCGAGT
JMFF028O03+           GCACCTGACTCATTTCACCTTTTAGCCTGTTTATTCTGTCTGCATTTGGATCATTCGAGT
JMFS017B01+           GCACCTGACTCATTTCACCTTTTAGCCTGTTTATTCTGTCTGCATTTGGATCATTCGAGT
                      ____________________________________________________________
consensus             GCACCTGACTCATTTCACCTTTTAGCCTGTTTATTCTGTCTGCATTTGGATCATTCGAGT
 
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rJMFF020D07-          AATATTCCATTTGTTGGCTGATGACTCTGGAGAATTCATCATTCATAGCATATGCTTGTG
JMSF046O17+           AGTATTCAATTTGTTGGCTGAGGACTCTTGAGAATTCATTATTCATGGCATAAGCTTGTG
JMFF009N04+           AATATTCCATTTGTTGGCTGATGACTCTGGAGAATTCATCATTCATAGCATATGCTTGTG
JMFF020D07+           AATATTCCATTTGTTGGCTGATGACTCTGGAGAATTCATCATTCATAGCATATGCTTGTG
JMFF028O03+           AATATTCCATTTGTTGGCTGATGACTCTGGAGAATTCATCATTCATAGCATATGCTTGTG
JMFS017B01+           AATATTCCATTTGTTGGCTGATGACTCTGGAGAATTCATCATTCATAGCATATGCTTGTG
                      ____________________________________________________________
consensus             AATATTCCATTTGTTGGCTGATGACTCTGGAGAATTCATCATTCATAGCATATGCTTGTG
 
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rJMFF020D07-          CTGAAAGTACAGCTCTGCCATATGTCCTCACAAATCTTTGATGAATGTCCTCAAGGAAAG
JMSF046O17+           CAGTGAGAACTGCTCTTCCATAGGTTTTAACAAATCTTTGATGAATGTCCTCAAGGAAAG
JMFF009N04+           CTGAAAGTACAGCTCTGCCATATGTCCTCACAAATCTTTGATGAATGTCCTCAAGGAAAG
JMFF020D07+           CTGAAAGTACAGCTCTGCCATATGTCCTCACAAATCTTTGATGAATGTCCTCAAGGAAAG
JMFF028O03+           CTGAAAGTACAGCTCTGCCATATGTCCTCACAAATCTTTGATGAATGTCCTCAAGGAAAG
JMFS017B01+           CTGAAAGTACAGCTCTGCCATATGTCCTCACAAATCTTTGATGAATGTCCTCAAGGAAAG
                      ____________________________________________________________
consensus             CTGAAAGTACAGCTCTGCCATATGTCCTCACAAATCTTTGATGAATGTCCTCAAGGAAAG
 
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rJMFF020D07-          CAAAGGGAATTCTTCTTCCGGCGA                                    
JMSF046O17+           CAAAGGGAATTCTCCTTCCGGCGACGTCGTCGGCCATACAGAGGACGGTGAGTCCATCGG
JMFF009N04+           CAAAGGGAATTCTTCTTCCGGCGACGTCGTCGGCCATACAGAGAACGGTGAGGCCATCGG
JMFF020D07+           CAAAGGGAATTCTTCTTCCGGCGACGTCGTCGGCCATACAGAGAACGGTGAGGCCATCGG
JMFF028O03+           CAAAGGGAATTCTTCTTCCGGCGACGTCGTCGGCCATACAGAGAACGGTGAGGCCATCGG
JMFS017B01+           CAAAGGGAATTCTTCTTCCGGCGACGTCGTCGGCCATACAGAGAACGGTGAGGCCATCGG
                      ____________________________________________________________
consensus             CAAAGGGAATTCTTCTTCCGGCGACGTCGTCGGCCATACAGAGAACGGTGAGGCCATCGG
 
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JMSF046O17+           TGCGTTTGACATGGAAAATGTAGCGATCCTGAGAGTA                       
JMFF009N04+           TGCGTTTGACGTGGAAAATATAGCGATCCTGAGAGTAGGAAACGTTGCTGTCGCTGTCGC
JMFF020D07+           TGCGTTTGACGTGGAAAATATAGCGATCCTGAGAGTAGGAAACGTTGCTGTCGCTGTCGC
JMFF028O03+           TGCGTTTGACGTGGAAAATATAGCGATCCTGAGAGTAGGAAACGTTGCTGTCGCTGTCGC
JMFS017B01+           TGCGTTTGACGTGGAAAATATAGCGATCCTGAGAGTAGGAAACGTTGCTGTCGCTGTCGC
                      ____________________________________________________________
consensus             TGCGTTTGACGTGGAAAATATAGCGATCCTGAGAGTAGGAAACGTTGCTGTCGCTGTCGC
 
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JMFF009N04+           TATGCGTCTTCTCCAGTATCTGCCTGGCGATTGCGCTGGCGTTGGTCGGCGTGGCGCTGT
JMFF020D07+           TATGCGTCTTCTCCAGTATCTGCCTGGCGATTGCGCTGGCGTTGGTCGGCGTGGCGCTGT
JMFF028O03+           TATGCGTCTTCTCCAGTATCTGCCTGGCGATTGCGCTGGCGTTGGTCGGCGTGGCGCTGT
JMFS017B01+           TATGCGTCTTCTCCAGTATCTGCCTGGCGATTGCGCTGGCGTTGGTCGGCGTGGCGCTGT
                      ____________________________________________________________
consensus             TATGCGTCTTCTCCAGTATCTGCCTGGCGATTGCGCTGGCGTTGGTCGGCGTGGCGCTGT
 
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JMFF009N04+           ACTCCGCCAGCACCACCGATCCCCGAGCCACCAACGCATACAGTATCGCCATATTTCCCT
JMFF020D07+           ACTCCGCCAGCACCACCGATCCCCGAGCCACCAACGCATACAGTATCGCCATATTTCCCT
JMFF028O03+           ACTCCGCCAGCACCACCGATCCCCGAGCCACCAACGCATACAGTATCGCCATATTTCCCT
JMFS017B01+           ACTCCGCCAGCACCACCGATCCCCGAGCCACCAACGCATACAGTATCGCCATATTTCCCT
                      ____________________________________________________________
consensus             ACTCCGCCAGCACCACCGATCCCCGAGCCACCAACGCATACAGTATCGCCATATTTCCCT
 
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JMFF009N04+           CTCAAAA                                                     
JMFF020D07+           CTCAAAA                                                     
JMFF028O03+           CTCAAAA                                                     
JMFS017B01+           CTCAAAATATATGATTAGATGCAGATATACATGATATATAGAGGTAGGGTTTGATTGTTT
                      ____________________________________________________________
consensus             CTCAAAATATATGATTAGATGCAGATATACATGATATATAGAGGTAGGGTTTGATTGTTT
 
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JMFS017B01+           GGCGGAATTTAATATGTATAGAGCAGTTTGAATTTTACAGAGAAAAAGGAGGTGTTAAAG
                      ____________________________________________________________
consensus             GGCGGAATTTAATATGTATAGAGCAGTTTGAATTTTACAGAGAAAAAGGAGGTGTTAAAG