Contig 008985:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS009E02Sequence601008985 (3)ref|XP_004243469.1|8e-37PREDICTED: glutamate receptor 3.7 isoform X1 [Solanum lycopersicum]
JMFS010D12Sequence599008985 (3)ref|XP_004243469.1|1e-38PREDICTED: glutamate receptor 3.7 isoform X1 [Solanum lycopersicum]
JMSF037E16Sequence656008985 (3)ref|XP_010267707.1|7e-56PREDICTED: glutamate receptor 3.7-like isoform X2 [Nelumbo nucifera]718015109ref|XP_009765707.1|1e-85PREDICTED: glutamate receptor 3.7 isoform X2 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF037E16+ CA
                      ____________________________________________________________
consensus CA
 
. : . : . : . : . : . :
JMSF037E16+ CCCATAAGAACAAATTATATCAGNTAAGGCAGTCATTTGGTAGGAATCACTCTGTGTCAT
                      ____________________________________________________________
consensus CCCATAAGAACAAATTATATCAGNTAAGGCAGTCATTTGGTAGGAATCACTCTGTGTCAT
 
. : . : . : . : . : . :
JMSF037E16+ CCGAACAAAATAAGGGAATTGGAAAGCAGAGAGAGTTGGATCACTTGCAGCAAATGAGAC
JMFS010D12+ GCAGCAAATGAGAC
JMFS009E02+ C
                      ____________________________________________________________
consensus CCGAACAAAATAAGGGAATTGGAAAGCAGAGAGAGTTGGATCACTTGCAGCAAATGAGAC
 
. : . : . : . : . : . :
JMSF037E16+ AAGAGGCACATGAAGATCATTAGCAATAAAAGATATCATATGAGCTATTGCTGAAGACTG
JMFS010D12+ AAGAGGCACATGAAGATCATTAGCAATAAAAGATATCATATGAGCTATTGCTGAAGACTG
JMFS009E02+ AAGAGGCACATGAAGATCATTAGCAATAAAGGATATCATATGAGCTATTGCTGAAGACTG
                      ____________________________________________________________
consensus AAGAGGCACATGAAGATCATTAGCAATAAAAGATATCATATGAGCTATTGCTGAAGACTG
 
. : . : . : . : . : . :
JMSF037E16+ TGGACCTATTATTGTCACCACTTCCTTCCCAATCAGCTGAAATGCTCCAATGGAAGCCAA
JMFS010D12+ TGGACCTATTATTGTCACCACTTCCTTCCCAATCAGCTGAAATGCTCCAATGGAAGCCAA
JMFS009E02+ TGGACCTATTATTGTCACCACTTCCTTCCCAATCAGCTGAAATGCTCCAATGGAAGCCAA
                      ____________________________________________________________
consensus TGGACCTATTATTGTCACCACTTCCTTCCCAATCAGCTGAAATGCTCCAATGGAAGCCAA
 
. : . : . : . : . : . :
JMSF037E16+ AAAGCCACTGCAATTGGAATCCACCGGAATCAAGTTGAGCTTAGTCCCTGGCAGAATACT
JMFS010D12+ AAAGCCACTGCAATTGGAATCCACCGGAATCAAGTTGAGCTTAGTCCCTGGCAGAATACT
JMFS009E02+ AAAGCCACTGCAATTGGAATCCACCGGAATCAAGTTGAGCTTAGTCCCTGGCAGAATACT
                      ____________________________________________________________
consensus AAAGCCACTGCAATTGGAATCCACCGGAATCAAGTTGAGCTTAGTCCCTGGCAGAATACT
 
. : . : . : . : . : . :
JMSF037E16+ GGGATCCCCGTTGATATCAGTGACTGCAATATCCATTGCAGCCTTTGCCGCCCTCCCAAT
JMFS010D12+ GGGATCCCCGTTGATATCAGTGACTGCAATATCCATTGCAGCCTTTGCCGCCCTCCCAAT
JMFS009E02+ GGGATCCCCGTTGATATCAGTGACTGCAATATCCATTGCAGCCTTTGCCGCCCTCCCAAT
                      ____________________________________________________________
consensus GGGATCCCCGTTGATATCAGTGACTGCAATATCCATTGCAGCCTTTGCCGCCCTCCCAAT
 
. : . : . : . : . : . :
JMSF037E16+ GATTGAATTGAAAGTGAACACAGACCCAACATTCACAACCGCAGGCTTTTCACACTCCAC
JMFS010D12+ GATTGAATTGAAAGTGAACACAGACCCAACATTCACAACCGCAGGCTTTTCACACTCCAC
JMFS009E02+ GATTGAATTGAAAGTGAACACAGACCCAACATTCACAACCGCAGGCTTTTCACACTCCAC
                      ____________________________________________________________
consensus GATTGAATTGAAAGTGAACACAGACCCAACATTCACAACCGCAGGCTTTTCACACTCCAC
 
. : . : . : . : . : . :
JMSF037E16+ AATTCCTATACTCGACACCAAACTCAGAGCTAGTGCCACCACCCCAAGAAGCCTCATTCT
JMFS010D12+ AATTCCTATACTCGACACCAAACTCAGAGCTAGTGCCACCACCCCAAGAAGCCTCATTCT
JMFS009E02+ AATTCCTATACTCGACACCAAACTCAGAGCTAGTGCCACCACCCCAAGAAGCCTCATTCT
                      ____________________________________________________________
consensus AATTCCTATACTCGACACCAAACTCAGAGCTAGTGCCACCACCCCAAGAAGCCTCATTCT
 
. : . : . : . : . : . :
JMSF037E16+ TGGAGCCTCAAAAAGGCAAAAACAACAAGAACTGGGATACGATGTTCTGCTCAAGAAACT
JMFS010D12+ TGGAGCCTCAAAAAGGCAAAAACAACAAGAACTGGGATACGATGTTCTGCTCAAGAAACT
JMFS009E02+ TGGAGCCTCAAAAAGGCAAAAACAACAAGAACTGGGATACGATGTTCTGCTCAAGAAACT
                      ____________________________________________________________
consensus TGGAGCCTCAAAAAGGCAAAAACAACAAGAACTGGGATACGATGTTCTGCTCAAGAAACT
 
. : . : . : . : . : . :
JMSF037E16+ ATATATGGTTGTGGAATTTGAACGAAGTAGCATGGAAAGTTTCACGTGTGAAACGGTGCG
JMFS010D12+ ATATATGGTTGTGGAATTTGAACGAAGTAGCATGGAAAGTTTCACGTGTGAAACGGTGCG
JMFS009E02+ ATATATGGTTGTGGAATTTGAACGAAGTAGCATGGAAAGTTTCACGTGTGAAACGGTGCG
                      ____________________________________________________________
consensus ATATATGGTTGTGGAATTTGAACGAAGTAGCATGGAAAGTTTCACGTGTGAAACGGTGCG
 
. : . : . : . : . : . :
JMSF037E16+ AGAAACTACGCAGCCACCCACTTGATACACAAGTCTGAAATTGAGAAAAACA
JMFS010D12+ AGAAACTACGCAGCCACCCACTTGATACACAAGTCTGAAATTGAGAAAAACATGGCGTCT
JMFS009E02+ AGAAACTACGCAGCCACCCACTTGATACACAAGTCTGAAATTGAGAAAAACATGGCGTCT
                      ____________________________________________________________
consensus AGAAACTACGCAGCCACCCACTTGATACACAAGTCTGAAATTGAGAAAAACATGGCGTCT
 
. : . : . : . : . : . :
JMFS010D12+ GACCACAGTCAAGCAGCCCTATACTGTGGACTGGAGTCTGTAGTA
JMFS009E02+ GACCACAGTCAAGCAGCCCTATACTGTGGACTGGAGTCTGTAGTAGTAGCCTGTGAGAGA
                      ____________________________________________________________
consensus GACCACAGTCAAGCAGCCCTATACTGTGGACTGGAGTCTGTAGTAGTAGCCTGTGAGAGA