Contig 008967:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN040E12Sequence614008967 (3)ref|XP_007039480.1|8e-16PLATZ transcription factor family protein isoform 2 [Theobroma cacao] gb|EOY239
JMSF043G09Sequence825008967 (3)ref|XP_009795307.1|384PREDICTED: uncharacterized protein LOC104242030 [Nicotiana sylvestris]203008967 (3)

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF043G09- GATACTCCCCAAAATCGCAATTTCAAAACCTTTTCTCTTCTCCCTCC
                      ____________________________________________________________
consensus GATACTCCCCAAAATCGCAATTTCAAAACCTTTTCTCTTCTCCCTCC
 
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JMSF043G09- ATTCCAACAAGCTGGCGATTGATAATCAAGACACCACTATCAAGCCCAAGAACAGGCGAA
                      ____________________________________________________________
consensus ATTCCAACAAGCTGGCGATTGATAATCAAGACACCACTATCAAGCCCAAGAACAGGCGAA
 
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JMSF043G09- TCATGGGAGCTGGAGGGCCTGATGAAGATGAGTATAGATGGCCGCCATGGCTGAAACCCA
                      ____________________________________________________________
consensus TCATGGGAGCTGGAGGGCCTGATGAAGATGAGTATAGATGGCCGCCATGGCTGAAACCCA
 
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JMSF043G09- TGCTCAAAGAACGCTTCTTTGTTCAATGCAATCTCCACGCCGATTCCCACAAGAGCGAAT
                      ____________________________________________________________
consensus TGCTCAAAGAACGCTTCTTTGTTCAATGCAATCTCCACGCCGATTCCCACAAGAGCGAAT
 
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JMSF043G09- GCAATATGTACTGCCTTGACTGTATGAATGGCGCTCTCTGCTCTCTCTGTTTGCCCAATC
                      ____________________________________________________________
consensus GCAATATGTACTGCCTTGACTGTATGAATGGCGCTCTCTGCTCTCTCTGTTTGCCCAATC
 
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JMSF043G09- ACCCTCACCACCGCGCCATTCAGATTAGGAGATCATCGTACCATGATGTGATCAGAGTTA
                      ____________________________________________________________
consensus ACCCTCACCACCGCGCCATTCAGATTAGGAGATCATCGTACCATGATGTGATCAGAGTTA
 
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JMSF043G09- ACGAGATTCAGAAGTTCCTGGACATCTCCGCCGTCCAGACCTACATTATCAACAGCGCCA
                      ____________________________________________________________
consensus ACGAGATTCAGAAGTTCCTGGACATCTCCGCCGTCCAGACCTACATTATCAACAGCGCCA
 
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JMSF043G09- AAGTTGTGTTCTTGAACGAAAGGCCCCAACCCAGACCCGGCAAGGGCGTCACCAATACTT
                      ____________________________________________________________
consensus AAGTTGTGTTCTTGAACGAAAGGCCCCAACCCAGACCCGGCAAGGGCGTCACCAATACTT
 
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JMSF043G09- GTGAAGTTTGCCGCCGCAGCCTTCTTGATTCTTTCCGTTTCTGCTCTTTGGGCTGCAAGA
                      ____________________________________________________________
consensus GTGAAGTTTGCCGCCGCAGCCTTCTTGATTCTTTCCGTTTCTGCTCTTTGGGCTGCAAGA
 
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JMSF043G09- TTGTCGGGACATCGAAGAATTTCGTGAGAAACCCGAAACGGTTGCCGGAGAAGAAGAGGA
JMFN040E12+ CGGAGAAGAAGAGGA
                      ____________________________________________________________
consensus TTGTCGGGACATCGAAGAATTTCGTGAGAAACCCGAAACGGTTGCCGGAGAAGAAGAGGA
 
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JMSF043G09- CGGCGCCGCCGCCGTCGGACTCGGAGGATTCCTCGTATTGCAGCCATAGCCATGGGCGGG
JMFN040E12+ CGGCGCCGCCGCCGTCGGACTCGGAGGATTCCTCGTATTGCAGCCATAGCCATGGGCGGG
                      ____________________________________________________________
consensus CGGCGCCGCCGCCGTCGGACTCGGAGGATTCCTCGTATTGCAGCCATAGCCATGGGCGGG
 
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JMSF043G09- TGAGCAGAAAGGTGCAGAGCTTCACGCCGTCAACGCCGCCGCCAACTTGCGTTAATTACA
JMFN040E12+ TGAGCAGAAAGGTGCAGAGCTTCACGCCGTCAACGCCGCCGCCAACTTGCGTTAATTACA
                      ____________________________________________________________
consensus TGAGCAGAAAGGTGCAGAGCTTCACGCCGTCAACGCCGCCGCCAACTTGCGTTAATTACA
 
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JMSF043G09- AAACTGCCAAGCGAAGAAAGGGAATTCCACATAGAGCCCCAATGGGAGGGCTCATTATTG
JMFN040E12+ AAACTGCCAAGCGAAGAAAGGGAATTCCACATAGAGCCCCAATGGGAGGGCTCATTATTG
                      ____________________________________________________________
consensus AAACTGCCAAGCGAAGAAAGGGAATTCCACATAGAGCCCCAATGGGAGGGCTCATTATTG
 
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JMSF043G09- AATACTAGGCTTTTGCAGTTTTGCTCACAGGCCCTTCATCTTCTCCTAAATTACCCTA
JMFN040E12+ AATACTAGGCTTTTGCAGTTTTGCTCACAGGCCCTTCATTTTCTCCTAAATTACCCTAGC
                      ____________________________________________________________
consensus AATACTAGGCTTTTGCAGTTTTGCTCACAGGCCCTTCATTTTCTCCTAAATTACCCTAGC
 
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rJMSF043G09+ A
JMFN040E12+ TCACCCATAGCCATGTTGTTGTATGTATATAGTAGCCACTAATAGAAGAATGAATGTTAA
                      ____________________________________________________________
consensus TCACCCATAGCCATGTTGTTGTATGTATATAGTAGCCACTAATAGAAGAATGAATGTTAA
 
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rJMSF043G09+ AAAAAAAAAAAAGTAGGGGCAGAAGTTGGAATAAGTAAATGTGGAAGGACTAAAGCCGCT
JMFN040E12+ AAAAAAAAAAAAGTAGGGGCAGAAGTTGGAATAAGTAAATGTGGAAGGACTAAAGCCGCT
                      ____________________________________________________________
consensus AAAAAAAAAAAAGTAGGGGCAGAAGTTGGAATAAGTAAATGTGGAAGGACTAAAGCCGCT
 
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rJMSF043G09+ AAGTTAGAAGTTTGGCTTAGAAAATAAGCTATATATATATTACTATAATAATAATAATAG
JMFN040E12+ AAGTTAGAAGTTTGGCTTAGAAAATAAGCTATATATATATTACTATAATAATAATAATAG
                      ____________________________________________________________
consensus AAGTTAGAAGTTTGGCTTAGAAAATAAGCTATATATATATTACTATAATAATAATAATAG
 
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rJMSF043G09+ TTTGATAATGAAATATGAGATACTAGAGTGGTTGTTTACACATATAAACAGGTTTTTGTG
JMFN040E12+ TTTGATAATGAAATATGAGATACTAGAGTGGTTGTTTACACATAT-AACAGGTTTTTGTG
                      ____________________________________________________________
consensus TTTGATAATGAAATATGAGATACTAGAGTGGTTGTTTACACATATAAACAGGTTTTTGTG
 
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rJMSF043G09+ TGTATGAATGAAAAAT
JMFN040E12+ TGTATGAATGAAAAATGTAAATATCGTTTTCTGTGTTTATATGCCGTAATGGAATATCAC
                      ____________________________________________________________
consensus TGTATGAATGAAAAATGTAAATATCGTTTTCTGTGTTTATATGCCGTAATGGAATATCAC
 
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JMFN040E12+ TTTGTTATTTTTTTATXXXXXXXXXXXXXXXXXXCTCGAGACTAGTTCTCTCTCTCTCTC
                      ____________________________________________________________
consensus TTTGTTATTTTTTTATNNNNNNNNNNNNNNNNNNCTCGAGACTAGTTCTCTCTCTCTCTC