| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF016K19 | Sequence | 545 | 011868 (7) | ref|XP_006340738.1| | 4e-45 | PREDICTED: calcium-dependent protein kinase 16-like [Solanum tuberosum] | 792 | 008939 (6) | ref|XP_009759436.1| | 7e-84 | PREDICTED: calcium-dependent protein kinase 28-like [Nicotiana sylvestris] |
| JMFF047J14 | Sequence | 619 | 011868 (7) | ref|XP_006340738.1| | 7e-22 | PREDICTED: calcium-dependent protein kinase 16-like [Solanum tuberosum] | 593 | 008939 (6) | ref|XP_009759436.1| | 2e-47 | PREDICTED: calcium-dependent protein kinase 28-like [Nicotiana sylvestris] |
| JMFN016K11 | Sequence | 533 | 008939 (6) | ref|XP_009759436.1| | 7e-15 | PREDICTED: calcium-dependent protein kinase 28-like [Nicotiana sylvestris] | |||||
| JMSF001P02 | Sequence | 331 | 011868 (7) | 678 | 008939 (6) | ref|XP_009759436.1| | 5e-53 | PREDICTED: calcium-dependent protein kinase 28-like [Nicotiana sylvestris] | |||
| JMSF016M18 | Sequence | 481 | 011868 (7) | 780 | 008939 (6) | ref|XP_009759436.1| | 9e-92 | PREDICTED: calcium-dependent protein kinase 28-like [Nicotiana sylvestris] | |||
| JMSF035F08 | Sequence | 734 | 008939 (6) | ref|XP_009759436.1| | 4e-88 | PREDICTED: calcium-dependent protein kinase 28-like [Nicotiana sylvestris] | |||||
This contig is upended
. : . : . : . : . : . :
rJMSF035F08+ GAGGAGTTGGCCGATCTCAA
rJMSF016M18+ AGCAGTTTGCTTTACGGCATTAGCAACCACACTAGACGATGAGGAGTTGGCTGATCTAAA
rJMFF016K19+ AA
____________________________________________________________
consensus AGCAGTTTGCTTTACGGCATTAGCAACCACACTAGACGATGAGGAGTTGGCTGATCTCAA
. : . : . : . : . : . :
rJMSF035F08+ AGATCAATTTGCTGCCATTGATGTGGATAAAAATGGTGTCATTAGTCTTGAAGAAATGAG
rJMSF016M18+ AGATCAATTTGCTGCCATTGATGTGGATAAAAATGGTGTCATTAGTCTTGAAGAAATGAG
rJMFF016K19+ AGATCAATTTGCTGCCATTGATGTGGATAAAAATGGTGTCATTAGTCTTGAAGAAATGAG
____________________________________________________________
consensus AGATCAATTTGCTGCCATTGATGTGGATAAAAATGGTGTCATTAGTCTTGAAGAAATGAG
. : . : . : . : . : . :
rJMSF035F08+ ACAGGCTCTTGCTAAGGATCTTCCATGGAAGATGAAAGAATCACGTGTTCTTGAGATTCT
rJMSF016M18+ ACAGGCTCTTGCTAAGGATCGTCCATGGAGAATGAAAGACTCACGCGTAATTGAGATTCT
rJMFF016K19+ ACAGGCTCTTGCTAAGGATCGTCCATGGAGAATGAAAGACTCACGCGTAATTGAGATTCT
____________________________________________________________
consensus ACAGGCTCTTGCTAAGGATCGTCCATGGAGAATGAAAGACTCACGCGTAATTGAGATTCT
. : . : . : . : . : . :
rJMSF035F08+ TCAAGCGATTGACAGCAATACAGACGGACTTGTGGATTTCCAAGAGTTCGTTGCTGCCAC
rJMSF016M18+ TCAAGCGATTGATGTCAATACTGATGGTCTCATAGATTTCCCCGAGTTTGTTGCTGCCAC
rJMFF047J14+ GAGTTTGTTGCTGCCAC
rJMFF016K19+ TCAAGCGATTGATGTCAATACTGATGGTCTCATAGATTTCCCCGAGTTTGTTGCTGCCAC
rJMSF001P02+ GAGTTTGTTGCTGCCAC
____________________________________________________________
consensus TCAAGCGATTGATGTCAATACTGATGGTCTCATAGATTTCCCCGAGTTTGTTGCTGCCAC
. : . : . : . : . : . :
rJMSF035F08+ GTTACATGTCAACCAGATGGAGGAACATAATTCGGAAAATTGGCAACAAAGATCGCAAGC
rJMSF016M18+ TTTACATGTTCATCAGATGGAGGAACACAACTCAGAAAAATGGCTGCAAAGATCACAAGC
rJMFF047J14+ TTTACATGTTCATCAGATGGAGGAACACAACTCAGAAAAATGGCTGCAAAGATCACAAGC
rJMFF016K19+ TTTACATGTTCATCAGATGGAGGAACACAACTCAGAAAAATGGCTGCAAAGATCACAAGC
rJMSF001P02+ TTTACATGTTCATCAGATGGAGGAACACAACTCAGAAAAATGGCTGCAAAGATCACAAGC
____________________________________________________________
consensus TTTACATGTTCATCAGATGGAGGAACACAACTCAGAAAAATGGCTGCAAAGATCACAAGC
. : . : . : . : . : . :
rJMSF035F08+ TGCTTTTGAGAAATTTGACATCGACAAAGATGGATATATAACTCAAGAAGAACTTAAATT
rJMSF016M18+ TGCTTTTCAGAAATTCGATGTTGATAGAGATGGATTTATTACTCCCGAAGAACTTAAAAT
rJMFF047J14+ TGCTTTTCAGAAATTCGATGTTGATAGAGATGGATTTATTACTCCCGAAGAACTTAAAAT
rJMFF016K19+ TGCTTTTCAGAAATTCGATGTTGATAGAGATGGATTTATTACTCCCGAAGAACTTAAAAT
rJMSF001P02+ TGCTTTTCAGAAATTCGATGTTGATAGAGANGGANTTATTACTCCCGAAGAACTTAAAAT
____________________________________________________________
consensus TGCTTTTCAGAAATTCGATGTTGATAGAGATGGATTTATTACTCCCGAAGAACTTAAAAT
. : . : . : . : . : . :
rJMSF035F08+ GCATACCGGATTAAGAGGCTCCATAGACCCACTCCTAGAGGAAGCAGACATCGACAAAGA
rJMSF016M18+ GCATACGGGCTTAAAAGGTTCCATAGACCCACTTCTAGAGGAAGCAGACATCGACAAAGA
rJMFF047J14+ GCATACGGGCTTAAAAGGTTCCATAGACCCACTTCTAGAGGAAGCAGACATCGACAAAGA
rJMFF016K19+ GCATACGGGCTTAAAAGGTTCCATAGACCCACTTCTAGAGGAAGCAGACATCGACAAAGA
rJMSF001P02+ GCATACGGGCTTAAAAGGTTCCATAGACCCACTTCTAGAGGAAGCAGACATCGACAAAGA
JMFN016K11- GGGCTTAAAAGGTTCCATAGACCCACTTCTAGAGGAAGCAGACATCGACAAAGA
____________________________________________________________
consensus GCATACGGGCTTAAAAGGTTCCATAGACCCACTTCTAGAGGAAGCAGACATCGACAAAGA
. : . : . : . : . : . :
rJMSF035F08+ TGGGAAGATAAGCTTATCAGAGTTCCGCAAGCTTCTAAGAACAGCAAGCATGGGCTCACG
rJMSF016M18+ TGGGAAGATAAGCTTATCAGAATTCCGCAGGCTTTTAAGAACTGCAAGTATGAGTTCACA
rJMFF047J14+ TGGGAAGATAAGCTTATCAGAATTCCGCAGGCTTTTAAGAACTGCAAGTATGAGTTCACA
rJMFF016K19+ TGGGAAGATAAGCTTATCAGAATTCCGCAGGCTTTTAAGAACTGCAAGTATGAGTTCACA
rJMSF001P02+ TGGGAAGATAAGCTTATCAGAATTCCGCAGGCTTTTAAGAACTGCAAGTATGAGTTCACA
JMFN016K11- TGGGAAGATAAGCTTATCAGAATTCCGCAGGCTTTTAAGAACTGCAAGTATGAGTTCACA
____________________________________________________________
consensus TGGGAAGATAAGCTTATCAGAATTCCGCAGGCTTTTAAGAACTGCAAGTATGAGTTCACA
. : . : . : . : . : . :
rJMSF035F08+ GACAGTCTCTAGTCCATCTACAAGGCGAGGCTCAAGACTTTAAGG
rJMSF016M18+ GACAATTACTAGCCCCTCCGTGAAGGGAGGAGGTTCACGAGGACTTTCGAAGTGAAAGAG
rJMFF047J14+ GACAATTACTAGCCCCTCCGTGAAGGGAGGAGGTTCACGAGGACTTTCGAAGTGAAAGAG
rJMFF016K19+ GACAATTACTAGCCCCTCCGTGAAGGGAGGAGGTTCACGAGGACTTTCGAAGTGAAAGAG
rJMSF001P02+ GACAATTACTAGCCCCTCCGTGAAGGGAGGAGGTTCACGAGGACTTTCGAAGTGAAAGAG
JMFN016K11- GACAATTACTAGCCCCTCCGTGAAGGGAGGAGGTTCACGAGGACTTTCGAAGTGAAAGAG
____________________________________________________________
consensus GACAATTACTAGCCCCTCCGTGAAGGGAGGAGGTTCACGAGGACTTTCGAAGTGAAAGAG
. : . : . : . : . : . :
rJMSF016M18+ TTTTTATGGAGATATGCGTTAGAGCAGCAAAGTTTCCTTTCTCCTAGATTTCTGTCCTGG
rJMFF047J14+ TTTTTATGGAGATATGCGTTAGAGCAGCAAAGTTTCCTTTCTCCTAGATTTCTGTCCTGG
rJMFF016K19+ TTTTTATGGAGATATGCGTTAGAGCAGCAAAGTTTCCTTTCTCCTAGATTTCTGTCCTGG
rJMSF001P02+ TTTTTATGGAGATATGCGTTAGAGCAGCAAAGNTTCCTTTCTCCTAGATTTCTGTCCTGG
JMFN016K11- TTTTTATGGAGATATGCGTTAGAGCAGCAAAGTTTCCTTTCTCCTAGATTTCTGTCCTGG
____________________________________________________________
consensus TTTTTATGGAGATATGCGTTAGAGCAGCAAAGTTTCCTTTCTCCTAGATTTCTGTCCTGG
. : . : . : . : . : . :
rJMSF016M18+ GGTCATCGTATACAGTTGCTTTTTCTGCTTGTCTGCAAGTAGCCGAGGGATGCATCGCCC
rJMFF047J14+ GGTCATCGTATACAGTTGCTTTTTCTGCTTGTCTGCAAGTAGCCGAGGGATGCATCGCCC
rJMFF016K19+ GGTCATCGTATACAGTTGCTTTTTCTGCTTGTCTGCAAGTAGCCGAGGGATGCATCGCCC
rJMSF001P02+ GGTCATCGTATACAGTTGCTNTTTCTGCTTGTCTGCAAGTAGCCGAGGGATGCATCGCCC
JMFN016K11- GGTCATCGTATACAGTTGCTTTTTCTGCTTGTCTGCAAGTAGCCGAGGGATGCATCGCCC
____________________________________________________________
consensus GGTCATCGTATACAGTTGCTTTTTCTGCTTGTCTGCAAGTAGCCGAGGGATGCATCGCCC
. : . : . : . : . : . :
rJMSF016M18+ CCGACTTGCTTCTTCCCTCCACAAAAGCATTTTGTAATTCCTAATTTGGTCATTGTGGTA
rJMFF047J14+ CCGACTTGCTTCTTCCCTCCACAAAAGCATTTTGTAATTCCTAATTTGGTCATTGTGGTA
rJMFF016K19+ CCGACTTGCTTCTTCCCTCCACAAAAGCATTTTGTAATTCCTAATTTGGTCATTGTGGTA
rJMSF001P02+ CCGACTTGCTTCTTCCCTCCACAAAAGCATTTTGTAATTCCTAATTTGGTCATTGTGGNA
JMFN016K11- CCGACTTGCTTCTTCCCTCCACAAAAGCATTTTGTAATTCCTAATTTGGTCATTGTGGTA
____________________________________________________________
consensus CCGACTTGCTTCTTCCCTCCACAAAAGCATTTTGTAATTCCTAATTTGGTCATTGTGGTA
. : . : . : . : . : . :
rJMSF016M18+ TAGTTATTTAGAGGGATGGCATTCCTAATTTGGTCATTGTGGTATAGCTATTTAGTGTTG
rJMFF047J14+ TAGTTATTTAGAGGGATGGCATTCCTAATTTGGTCATTGTGGTATAGCTATTTAGTGTTG
rJMFF016K19+ TAGTTATTTAGAGGGATGGCATTCCTAATTTGGTCATTGTGGTATAGCTATTTAGTGTTG
rJMSF001P02+ TAGTTATTTAGAGGGATGGCATTCCTANTTTGGTCATTGTGGNATAGCTATTTAGTGTTG
JMFN016K11- TAGTTATTTAGAGGGATGGCATTCCTAATTTGGTCATTGTGGTATAGCTATTTAGTGTTG
____________________________________________________________
consensus TAGTTATTTAGAGGGATGGCATTCCTAATTTGGTCATTGTGGTATAGCTATTTAGTGTTG
. : . : . : . : . : . :
rJMFF047J14+ TGAGTCTCCTTTGCAAA
rJMFF016K19+ TGAGTCTCCTTTGCAAA-GTGAAATATGCAATTGTGCAATGTATGTGTGTGGAAAAAATG
rJMSF001P02+ TGAGTCTCCTTTGCAAACGTGAAATATGCAANTGTGCAATGTATNTGTGTGGAAAAAATG
JMFN016K11- TGAGTCTCCTTTGCAAA-GTGAAATATGCAATTGTGCAATGTATGTGTGTGGAAAAAATG
____________________________________________________________
consensus TGAGTCTCCTTTGCAAA-GTGAAATATGCAATTGTGCAATGTATGTGTGTGGAAAAAATG
. : . : . : . : . : . :
rJMFF016K19+ CTTAAAAA
rJMSF001P02+ CTTAAAAA
JMFN016K11- CTTAAAAAGTGTTGACTTATCAAGTGTTTGATGGATGTGGTTCAATAAAATTTAAGGATT
____________________________________________________________
consensus CTTAAAAAGTGTTGACTTATCAAGTGTTTGATGGATGTGGTTCAATAAAATTTAAGGATT