Contig 008935:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN003B03Sequence622008935 (6)ref|XP_002510391.1|4e-11660S ribosomal protein L11, putative [Ricinus communis] gb|EEF52578.1| 60S riboso
JMFN010B14Sequence622008935 (6)ref|XP_002510391.1|4e-11660S ribosomal protein L11, putative [Ricinus communis] gb|EEF52578.1| 60S riboso
JMFN012E02Sequence620008935 (6)ref|XP_002510391.1|3e-11660S ribosomal protein L11, putative [Ricinus communis] gb|EEF52578.1| 60S riboso
JMFN014L22Sequence624008935 (6)ref|NP_001266161.1|5e-11460S ribosomal protein L11-like [Cicer arietinum] ref|XP_004510433.1| PREDICTED:
JMSF024D01Sequence719008935 (6)ref|XP_002510391.1|7e-11660S ribosomal protein L11, putative [Ricinus communis] gb|EEF52578.1| 60S riboso683008935 (6)ref|XP_002510391.1|4e-11660S ribosomal protein L11, putative [Ricinus communis] gb|EEF52578.1| 60S riboso

Alignment

This contig is upended


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JMFN010B14+                                           AGGAAACATGTTGGTTCAACACATTCAA
JMFN003B03+                                           AGGAAACATGTTGGTTCAACACATTCAA
JMFN012E02+                                                   TGTTGGTTCAACACATTCAA
JMFN014L22+                                                      TGGTTCAACACATTCAA
                      ____________________________________________________________
consensus                                             AGGAAACATGTTGGTTCAACACATTCAA
 
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JMFN010B14+           CCTAGGATTGAAATCATGAAATATTTGAGGCCTTGTTGAGGATAACACCTTCATATTTGA
JMSF024D01+                             AAATATTTGAGGCCTTGTTGAGGATAACACCTTCATATTTGA
rJMSF024D01-                            AAATATTTGAGGCCTTGTTGAGGATAACACCTTCATATTTGA
JMFN003B03+           CCTAGGATTGAAACCATGAAATATTTGAGGCCTTGTTGAGGATAACACCTTCATATTTGA
JMFN012E02+           CCTAGGATTGAAATCATGAAATATTTGAGGCCTTGTTGAGGATAACACCTTCATATTTGA
JMFN014L22+           CCTAGGATTGAAATCATGAAATATTTGAGGCC-TGTTGAGGATAACACCTTCATATTTGA
                      ____________________________________________________________
consensus             CCTAGGATTGAAATCATGAAATATTTGAGGCCTTGTTGAGGATAACACCTTCATATTTGA
 
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JMFN010B14+           CTTGGAACCACTTCATTGCATCATCCTTAGTGACCCTGTGCTGGATTCCAACCCTAGCCT
JMSF024D01+           CTTGGAACCACTTCATTGCATCATCCTTAGTGACCCTGTGCTGGATTCCAACCCTAGCCT
rJMSF024D01-          CTTGGAACCACTTCATTGCATCATCCTTAGTGACCCTGTGCTGGATTCCAACCCTAGCCT
JMFN003B03+           CTTGGAACCACTTCATTGCATCATCCTTAGTGACCCTGTGCTGGATTCCAACCCTAGCCT
JMFN012E02+           CTTGGAACCACTTCATTGCATCATCCTTAGTGACCCTGTGCTGGATTCCAACCCTAGCCT
JMFN014L22+           CTTGGAACCACTTCATTGCATCATCCTTAGTGACCCTGTGCTGGATTCCAACCCTAGCCT
                      ____________________________________________________________
consensus             CTTGGAACCACTTCATTGCATCATCCTTAGTGACCCTGTGCTGGATTCCAACCCTAGCCT
 
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JMFN010B14+           TGCACCTACGGCGGCGAGCAACTCTGTAACCGGGGCGTTCCAAGACAACATAGAAGTCCA
JMSF024D01+           TGCACCTACGGCGGCGAGCAACTCTGTAACCGGGGCGTTCCAAGACAACATAGAAGTCCA
rJMSF024D01-          TGCACCTACGGCGGCGAGCAACTCTGTAACCGGGGCGTTCCAAGACAACATAGAAGTCCA
JMFN003B03+           TGCACCTACGGCGGCGAGCAACTCTGTAACCGGGGCGTTCCAAGACAACATAGAAGTCCA
JMFN012E02+           TGCACCTACGGCGGCGAGCAACTCTGTAACCGGGGCGTTCCAAGACAACATAGAAGTCCA
JMFN014L22+           TGCACCTACGGCGGCGAGCAACTCTGTAACCGGGGCGTTCCAAGACAACATAGAAGTCCA
                      ____________________________________________________________
consensus             TGCACCTACGGCGGCGAGCAACTCTGTAACCGGGGCGTTCCAAGACAACATAGAAGTCCA
 
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JMFN010B14+           TACCATAAATACCAGTTGAAGGGTCATACTTAATCCCAAGATCAATGTGTTCCTGGATAC
JMSF024D01+           TACCATAAATACCAGTTGAAGGGTCATACTTAATCCCAAGATCAATGTGTTCCTGGATAC
rJMSF024D01-          TACCATAAATACCAGTTGAAGGGTCATACTTAATCCCAAGATCAATGTGTTCCTGGATAC
JMFN003B03+           TACCATAAATACCAGTTGAAGGGTCATACTTAATCCCAAGATCAATGTGTTCCTGGATAC
JMFN012E02+           TACCATAAATACCAGTTGAAGGGTCATACTTAATCCCAAGATCAATGTGTTCCTGGATAC
JMFN014L22+           TACCATAAATACCAGTTGAAGGGTCATACTTAATCCCAAGATCAATGTGTTCCTGGATAC
                      ____________________________________________________________
consensus             TACCATAAATACCAGTTGAAGGGTCATACTTAATCCCAAGATCAATGTGTTCCTGGATAC
 
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JMFN010B14+           CAAAACCAAAGCACCCAGTGTCACTGAAGTTCCTCCTTAGCAATTCATATTCCTTAACTT
JMSF024D01+           CAAAACCAAAGCACCCAGTGTCACTGAAGTTCCTCCTTAGCAATTCATATTCCTTAACTT
rJMSF024D01-          CAAAACCAAAGCACCCAGTGTCACTGAAGTTCCTCCTTAGCAATTCATATTCCTTAACTT
JMFN003B03+           CAAAACCAAAGCACCCAGTGTCACTGAAGTTCCTCCTTAGCAATTCATATTCCTTAACTT
JMFN012E02+           CAAAACCAAAGCACCCAGTGTCACTGAAGTTCCTCCTTAGCAATTCATATTCCTTAACTT
JMFN014L22+           CAAAACCAAAGCACCCAGTGTCACTGAAGTTCCTCCTTAGCAATTCATATTCCTTAACTT
                      ____________________________________________________________
consensus             CAAAACCAAAGCACCCAGTGTCACTGAAGTTCCTCCTTAGCAATTCATATTCCTTAACTT
 
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JMFN010B14+           TCAACCCACTCTCGAGAAGCTGCATCGCCTTATCTCCCCTGACCGTGACATAGCACGCAA
JMSF024D01+           TCAACCCACTCTCGAGAAGCTGCATCGCCTTATCTCCCCTGACCGTGACATAGCACGCAA
rJMSF024D01-          TCAACCCACTCTCGAGAAGCTGCATCGCCTTATCTCCCCTGACCGTGACATAGCACGCAA
JMFN003B03+           TCAACCCACTCTCGAGAAGCTGCATCGCCTTATCTCCCCTGACCGTGACATAGCACGCAA
JMFN012E02+           TCAACCCACTCTCGAGAAGCTGCATCGCCTTATCTCCCCTGACCGTGACATAGCACGCAA
JMFN014L22+           TCAACCCACTCTCGAGAAGCTGCATCGCCTTATCTCCCCTGACCGTGACATAGCACGCAA
                      ____________________________________________________________
consensus             TCAACCCACTCTCGAGAAGCTGCATCGCCTTATCTCCCCTGACCGTGACATAGCACGCAA
 
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JMFN010B14+           TCTTTTCATTACGCCTGATACCAAAGGACCTCACAGTGTACCTTGCTTTGGAGAAAACGG
JMSF024D01+           TCTTTTCATTACGCCTGATACCAAAGGACCTCACAGTGTACCTTGCTTTGGAGAAAACGG
rJMSF024D01-          TCTTTTCATTACGCCTGATACCAAAGGACCTCACAGTGTACCTTGCTTTGGAGAAAACGG
JMFN003B03+           TCTTTTCATTACGCCTGATACCAAAGGACCTCACAGTGTACCTTGCTTTGGAGAAAACGG
JMFN012E02+           TCTTTTCATTACGCCTGATACCAAAGGACCTCACAGTGTACCTTGCTTTGGAGAAAACGG
JMFN014L22+           TCTTTTCATTACGCCTGATACCAAAGGACCTCACAGTGTACCTTGCTTTGGAGAAAACGG
                      ____________________________________________________________
consensus             TCTTTTCATTACGCCTGATACCAAAGGACCTCACAGTGTACCTTGCTTTGGAGAAAACGG
 
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JMFN010B14+           GGGTTTGTCCACTCAGTTGCTCCAAAACCTTAGCGGCTCTGGTGAGACGATCGCCGCTCT
JMSF024D01+           GGGTTTGTCCACTCAGTTGCTCCAAAACCTTAGCGGCTCTGGTGAGACGATCGCCGCTCT
rJMSF024D01-          GGGTTTGTCCACTCAGTTGCTCCAAAACCTTAGCGGCTCTGGTGAGACGATCGCCGCTCT
JMFN003B03+           GGGTTTGTCCACTCAGTTGCTCCAAAACCTTAGCGGCTCTGGTGAGACGATCGCCGCTCT
JMFN012E02+           GGGTTTGTCCACTCAGTTGCTCCAAAACCTTAGCGGCTCTGGTGAGACGATCGCCGCTCT
JMFN014L22+           GGGTTTGTCCACTCAGTTGCTCCAAAACCTTAGCGGCTCTGGTGAGACGATCGCCGCTCT
                      ____________________________________________________________
consensus             GGGTTTGTCCACTCAGTTGCTCCAAAACCTTAGCGGCTCTGGTGAGACGATCGCCGCTCT
 
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JMFN010B14+           CACCGACGGAGATGTTGAGGACCAGCTTCTGGACCTTGATCTCCCTCATTGGGTTGTTCA
JMSF024D01+           CACCGACGGAGATGTTGAGGACCAGCTTCTGGACCTTGATCTCCCTCATTGGGTTGTTCA
rJMSF024D01-          CACCGACGGAGATGTTGAGGACCAGCTTCTGGACCTTGATCTCCCTCATTGGGTTGTTCA
JMFN003B03+           CACCGACGGAGATGTTGAGGACCAGCTTCTGGACCTTGATCTCCCTCATTGGGTTGTTCA
JMFN012E02+           CACCGACGGAGATGTTGAGGACCAGCTTCTGGACCTTGATCTCCCTCATTGGGTTGTTCA
JMFN014L22+           CACCGACGGAGATGTTGAGGACCAGCTTCTGGACCTTGATCTCCCTCATTGGGTTGTTCA
                      ____________________________________________________________
consensus             CACCGACGGAGATGTTGAGGACCAGCTTCTGGACCTTGATCTCCCTCATTGGGTTGTTCA
 
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JMFN010B14+           ACTTCTTCTCTGATGCCATGGCTTCCCGGTGAGGTTGCAGATTTGCAGATTTGG      
JMSF024D01+           ACTTCTTCTCTGATGCCATGGCTT                                    
rJMSF024D01-          ACTTCTTCTCTGATGCCATGGCTT                                    
JMFN003B03+           ACTTCTTCTCTGATGCCATGGCTTCCCGGTGAGGTTGCAGATTTGCAGATTTGG      
JMFN012E02+           ACTTCTTCTCTGATGCCATGGCTTCCCGGTGAGGTTGCAGATTTGCAGATTTGGGAGACT
JMFN014L22+           ACTTCTTCTCTGATGCCATGGCTTCCCGGTGAGGTTGCAGATTTGCAGATTTGGGAGACT
                      ____________________________________________________________
consensus             ACTTCTTCTCTGATGCCATGGCTTCCCGGTGAGGTTGCAGATTTGCAGATTTGGGAGACT