| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002P15 | Sequence | 520 | 008927 (5) | ref|XP_003629768.1| | 9e-21 | Protein transport protein Sec61 beta subunit [Medicago truncatula] gb|AET04244.1 | 493 | 008927 (5) | ref|XP_003629768.1| | 7e-21 | Protein transport protein Sec61 beta subunit [Medicago truncatula] gb|AET04244.1 |
| JMFN002B02 | Sequence | 465 | 008927 (5) | ref|XP_003629768.1| | 6e-21 | Protein transport protein Sec61 beta subunit [Medicago truncatula] gb|AET04244.1 | |||||
| JMFN002G09 | Sequence | 431 | 008927 (5) | ref|XP_003629768.1| | 3e-21 | Protein transport protein Sec61 beta subunit [Medicago truncatula] gb|AET04244.1 | |||||
| JMFN011H22 | Sequence | 506 | 008927 (5) | ref|XP_003629768.1| | 4e-21 | Protein transport protein Sec61 beta subunit [Medicago truncatula] gb|AET04244.1 | |||||
This contig is upended
. : . : . : . : . : . :
JMFN011H22+ AAAAAACAAATGAGAGAAGTAAAATTTTGA
____________________________________________________________
consensus AAAAAACAAATGAGAGAAGTAAAATTTTGA
. : . : . : . : . : . :
JMFN002B02+ GATCCTGAAGAAAATTTTGATATGTCATCA
rJMFF002P15- GACTGATCCTGAAGAAAATTTTGATATGTCATCA
JMFN002G09+ AATGCAGCCTTGACTGATCCTGAAGAAAATTTTGATATGTCATCA
JMFF002P15+ GAGCACAATGCAGCCTTGACTGATCCTGAAGAAAATTTTGATATGTCATCA
JMFN011H22+ GAAGAGGCAGAGCACAATGCAGCCTTGACTGATCCTGAAGAAAATTTTGATATGTCATCA
____________________________________________________________
consensus GAAGAGGCAGAGCACAATGCAGCCTTGACTGATCCTGAAGAAAATTTTGATATGTCATCA
. : . : . : . : . : . :
JMFN002B02+ --AAAAACTCCAATACAATACAAAACAAACCATTGAAATGGAGAGAGAGCCTATTGAACA
rJMFF002P15- --AAAAACTCCAATACAATACAAAACAAACCATTGAAATGGAGAGAGAGCCTATTGAACA
JMFN002G09+ AAAAAAACTCCAATACAATACAAAACAAACCATTGAAATGGAGAGAGAGCCTATTGAACA
JMFF002P15+ --AAAAACTCCAATACAATACAAAACAAACCATTGAAATGGAGAGAGAGCCTATTGAACA
JMFN011H22+ --AAAAACTCCAATACAATACAAAACAAACCATTGAAATGGAGAGAGAGCCTATTGAACA
____________________________________________________________
consensus --AAAAACTCCAATACAATACAAAACAAACCATTGAAATGGAGAGAGAGCCTATTGAACA
. : . : . : . : . : . :
JMFN002B02+ AGTTTAAGCTTCAAAACTGAGTGTACTAAAAGCCTGATTCATCCACATTTACTGGTTAGG
rJMFF002P15- AGTTTAAGCTTCAAAACTGAGTGTACTAAAAGCCTGATTCATCCACATTTACTGGTTAGG
JMFN002G09+ AGTTTAAGCTTCAAAACTGAGTGTACTAAAAGCCTGATTCATCCACATTTACTGGTTAGG
JMFF002P15+ AGTTTAAGCTTCAAAACTGAGTGTACTAAAAGCCTGATTCATCCACATTTACTGGTTAGG
JMFN011H22+ AGTTTAAGCTTCAAAACTGAGTGTACTAAAAGCCTGATTCATCCACATTTACTGGTTAGG
____________________________________________________________
consensus AGTTTAAGCTTCAAAACTGAGTGTACTAAAAGCCTGATTCATCCACATTTACTGGTTAGG
. : . : . : . : . : . :
JMFN002B02+ ATTCTCCTCTAAGCTTCTTTGCGGAAGTACAGCTTGCCCATCACGTGGAGAACAGCGACG
rJMFF002P15- ATTCTCCTCTAAGCTTCTTTGCGGAAGTACAGCTTGCCCATCACGTGGAGAACAGCGACG
JMFN002G09+ ATTCTCCTCTAAGCTTCTTTGCGGAAGTACAGCTTGCCCATCACGTGGAGAACAGCGACG
JMFF002P15+ ATTCTCCTCTAAGCTTCTTTGCGGAAGTACAGCTTGCCCATCACGTGGAGAACAGCGACG
JMFN011H22+ ATTCTCCTCTAAGCTTCTTTGCGGAAGTACAGCTTGCCCATCACGTGGAGAACAGCGACG
____________________________________________________________
consensus ATTCTCCTCTAAGCTTCTTTGCGGAAGTACAGCTTGCCCATCACGTGGAGAACAGCGACG
. : . : . : . : . : . :
JMFN002B02+ AAAGCTATGAAGCCAATGCTCATTATAAGAACAACGTTGGGAGAAATCTTCAGTCCCGGG
rJMFF002P15- AAAGCTATGAAGCCAATGCTCATTATAAGAACAACGTTGGGAGAAATCTTCAGTCCCGGG
JMFN002G09+ AAAGCTATGAAGCCAATGCTCATTATAAGAACAACGTTGGGAGAAATCTTCAGTCCCGGG
JMFF002P15+ AAAGCTATGAAGCCAATGCTCATTATAAGAACAACGTTGGGAGAAATCTTCAGTCCCGGG
JMFN011H22+ AAAGCTATGAAGCCAATGCTCATTATAAGAACAACGTTGGGAGAAATCTTCAGTCCCGGG
____________________________________________________________
consensus AAAGCTATGAAGCCAATGCTCATTATAAGAACAACGTTGGGAGAAATCTTCAGTCCCGGG
. : . : . : . : . : . :
JMFN002B02+ GCGTCATCAGTGTAAAACTGGAGCATAGTTCCACTCGCCCCGCCAGCAGCAGCACTTCCA
rJMFF002P15- GCGTCATCAGTGTAAAACTGGAGCATAGTTCCACTCGCCCCGCCAGCAGCAGCACTTCCA
JMFN002G09+ GCGTCATCAGTGTAAAACTGGAGCATAGTTCCACTCGCCCCGCCAGCAGCAGCACTTCCA
JMFF002P15+ GCGTCATCAGTGTAAAACTGGAGCATAGTTCCACTCGCCCCGCCAGCAGCAGCACTTCCA
JMFN011H22+ GCGTCATCAGTGTAAAACTGGAGCATAGTTCCACTCGCCCCGCCAGCAGCAGCACTT-CA
____________________________________________________________
consensus GCGTCATCAGTGTAAAACTGGAGCATAGTTCCACTCGCCCCGCCAGCAGCAGCACTTCCA
. : . : . : . : . : . :
JMFN002B02+ CCGCCGCCTGCTGTCCTCCTGCGACGCATGTTTGCAGCAGCAGCTGCAGCAGTGCCTCTT
rJMFF002P15- CCGCCGCCTGCTGTCCTCCTGCGACGCATGTTTGCAGCAGCAGCTGCAGCAGTGCCTCTT
JMFN002G09+ CCGCCGCCTGCTGTCCTCCTGCGACGCATGTTTGCAGCAGCAGCTGCAGCAGTGCCTCTT
JMFF002P15+ CCGCCGCCTGCTGTCCTCCTGCGACGCATGTTTGCAGCAGCAGCTGCAGCAGTGCCTCTT
JMFN011H22+ CCGCCGCCTGCTGTCCTCCTGCGACG-ATGTTTGCAGCAGCAGCTGCAGCAGTGCCTCTT
____________________________________________________________
consensus CCGCCGCCTGCTGTCCTCCTGCGACGCATGTTTGCAGCAGCAGCTGCAGCAGTGCCTCTT
. : . : . : . : . : . :
JMFN002B02+ TGTGGACCAGCTCCCAATGCCATTTCTTAA
rJMFF002P15- TGTGGACCAGCTCCCAATGCCATTTCTTAA
JMFN002G09+ TGTGGACCAGCTCCCAATGCCATTTC
JMFF002P15+ TGTGGACCAGCTCCCAATGCCATTTCTTAA
JMFN011H22+ TGTGGACCAGCTCCCAATGCCATTTCTTAACGTTCACGAATCGAAATTAGGGTTTTGTCT
____________________________________________________________
consensus TGTGGACCAGCTCCCAATGCCATTTCTTAACGTTCACGAATCGAAATTAGGGTTTTGTCT