Contig 008921:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF048O24Sequence419008921 (4)ref|XP_009626872.1|4e-55PREDICTED: dynein light chain LC6, flagellar outer arm-like [Nicotiana tomentos165008921 (4)
JMFN009K11Sequence640008921 (4)ref|XP_011072629.1|5e-39PREDICTED: rho guanine nucleotide exchange factor 8-like [Sesamum indicum]
JMFN013G15Sequence562008921 (4)ref|XP_009626872.1|5e-54PREDICTED: dynein light chain LC6, flagellar outer arm-like [Nicotiana tomentos

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN013G15+ GGCTTGCAGGGCTGTAGTCCATTCAAAGTTCAAACACACCCTG
JMFN009K11+ TTGCAGGGCTGTAGTCCATTCAAAGTTCAAACACACCCTG
                      ____________________________________________________________
consensus GGCTTGCAGGGCTGTAGTCCATTCAAAGTTCAAACACACCCTG
 
. : . : . : . : . : . :
rJMFF048O24- AGCAGTAATTACACATCATCT
JMFN013G15+ GAAGCATCTTCAGCTATGGATTAGAGAGAACAAAAAACTAGCAGTAATTACACATCATCT
JMFN009K11+ GAAGCATCTTCAGCTATGGATTAGAGAGAACAAAAAACTAGCAGTAATTACACATCATCT
                      ____________________________________________________________
consensus GAAGCATCTTCAGCTATGGATTAGAGAGAACAAAAAACTAGCAGTAATTACACATCATCT
 
. : . : . : . : . : . :
rJMFF048O24- ATTACATGAATCTAGTCTGGGCGAGGCCAACCAGATCGGACTCTCATGGAGTCTAAATTA
JMFN013G15+ ATTACATGAATCTAGTCTGGGCGAGGCCAACCAGATCGGACTCTCATGGAGTCTAAATTA
JMFN009K11+ ATTACATGAATCTAGTCTGGGCGAGGCCAACCAGATCGGACTCTCATGGAGTCTAAATTA
                      ____________________________________________________________
consensus ATTACATGAATCTAGTCTGGGCGAGGCCAACCAGATCGGACTCTCATGGAGTCTAAATTA
 
. : . : . : . : . : . :
rJMFF048O24- CAATGAGCTGCCAACCAGTCTGCACTTGGGAGTTTGTAATGGCAGCAGATCAAGGAGAGG
JMFN013G15+ CAATGAGCTGCCAACCAGTCTGCACTTGGGAGTTTGTAATGGCAGCAGATCAAGGAGAGG
JMFF048O24+ TGAGCTGCCAACCAGTCTGCACTTGGGAGTTTGTAATGGCAGCAGATCAAGGAGAGG
JMFN009K11+ CAATGAGCTGCCAACCAGTCTGCACTTGGGAGTTTGTAATGGCAGCAGATCAAGGAGAGG
                      ____________________________________________________________
consensus CAATGAGCTGCCAACCAGTCTGCACTTGGGAGTTTGTAATGGCAGCAGATCAAGGAGAGG
 
. : . : . : . : . : . :
rJMFF048O24- TTGGGGGAGAAGAAGACCCTTTGA
JMFN013G15+ TTGGGGGAGAAGAAGACCCTTTGAAGATGAGGAAGTTGAGAGTCTCCAAGGTGAAGTAGA
JMFF048O24+ TTGGGGGAGAAGAAGACCCTTTGAAGATGAGGAAGTTGAGAGTCTCCAAGGTGAAGTAGA
JMFN009K11+ TTGGGGGAGAAGAAGACCCTTTGAAGATGAGGAAGTTGAGAGTCTCCAAGGTGAAGTAGA
                      ____________________________________________________________
consensus TTGGGGGAGAAGAAGACCCTTTGAAGATGAGGAAGTTGAGAGTCTCCAAGGTGAAGTAGA
 
. : . : . : . : . : . :
JMFN013G15+ TGAAAGTTCCTTTGGTATGAGTGAAGAAACAACTGAAGTGTGAGCCCACTACACATTGCC
JMFF048O24+ TGAAAGTTCCTTTGGTATGAGTGAAGAAACAACTGAAGTGTGAGCCCACTACACATTGCC
JMFN009K11+ TGAAAGTTCCTTTGGTATGAGTGAAGAAACAACTGAAGTGTGAGCCCACTACACATTGCC
                      ____________________________________________________________
consensus TGAAAGTTCCTTTGGTATGAGTGAAGAAACAACTGAAGTGTGAGCCCACTACACATTGCC
 
. : . : . : . : . : . :
JMFN013G15+ ACCCGCCTCCATATTCCTTGTCAAACTCCT
JMFF048O24+ ACCCGCCTCCATATTCCTTGTCAAACTCCT
JMFN009K11+ ACCCGCCTCCATATTCCTTGTCAAACTCCTGCACATACATCATAATCAGGGTAAAAGATG
                      ____________________________________________________________
consensus ACCCGCCTCCATATTCCTTGTCAAACTCCTGCACATACATCATAATCAGGGTAAAAGATG
 
. : . : . : . : . : . :
JMFN009K11+ AAGAAGCAGGAAGAAAGGGTTAAGGGCTACAAGGTTACAGCTTTTACCTTCTTGATGTGA
                      ____________________________________________________________
consensus AAGAAGCAGGAAGAAAGGGTTAAGGGCTACAAGGTTACAGCTTTTACCTTCTTGATGTGA
 
. : . : . : . : . : . :
JMFN009K11+ GCAGCAATGGATTTGCAGTCCAGAACATCATAAAGATCCAGAGCTTGAGAAGCACAAGCC
                      ____________________________________________________________
consensus GCAGCAATGGATTTGCAGTCCAGAACATCATAAAGATCCAGAGCTTGAGAAGCACAAGCC
 
. : . : . : . : . : . :
JMFN009K11+ ATGGCTTGAATCTGCATCTTCCCTGGCATGTCTGTATCTTCAACCAAAGCTTTTCCTTCC
                      ____________________________________________________________
consensus ATGGCTTGAATCTGCATCTTCCCTGGCATGTCTGTATCTTCAACCAAAGCTTTTCCTTCC
 
. : . : . : . : . : . :
JMFN009K11+ AACATCTTCTCTCTTCTGGTTCTTGCTTGTTACCCAGAAAGGAAGGTATCTCTCTTTTTC
                      ____________________________________________________________
consensus AACATCTTCTCTCTTCTGGTTCTTGCTTGTTACCCAGAAAGGAAGGTATCTCTCTTTTTC