Contig 008911:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN006K17Sequence546008911 (4)ref|XP_002285141.1|3e-37PREDICTED: peamaclein [Vitis vinifera] emb|CBI19434.3| unnamed protein product [
JMFN018N11Sequence530008911 (4)ref|XP_002285141.1|2e-37PREDICTED: peamaclein [Vitis vinifera] emb|CBI19434.3| unnamed protein product [
JMFN044D06Sequence500008911 (4)ref|XP_006433597.1|1e-15hypothetical protein CICLE_v10002979mg [Citrus clementina] gb|ESR46837.1| hypoth
JMFN046M01Sequence541008911 (4)ref|XP_002285141.1|3e-37PREDICTED: peamaclein [Vitis vinifera] emb|CBI19434.3| unnamed protein product [

Alignment

This contig is upended


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JMFN018N11+                                                            AAACAAAATAT
JMFN046M01+                                                           TAAACAAAATAT
JMFN006K17+                                                            AAACAAAATAT
                      ____________________________________________________________
consensus                                                             TAAACAAAATAT
 
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JMFN018N11+           ATATTAATAATTTCAGCCCTGCCATGTTATTACAACAGCATATCCTTTGTAATCACAATA
JMFN044D06-                           CCCTGCCATGTTATTACAACAGCATATCCTTTGTGGTCACAATA
JMFN046M01+           ATATTAATAATTTCAGCCCTGCCATGTTATTACAACAGCATATCCTTTGTAATCACAATA
JMFN006K17+           ATATTAATAATTTCAGCCCTGCCATGTTATTACAACAGCATATCCTTTGTAATCACAATA
                      ____________________________________________________________
consensus             ATATTAATAATTTCAGCCCTGCCATGTTATTACAACAGCATATCCTTTGTAATCACAATA
 
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JMFN018N11+           TAAATACTTATGATGATATATTGTATTTCGTTCTGGTACGATGTTATGCTTTTTTATGAG
JMFN044D06-           TTAATACTTATGATGATATATTGAATTTCCTTCTGGAACAATTTTATGCTTTTTTATAAA
JMFN046M01+           TAAATACTTATGATGATATATTGTATTTCGTTCTGGTACGATGTTATGCTTTTTTATGAG
JMFN006K17+           TAAATACTTATGATGATATATTGTATTTCGTTCTGGTACGATATTATGCTTTTTTATGAG
                      ____________________________________________________________
consensus             TAAATACTTATGATGATATATTGTATTTCGTTCTGGTACGATGTTATGCTTTTTTATGAG
 
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JMFN018N11+           GCGGCGTGGATGAATTGACGGGCAGGGCTAAGATGGTTTAAG-GGTGAATTAAGGGCACT
JMFN044D06-           GCGACTAGGATGAATTGACGAGCGAGGCTAAGATGGTTTAAGAGGTGAATTAACGGCACT
JMFN046M01+           GCGGCGTGGATGAATTGACGGGCAGGGCTAAGATGGTTTAAG-GGTGAATTAAGGGCACT
JMFN006K17+           GCGGCGTGGATGAATTGACGGGCAGGGCTAAGATGGTTTAAG-GGTGAATTAAGGGCACT
                      ____________________________________________________________
consensus             GCGGCGTGGATGAATTGACGGGCAGGGCTAAGATGGTTTAAG-GGTGAATTAAGGGCACT
 
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JMFN018N11+           TGGGGTTGCCCTTAGAGTTCTTTTTGTCCCTGTAACAAGGGCACTCGTCCTTGTTTCCAT
JMFN044D06-           TGGGGTTGCCCTTAGAGATCTTTTTGTCCCTGAAACAAGGGCACTCGTCCTAGTATCCAT
JMFN046M01+           TGGGGTTGCCCTTAGAGTTCTTTTTGTCCCTGTAACAAGGGCACTCGTCCTTGTTTCCAT
JMFN006K17+           TGGGGTTGCCCTTAGAGTTCTTTTTGTCCCTGTAACAAGGGCACTCGTCCTTGTTTCCAT
                      ____________________________________________________________
consensus             TGGGGTTGCCCTTAGAGTTCTTTTTGTCCCTGTAACAAGGGCACTCGTCCTTGTTTCCAT
 
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JMFN018N11+           AGGTCCCTGAAGGCACGCAGTTGCATTCCTCACAGCATAGTCCACAGTAC-TTCAAGCAT
JMFN044D06-           AGATCCCTGAAGGCACTCAGATGCATTCCTCACAGCATATTCCACAGTACTTTCAAGCAT
JMFN046M01+           AGGTCCCTGAAGGCACGCAGTTGCATTCCTCACAGCATAGTCCACAGTAC-TTCAAGCAT
JMFN006K17+           AGGTCCCTGAAGGCACGCAGTTGCATTCCTCACAGCATAGTCCACAGTAC-TTCAAGCAT
                      ____________________________________________________________
consensus             AGGTCCCTGAAGGCACGCAGTTGCATTCCTCACAGCATAGTCCACAGTAC-TTCAAGCAT
 
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JMFN018N11+           CTGTCCATCA-TCCCTGCCT-TTGAGCACCTCACCTTGCACTTGGAATCGCAAAAATCTG
JMFN044D06-           CTGTCCATCACTCCCTGCCTATTGAGCACCTCACCTTGCTCTTGGAATCTCAAAAATCTC
JMFN046M01+           CTGTCCATCA-TCCCTGCCT-TTGAGCACCTCACCTTGCACTTGGAATCGCAAAAATCTG
JMFN006K17+           CTGTCCATCA-TCCCTGCCT-TTGAGCACCTCACCTTGCACTTGGAATCGCAAAAATCTG
                      ____________________________________________________________
consensus             CTGTCCATCA-TCCCTGCCT-TTGAGCACCTCACCTTGCACTTGGAATCGCAAAAATCTG
 
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JMFN018N11+           AATCAGCGTGGGTGGGGTTGATGAAAGATGAA-GTAAGAACAAGGGTGGCAAGAATCAAT
JMFN044D06-           AATCAGCGGGGCTGGGGTTTATGAAAGATGAATGTACAAACAACGGTGGCAATAATCCAT
JMFN046M01+           AATCAGCGTGGGTGGGGTTGATGAAAGATGAA-GTAAGAACAAGGGTGGCAAGAATCAAT
JMFN006K17+           AATCAGCGTGGGTGGGGTTGATGAAAGATGAA-GTAAGAACAAGGGTGGCAAGAATCAAT
                      ____________________________________________________________
consensus             AATCAGCGTGGGTGGGGTTGATGAAAGATGAA-GTAAGAACAAGGGTGGCAAGAATCAAT
 
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JMFN018N11+           GCTGCAAAAACTACCTTCATTTTTCCAAACATGAATTGAAGTGGCTATATTTATATATGT
JMFN044D06-           GCTGCAAAAACTACCTTCGTTTTTCCTAACATGAATTGAAGTGGCTATCTCTATATATGC
JMFN046M01+           GCTGCAAAAACTACCTTCATTTTTCCAAACATGAATTGAAGTGGCTATATTTATATATGT
JMFN006K17+           GCTGCAAAAACTACCTTCATTTTTCCAAACATGAATTGAAGTGGCTATATTTATATATGT
                      ____________________________________________________________
consensus             GCTGCAAAAACTACCTTCATTTTTCCAAACATGAATTGAAGTGGCTATATTTATATATGT
 
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JMFN018N11+           ATTGATTAAACAAGCGGAAATTATATATAGTACTAAAGATTGAA                
JMFN044D06-           ATTGATTAA                                                   
JMFN046M01+           ATTGATTAAACAAGCGGAAATTATATATAGTACTAAAGATTGAAGAAGATGGTA      
JMFN006K17+           ATTGATTAAACAAGCGGAAATTATATATAGTACTAAAGATTGAAGAAGATGGTAATGCAA
                      ____________________________________________________________
consensus             ATTGATTAAACAAGCGGAAATTATATATAGTACTAAAGATTGAAGAAGATGGTAATGCAA