Contig 008910:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN006C23Sequence618008910 (3)gb|KJB48499.1|2e-45hypothetical protein B456_008G072300 [Gossypium raimondii]
JMSF016L03Sequence550008910 (3)emb|CDP04362.1|2e-47unnamed protein product [Coffea canephora]742008910 (3)emb|CDP04362.1|1e-44unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF016L03- GGCACCTATTGTATTACATCAAGGATCTCTTTCCCCAGAAGCTT
                      ____________________________________________________________
consensus GGCACCTATTGTATTACATCAAGGATCTCTTTCCCCAGAAGCTT
 
. : . : . : . : . : . :
rJMSF016L03- AATTGCATGGTAAATCCATAGCTACTGACTGAATAAAAACATAGTATATAATAATAATAA
                      ____________________________________________________________
consensus AATTGCATGGTAAATCCATAGCTACTGACTGAATAAAAACATAGTATATAATAATAATAA
 
. : . : . : . : . : . :
rJMSF016L03- CAACAATACCAAGGGCGAGTACCAAAACCTCAAGCTTTACTGTTTAGACAATGTGGATTC
                      ____________________________________________________________
consensus CAACAATACCAAGGGCGAGTACCAAAACCTCAAGCTTTACTGTTTAGACAATGTGGATTC
 
. : . : . : . : . : . :
rJMSF016L03- GATTTAAGAAAACAAGGGACAAGTTGGCGAAGTAATACAAACAGAGAGTATAATCAGTCG
                      ____________________________________________________________
consensus GATTTAAGAAAACAAGGGACAAGTTGGCGAAGTAATACAAACAGAGAGTATAATCAGTCG
 
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rJMSF016L03- ATACACATGACAGCCTCAAATACTTGCAATCCTCGTGCAAATCCAAGGTGAGGTGAAGAG
JMFN006C23+ TCCTCGTGCAAATCCAAGGTGAGGTGAAGAG
                      ____________________________________________________________
consensus ATACACATGACAGCCTCAAATACTTGCAATCCTCGTGCAAATCCAAGGTGAGGTGAAGAG
 
. : . : . : . : . : . :
rJMSF016L03- TTGCTATGGATCAAGTATTCCTTAATTTTTTGTCTTTCAAACGACGTTTTTCTTTCTTGA
JMSF016L03+ CGACGTTTTTCTTTCTTGA
JMFN006C23+ TTGCTATGGATCAAGTATTCCTTAATTTTTTGTCTTTCAAACGACGTTTTTCTTTCTTGA
                      ____________________________________________________________
consensus TTGCTATGGATCAAGTATTCCTTAATTTTTTGTCTTTCAAACGACGTTTTTCTTTCTTGA
 
. : . : . : . : . : . :
rJMSF016L03- AACTTGCAACACTTCGATCAAAGGTGCTCCTAGTGTGTTTGCACATAAACAACAGATCTT
JMSF016L03+ AACTTGCAACACTTCGATCAAAGGTGCTCCTAGTGTGTTTGCACATAAACAACAGATCTT
JMFN006C23+ AACTTGCAACACTTCGATCAAAGGTGCTCCTAGTGTGTTTGCACATAAACAACAGATCTT
                      ____________________________________________________________
consensus AACTTGCAACACTTCGATCAAAGGTGCTCCTAGTGTGTTTGCACATAAACAACAGATCTT
 
. : . : . : . : . : . :
rJMSF016L03- GCAATGAATCTTTCAACACTTCCCTAGCTGGATCCCCAGTAGTCTGAACTCTTATGTTCA
JMSF016L03+ GCAATGAATCTTTCAACACTTCCCTAGCTGGATCCCCAGTAGTCTGAACTCTTATGTTCA
JMFN006C23+ GCAATGAATCTTTCAACACTTCCCTAGCTGGATCCCCAGTAGTCTGAACTCTTATGTTCA
                      ____________________________________________________________
consensus GCAATGAATCTTTCAACACTTCCCTAGCTGGATCCCCAGTAGTCTGAACTCTTATGTTCA
 
. : . : . : . : . : . :
rJMSF016L03- CACGAACCTCAGAGGGATGTGGAATGCTATACCCAGAGACTACAACTCTGGGATCTTGGT
JMSF016L03+ CACGAACCTCAGAGGGATGTGGAATGCTATACCCAGAGACTACAACTCTGGGATCTTGGT
JMFN006C23+ CACGAACCTCAGAGGGATGTGGAATGCTATACCCAGAGACTACAACTCTGGGATCTTGGT
                      ____________________________________________________________
consensus CACGAACCTCAGAGGGATGTGGAATGCTATACCCAGAGACTACAACTCTGGGATCTTGGT
 
. : . : . : . : . : . :
rJMSF016L03- TAAGGGTGAATCTGAGAGCATTGGCGAGTGTATGATCCTCGTCTGTCAACGAGAAAGTAG
JMSF016L03+ TAAGGGTGAATCTGAGAGCATTGGCGAGTGTATGATCCTCGTCTGTCAACGAGAAAGTAG
JMFN006C23+ TAAGGGTGAATCTGAGAGCATTGGCGAGTGTATGATCCTCGTCTGTCAACGAGAAAGTAG
                      ____________________________________________________________
consensus TAAGGGTGAATCTGAGAGCATTGGCGAGTGTATGATCCTCGTCTGTCAACGAGAAAGTAG
 
. : . : . : . : . : . :
rJMSF016L03- CATTGGATTGATCATGGAGTGTACCGTGTTCCATTTATCAATCGCAACAAACTCTTCAGA
JMSF016L03+ CATTGGATTGATCATGGAGTGTACCGTGTTCCATTTATCAATCGCAACAAACTCTTCAGA
JMFN006C23+ CATTGGATTGATCATGGAGTGTACCGTGTTCCATTTAT-------------CTCTTCAGA
                      ____________________________________________________________
consensus CATTGGATTGATCATGGAGTGTACCGTGTTCCATTTATCAATCGCAACAAACTCTTCAGA
 
. : . : . : . : . : . :
rJMSF016L03- CGATTTGGACTTTCTAGCAGCAGCAGCAGTCCACGGTGGGTCACGGCTCCGGATGGCGGC
JMSF016L03+ CGATTTGGACTTTCTAGCAGCAGCAGCAGTCCACGGTGGGTCACGGCTCCGGATGGCGGC
JMFN006C23+ CGATTTGGACTTTCTAGCAGCAGCAGCAGTCCACGGTGGGTCACGGCTCCGGATGGCGGC
                      ____________________________________________________________
consensus CGATTTGGACTTTCTAGCAGCAGCAGCAGTCCACGGTGGGTCACGGCTCCGGATGGCGGC
 
. : . : . : . : . : . :
rJMSF016L03- GGAAGTGCTCGGCGATTGCGATGGCGGCTCTGCTCGGA
JMSF016L03+ GGAAGTGCTCGGCGATTGCGATGGCGGCTCTGCTCGGAGTCGGAGACGGCGTATTTTGGC
JMFN006C23+ GGAAGTGCTCGGCGATTGCGATGGCGGCTCTGCTCGGAGTCGGAGACGGCGTATTTTGGC
                      ____________________________________________________________
consensus GGAAGTGCTCGGCGATTGCGATGGCGGCTCTGCTCGGAGTCGGAGACGGCGTATTTTGGC
 
. : . : . : . : . : . :
JMSF016L03+ TGAGAAGAGAAAGTAGGAGGGATGCCGGTGCTGGGTGACGGTGATGTGCGGTGGTGCTGG
JMFN006C23+ TGAGAAGAGAAAGTAGGAGGGATGCCGGTGCTGGGTGACGGTGATGTGCGGTGGTGCTGG
                      ____________________________________________________________
consensus TGAGAAGAGAAAGTAGGAGGGATGCCGGTGCTGGGTGACGGTGATGTGCGGTGGTGCTGG
 
. : . : . : . : . : . :
JMSF016L03+ CCCCGGCCGTTTTTCCTTTCCGGCAACTCCGTTCGGCGTCTCTCTCTCTT
JMFN006C23+ CCCCGGCCGTTTTTCCTTTCCGGCAACTCCGTTCGGCGTCTCTCTCTCTTGCCTGACTGG
                      ____________________________________________________________
consensus CCCCGGCCGTTTTTCCTTTCCGGCAACTCCGTTCGGCGTCTCTCTCTCTTGCCTGACTGG