Contig 008894:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020I05Sequence567008894 (4)ref|XP_009354546.1|5e-27PREDICTED: probable NOT transcription complex subunit VIP2 isoform X5 [Pyrus x 598009855 (5)ref|XP_009795583.1|1e-102PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Nicotian
JMFF041L20Sequence655008894 (4)ref|XP_009354543.1|3e-48PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Pyrus x 535009855 (5)ref|XP_009607374.1|1e-86PREDICTED: probable NOT transcription complex subunit VIP2 [Nicotiana tomentosi
JMFF050E12Sequence615008894 (4)ref|XP_009354546.1|6e-25PREDICTED: probable NOT transcription complex subunit VIP2 isoform X5 [Pyrus x 622009855 (5)ref|XP_009607374.1|1e-92PREDICTED: probable NOT transcription complex subunit VIP2 [Nicotiana tomentosi
JMSF035N02Sequence663008894 (4)ref|XP_009354541.1|8e-54PREDICTED: probable NOT transcription complex subunit VIP2 isoform X1 [Pyrus x 648009855 (5)ref|XP_009607374.1|1e-95PREDICTED: probable NOT transcription complex subunit VIP2 [Nicotiana tomentosi

Alignment

This contig is upended


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JMSF035N02+                                                                   GNCC
                      ____________________________________________________________
consensus                                                                     GNCC
 
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JMSF035N02+           CGGCATTTCCCAAACCGGGGACACTCCAAGTCCTGGGACAGCACTTCGATTACCAATAGC
JMFF041L20+                                                        TCGATTACCAATAGC
                      ____________________________________________________________
consensus             CGGCATTTCCCAAACCGGGGACACTCCAAGTCCTGGGACAGCACTTCGATTACCAATAGC
 
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JMSF035N02+           AGCAGAAGTTGGAAGAATTCCAGGAATTGAACCACCGACTCCATTTGTGTTACTGTTATA
JMFF041L20+           AGCAGAAGTTGGAAGAATTCCAGGAATTGAACCACCGACTCCATTTGTGTTACTGTTATA
                      ____________________________________________________________
consensus             AGCAGAAGTTGGAAGAATTCCAGGAATTGAACCACCGACTCCATTTGTGTTACTGTTATA
 
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JMSF035N02+           CCCTGGGTTCCCTACAACACTTAAACCACCTCTACTCGTCATCCCTGTATGACCATGTGA
JMFF041L20+           CCCTGGGTTCCCTACAACACTTAAACCACCTCTACTCGTCATCCCTGTATGACCATGTGA
JMFF020I05+                                                     CCCTGTATGACCATGTGA
JMFF050E12+                                                        TGTATGACCATGTGA
                      ____________________________________________________________
consensus             CCCTGGGTTCCCTACAACACTTAAACCACCTCTACTCGTCATCCCTGTATGACCATGTGA
 
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JMSF035N02+           ACTGCCATGAGATATCTGGGAAAGAGCAACTGGAAGATTGTTTGATGTGAACCGACCACT
JMFF041L20+           ACTGCCATGAGATATCTGGGAAAGAGCAACTGGAAGATTGTTTGATGTGAACCGACCACT
JMFF020I05+           ACTGCCATGAGATATCTGGGAAAGAGCAACTGGAAGATTGTTTGATGTGAACCGACCACT
JMFF050E12+           NCTGCCATGAGATATCTGGGAAAGAGCAACTGGAAGATTGTTTGATGTGAACCGACCACT
                      ____________________________________________________________
consensus             ACTGCCATGAGATATCTGGGAAAGAGCAACTGGAAGATTGTTTGATGTGAACCGACCACT
 
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JMSF035N02+           AGAAAGGCTATTCCCGGACTGCTGAACACTGCTTGAAGGTATGTTTATACTTGTGTTCCT
JMFF041L20+           AGAAAGGCTATTCCCGGACTGCTGAACACTGCTTGAAGGTATGTTTATACTTGTGTTCCT
JMFF020I05+           AGAAAGGCTATTCCCGGACTGCTGAACACTGCTTGAAGGTATGTTTATACTTGTGTTCCT
JMFF050E12+           AGAAAGGCTATTCCCGGACTGCTGAACACTGCTGAANGGTATGTTTATACTTGTGTTCCT
                      ____________________________________________________________
consensus             AGAAAGGCTATTCCCGGACTGCTGAACACTGCTTGAAGGTATGTTTATACTTGTGTTCCT
 
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JMSF035N02+           CGATCCAAGTGTACCTGGCATACTGGGAACATTGAAATTCCCATGAATATTATGCAGCCC
JMFF041L20+           CGATCCAAGTGTACCTGGCATACTGGGAACATTGAAATTCCCATGAATATTATGCAGCCC
JMFF020I05+           CGATCCAAGTGTACCTGGCATACTGGGAACATTGAAATTCCCATGAATATTATGCAGCCC
JMFF050E12+           CGATCCAAGTGTACCTGGCATACTGGGAACATTGAAATTCCCATGAATATTATGCAGCCC
                      ____________________________________________________________
consensus             CGATCCAAGTGTACCTGGCATACTGGGAACATTGAAATTCCCATGAATATTATGCAGCCC
 
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JMSF035N02+           CTGCACACTTCCGGAGTGATGATAAACAGGAGATGCTGCACCAGACTGAGCTGAGAATGA
JMFF041L20+           CTGCACACTTCCGGAGTGATGATAAACAGGAGATGCTGCACCAGACTGAGCTGAGAATGA
JMFF020I05+           CTGCACACTTCCGGAGTGATGATAAACAGGAGATGCTGCACCAGACTGAGCTGAGAATGA
JMFF050E12+           CTGCACACTTCCGGAGTGATGATAAACAGGAGATGCTGCACCAGACTGAGCTGAGAATGA
                      ____________________________________________________________
consensus             CTGCACACTTCCGGAGTGATGATAAACAGGAGATGCTGCACCAGACTGAGCTGAGAATGA
 
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JMSF035N02+           TGTGTAGGAGCGCCCAGAGTTGTCGGTAAGATTTGAGGTTGATCCGTTCAAAGATGAATT
JMFF041L20+           TGTGTAGGAGCGCCCAGAGTTGTCGGTAAGATTTGAGGTTGATCCGTTCAAAGATGAATT
JMFF020I05+           TGTGTAGGAGCGCCCAGAGTTGTCGGTAAGATTTGAGGTTGATCCGTTCAAAGATGAATT
JMFF050E12+           TGTGTAGGAGCGCCCAGAGTTGTCGGTAAGATTTGAGGTTGATCCGTTCAAAGATGAATT
                      ____________________________________________________________
consensus             TGTGTAGGAGCGCCCAGAGTTGTCGGTAAGATTTGAGGTTGATCCGTTCAAAGATGAATT
 
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JMSF035N02+           AAGCAACCCTGACATTGTAGAAATGTCAAGAGGTCATGCAGAACTTTTTCCAGGTGGAGC
JMFF041L20+           AAGCAACCCTGACATTGTAGAAATGTCAAGAGGTCATGCAGAACTTTTTCCAGGTGGAGC
JMFF020I05+           AAGCAACCCTGACATTGTAGAAATGTCAAGAGGTCATGCAGAACTTTTTCCAGGTGGAGC
JMFF050E12+           AAGCAACCCTGACATTGTAGAAATGTCAAGAGGTCATGCAGAACTTTTTCCAGGTGGAGC
                      ____________________________________________________________
consensus             AAGCAACCCTGACATTGTAGAAATGTCAAGAGGTCATGCAGAACTTTTTCCAGGTGGAGC
 
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JMSF035N02+           GGCAAGTTTTCTTGCTTTTCTTCTGAAAGATTTTGGGATAAAATTTTGGAAGCTTTTCCG
JMFF041L20+           GGCAAGTTTTCTTGCTTTTCTTCTGAAAGATTTTGGGATAAAATTTTGGAAGCTTTTCCG
JMFF020I05+           GGCAAGTTTTCTTGCTTTTCTTCTGAAAGATTTTGGGATAAAATTTTGGAAGCTTTTCCG
JMFF050E12+           GGCAAGTTTTCTTGCTTTTCTTCTGAAAGATTTTGGGATAAAATTTTGGAAGCTTTTCCG
                      ____________________________________________________________
consensus             GGCAAGTTTTCTTGCTTTTCTTCTGAAAGATTTTGGGATAAAATTTTGGAAGCTTTTCCG
 
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JMSF035N02+           ACGTGAAATTACC                                               
JMFF041L20+           ACGTGAAATTACC                                               
JMFF020I05+           ACGTGAAATTACC                                               
JMFF050E12+           ACGTGAAATTACCTCCTCCTCGTCCTCCCCAAAGCTCAAACAAATTTGTGAAAATTTATA
                      ____________________________________________________________
consensus             ACGTGAAATTACCTCCTCCTCGTCCTCCCCAAAGCTCAAACAAATTTGTGAAAATTTATA
 
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JMFF050E12+           CATAGACATACACAGCAACACGCCGAATACGATACAGACGCAGATCTGTGAAAAGAAGAT
                      ____________________________________________________________
consensus             CATAGACATACACAGCAACACGCCGAATACGATACAGACGCAGATCTGTGAAAAGAAGAT
 
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JMFF050E12+           AGAAGACTCTACTGGTCGACGACAGAGACGAGCCAAGAGGATCGCGAAGACCAAAACCCC
                      ____________________________________________________________
consensus             AGAAGACTCTACTGGTCGACGACAGAGACGAGCCAAGAGGATCGCGAAGACCAAAACCCC