Contig 008888:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF048M03Sequence517008888 (2)ref|XP_008245681.1|3e-27PREDICTED: exopolygalacturonase clone GBGA483-like [Prunus mume]566011207 (2)ref|XP_006279044.1|1e-34hypothetical protein CARUB_v100165411mg, partial [Capsella rubella] gb|EOA11942.
JMFS031F11Sequence468008888 (2)ref|XP_008245681.1|1e-30PREDICTED: exopolygalacturonase clone GBGA483-like [Prunus mume]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS031F11+                                                             GCATTAAATT
                      ____________________________________________________________
consensus                                                               GCATTAAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS031F11+           GCAGATTAGCGGGAAGAGGACAGATATGGCCATTTTTGCCGCAGTCGGGTAGGTTCCAGG
JMFF048M03+                                  ATATGGCCATTTTTGCCGCAGTCGGGTAGGTTCCAGG
                      ____________________________________________________________
consensus             GCAGATTAGCGGGAAGAGGACAGATATGGCCATTTTTGCCGCAGTCGGGTAGGTTCCAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS031F11+           TGGTGGCGCCATTGCCGTCGAAAATGCCGCCGTTGATAGTCACTCCGATGACCTGGGAGA
JMFF048M03+           TGGTGGCGCCATNGCCGTCGAAAATGCCGCCGTTGATAGTCACTCCGATGACCTGGGAGA
                      ____________________________________________________________
consensus             TGGTGGCGCCATTGCCGTCGAAAATGCCGCCGTTGATAGTCACTCCGATGACCTGGGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS031F11+           AGGTGACCCATCCGCCGTGCCCTTTGAACGCAAAGGGATCCGGTAAAGCCAACAGATTCA
JMFF048M03+           AGGTGACCCATCCGCCGTGCCCTTTGAACGCAAAGGGATCCGGTAAAGCCAACAGATTCA
                      ____________________________________________________________
consensus             AGGTGACCCATCCGCCGTGCCCTTTGAACGCAAAGGGATCCGGTAAAGCCAACAGATTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS031F11+           TCTTTTGAGCATCAATGGTGATGGGACCTTTGCAAGGTCCCTGAAACCAAATCGGCCCGG
JMFF048M03+           TCTTTTGAGCATCAATGGTGATGGGACCTTTGCAAGGTCCCTGAAACCAAATCGGCCCGG
                      ____________________________________________________________
consensus             TCTTTTGAGCATCAATGGTGATGGGACCTTTGCAAGGTCCCTGAAACCAAATCGGCCCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS031F11+           CCATGAATTTGCCGGCCGCCGTAATCGTGTTCGCCCCCGGTGCTTTGCATGCCGCGCCCC
JMFF048M03+           CCATGAATTTGCCGGCCGCCGTAATCGTGTTCGCCCCCGGTGCTTTGCATGCCGCGCCCC
                      ____________________________________________________________
consensus             CCATGAATTTGCCGGCCGCCGTAATCGTGTTCGCCCCCGGTGCTTTGCATGCCGCGCCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS031F11+           ACGCACCCGTAAACGCCTTACTATCATCTGCTTTTCCATCGCCCTTGGCGCCAAATTTCA
JMFF048M03+           ACGCACCCGTAAACGCCTTACTATCATCTGCTTTTCCATCGCCCTTGGCGCCAAATTTCA
                      ____________________________________________________________
consensus             ACGCACCCGTAAACGCCTTACTATCATCTGCTTTTCCATCGCCCTTGGCGCCAAATTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS031F11+           TAACGTCGAAAAAGGCGGCATGCAAGCCTGTTACAAAAGACGCCAGCAAAATGCAGAACC
JMFF048M03+           TAACGTCGAAAAAGGCGGCATGCAAGCCTGTTACAAAAGACGCCAGCAAAATGCAGAACC
                      ____________________________________________________________
consensus             TAACGTCGAAAAAGGCGGCATGCAAGCCTGTTACAAAAGACGCCAGCAAAATGCAGAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS031F11+           ATGCAGCTTGAATCAGTATGGATTTCATGTCTTCTCTT                      
JMFF048M03+           ATGCAGCTTGAATCAGTATGGATTTCATGTCTTCTCTTTATTGGTTAGAAGTATTTCCCC
                      ____________________________________________________________
consensus             ATGCAGCTTGAATCAGTATGGATTTCATGTCTTCTCTTTATTGGTTAGAAGTATTTCCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF048M03+           TTTTGTTTTTGTTTTTTTTTTTTTTTGGGTTTTTACTGTTTTTTGTTTCTTCTATATTTT
                      ____________________________________________________________
consensus             TTTTGTTTTTGTTTTTTTTTTTTTTTGGGTTTTTACTGTTTTTTGTTTCTTCTATATTTT