Contig 008883:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035I08Sequence552008883 (2)ref|XP_011096548.1|2e-38PREDICTED: la-related protein 6A [Sesamum indicum]604006058 (4)ref|XP_004233116.1|7e-16PREDICTED: la-related protein 6A [Solanum lycopersicum]
JMFF047N10Sequence605008883 (2)ref|XP_011096548.1|7e-47PREDICTED: la-related protein 6A [Sesamum indicum]518006058 (4)ref|XP_009601092.1|6e-10PREDICTED: la-related protein 6A isoform X2 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF047N10+ GGTAA
                      ____________________________________________________________
consensus GGTAA
 
. : . : . : . : . : . :
JMFF035I08+ TCAATGTATGGGAGAGGATT
JMFF047N10+ GTTTTCCACCAATACAGTGCATAGCTGAGGATCCCTGGCCTCAATGTATGGGAGAGGATN
                      ____________________________________________________________
consensus GTTTTCCACCAATACAGTGCATAGCTGAGGATCCCTGGCCTCAATGTATGGGAGAGGATT
 
. : . : . : . : . : . :
JMFF035I08+ TAGTCGCTTCACCCTTTTCCCATCAGAACTGACAACCAGAAGAGAGGAGTCCTTGAGTGC
JMFF047N10+ TAGTCGCTTCACCCTTTTCCCATCAGAACTGACAACCAGAAGAGAGGAGTCCTTGAGTGC
                      ____________________________________________________________
consensus TAGTCGCTTCACCCTTTTCCCATCAGAACTGACAACCAGAAGAGAGGAGTCCTTGAGTGC
 
. : . : . : . : . : . :
JMFF035I08+ AGTCACAATCAGAGGTATCTCCCTGGTCAGCTTCTTCAGTTTTCTAAATGAAGCAATGAC
JMFF047N10+ AGTCACAATCAGAGGTATCTCCCTGGTCAGCTTCTTCAGTTTTCTAAATGAAGCAATGAC
                      ____________________________________________________________
consensus AGTCACAATCAGAGGTATCTCCCTGGTCAGCTTCTTCAGTTTTCTAAATGAAGCAATGAC
 
. : . : . : . : . : . :
JMFF035I08+ TTTAAGAGGAACATATCCTTCCTCATTCTTGGTCACATATTTCAGAAGAAACTTATCCGT
JMFF047N10+ TTTAAGAGGAACATATCCTTCCTCATTCTTGGTCACATATTTCAGAAGAAACTTATCCGT
                      ____________________________________________________________
consensus TTTAAGAGGAACATATCCTTCCTCATTCTTGGTCACATATTTCAGAAGAAACTTATCCGT
 
. : . : . : . : . : . :
JMFF035I08+ TGGCAAATTTTCATCACTGAAGTAATATTCCACCTGCTTGATAATCTTGAGGCGAAGATC
JMFF047N10+ TGGCAAATTTTCATCACTGAAGTAATATTCCACCTGCTTGATAATCTTGAGGCGAAGATC
                      ____________________________________________________________
consensus TGGCAAATTTTCATCACTGAAGTAATATTCCACCTGCTTGATAATCTTGAGGCGAAGATC
 
. : . : . : . : . : . :
JMFF035I08+ ATCGGTGAGAGGAGCGATGGAGGAGGGGTGGGGTTGATCGGAGTGCTGAGGAAGATCCTC
JMFF047N10+ ATCGGTGAGAGGAGCGATGGAGGAGGGGTGGGGTTGATCGGAGTGCTGAGGAAGATCCTC
                      ____________________________________________________________
consensus ATCGGTGAGAGGAGCGATGGAGGAGGGGTGGGGTTGATCGGAGTGCTGAGGAAGATCCTC
 
. : . : . : . : . : . :
JMFF035I08+ GTGGAAGTCAGGGGATCCGACGGGAGAGAAATCAGGATGGTGATCGTCATCTTCGTCGTC
JMFF047N10+ GTGGAAGTCAGGGGATCCGACGGGAGAGAAATCAGGATGGTGATCGTCATCTTCGTCGTC
                      ____________________________________________________________
consensus GTGGAAGTCAGGGGATCCGACGGGAGAGAAATCAGGATGGTGATCGTCATCTTCGTCGTC
 
. : . : . : . : . : . :
JMFF035I08+ AAGCGGTGGAGACGAAGAGGTGGCGGCGACGGTGTGGGAGGTGATGGGGATGAGGACTCC
JMFF047N10+ AAGCGGTGGAGACGAAGAGGTGGCGGCGACGGTGTGGGAGGTGATGGGGATGAGGACTCC
                      ____________________________________________________________
consensus AAGCGGTGGAGACGAAGAGGTGGCGGCGACGGTGTGGGAGGTGATGGGGATGAGGACTCC
 
. : . : . : . : . : . :
JMFF035I08+ CCTGGAGCCGGATCCGGGTTCGGGTTCGGGTTCCATTTCCAGAGAGAGGAGAAGAGGGGT
JMFF047N10+ CCTGGAGCCGGATCCGGGTTCGGGTTCGGGTTCCATTTCCAGAGAGAGGAGAAGAGGGGT
                      ____________________________________________________________
consensus CCTGGAGCCGGATCCGGGTTCGGGTTCGGGTTCCATTTCCAGAGAGAGGAGAAGAGGGGT
 
. : . : . : . : . : . :
JMFF035I08+ GTCTTTCTTTCTTTCCGCTTCGGCTACTTTTCGCTCTTCATCGACTTCCCCT
JMFF047N10+ GTCTTTCTTTCTTTCCGCTTCGGCTACTTTTCGCTCTTCATCGACTTCCCCTGATCTCCC
                      ____________________________________________________________
consensus GTCTTTCTTTCTTTCCGCTTCGGCTACTTTTCGCTCTTCATCGACTTCCCCTGATCTCCC