Contig 008867:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044J17Sequence651008867 (4)sp|Q01544.1|HSP21_IPONI3e-77RecName: Full=17.2 kDa class II heat shock protein [Ipomoea nil] gb|AAB39335.1| 588008867 (4)sp|Q01544.1|HSP21_IPONI3e-61RecName: Full=17.2 kDa class II heat shock protein [Ipomoea nil] gb|AAB39335.1|
JMFF044O04Sequence643008867 (4)sp|Q01544.1|HSP21_IPONI3e-77RecName: Full=17.2 kDa class II heat shock protein [Ipomoea nil] gb|AAB39335.1| 581008867 (4)sp|Q01544.1|HSP21_IPONI7e-60RecName: Full=17.2 kDa class II heat shock protein [Ipomoea nil] gb|AAB39335.1|

Alignment

This contig is upended


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rJMFF044O04-                                                                  AGAG
rJMFF044J17-                                                                  AGAG
                      ____________________________________________________________
consensus                                                                     AGAG
 
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rJMFF044O04-          CATGAGAGTTAAACTTGTGCATTCATTTTGTGTCACCCGGTCTTAAACATTACATAGTAA
rJMFF044J17-          CATGAGAGTTAAACTTGTGCATTCATTTTGTGTCACACGGTCTTAAACATTACATAGTAA
                      ____________________________________________________________
consensus             CATGAGAGTTAAACTTGTGCATTCATTTTGTGTCACCCGGTCTTAAACATTACATAGTAA
 
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rJMFF044O04-          ATGATAATTTGAAATTAAAACCAACAGAAACTCCTTCCAACATACATACTGAGTCATCAC
rJMFF044J17-          ATGATAATTTGAAATTAAAACCAACAGAAACTCCTTCCAACATACATACTGAGTCATCAC
JMFF044O04+                            AAACCAACAGAAACTCTTTCCAACATACATACTGAGTCATCAC
JMFF044J17+                    TGAAATTAAAACCAACAGAAACTCCTTCCAACATACATACTGAGTCATCAC
                      ____________________________________________________________
consensus             ATGATAATTTGAAATTAAAACCAACAGAAACTCCTTCCAACATACATACTGAGTCATCAC
 
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rJMFF044O04-          ATTTGAAGAGAAATTATATTATTCATAACGCAAAGGAAACAGAGCAGTCATATGCTAATC
rJMFF044J17-          ATTTGAAGAGAAATTATATTATTCATAACGCAAAGGAAACAGAGCAGTCATATGCTAATC
JMFF044O04+           ATTTGAAGAGAAATTATATTATTCATAACGCAAAGGAAACAGAGCAGTCATATGCTAATC
JMFF044J17+           ATTTGAAGAGAAATTATATTATTCATAACGCAAAGGAAACAGAGCAGTCATATGCTAATC
                      ____________________________________________________________
consensus             ATTTGAAGAGAAATTATATTATTCATAACGCAAAGGAAACAGAGCAGTCATATGCTAATC
 
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rJMFF044O04-          TCAAGCAATTTTGACCTCAATGGTCCTTGGCTTCTTCGGCTCCGGCGGCGGCAGCTTCTC
rJMFF044J17-          TCAAGCAATTTTGACCTCAATGGTCCTTGGCTTCTTCGGCTCCGGCGGCGGCAGCTTCTC
JMFF044O04+           TCAAGCAATTTTGACCTCAATGGTCCTTGGCTTCTTCGGCTCCGGCGGCGGCAGCTTCTC
JMFF044J17+           TCAAGCAATTTTGACCTCAATGGTCCTTGGCTTCTTCGGCTCCGGCGGCGGCAGCTTCTC
                      ____________________________________________________________
consensus             TCAAGCAATTTTGACCTCAATGGTCCTTGGCTTCTTCGGCTCCGGCGGCGGCAGCTTCTC
 
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rJMFF044O04-          CACCGTCACCGTCAACACCCCATCCTGGCAAACCGCCGTGATCTTCTCCTTATTTGCATT
rJMFF044J17-          CACCGTCACCGTCAACACCCCATCCTGGCAAACCGCCGTGATCTTCTCCTTATTTGCATT
JMFF044O04+           CACCGTCACCGTCAACACCCCATCCTGGCAAACCGCCGTGATCTTCTCCTTATTTGCATT
JMFF044J17+           CACCGTCACCGTCAACACCCCATCCTGGCAAACCGCCGTGATCTTCTCCTTATTTGCATT
                      ____________________________________________________________
consensus             CACCGTCACCGTCAACACCCCATCCTGGCAAACCGCCGTGATCTTCTCCTTATTTGCATT
 
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rJMFF044O04-          TTCCGGCAGCACAAACTTCCTCATTAACTTCCCCACCCTCCTTTCCATCCTCACATACTT
rJMFF044J17-          TTCCGGCAGCACAAACTTCCTCATTAACTTCCCCACCCTCCTTTCCATCCTCACATACTT
JMFF044O04+           TTCCGGCAGCACAAACTTCCTCATTAACTTCCCCACCCTCCTTTCCATCCTCACATACTT
JMFF044J17+           TTCCGGCAGCACAAACTTCCTCATTAACTTCCCCACCCTCCTTTCCATCCTCACATACTT
                      ____________________________________________________________
consensus             TTCCGGCAGCACAAACTTCCTCATTAACTTCCCCACCCTCCTTTCCATCCTCACATACTT
 
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rJMFF044O04-          CGCCCCCTCCTTCTCCTCCGCCTCACGCTTCCGCTCCCCGCTAATACTCAACACGTTTTC
rJMFF044J17-          CGCCCCCTCCTTCTCCTCCGCCTCACGCTTCCGCTCCCCGCTAATACTCAACACGTTTTC
JMFF044O04+           CGCCCCCTCCTTCTCCTCCGCCTCACGCTTCCGCTCCCCGCTAATACTCAACACGTTTTC
JMFF044J17+           CGCCCCCTCCTTCTCCTCCGCCTCACGCTTCCGCTCCCCGCTAATACTCAACACGTTTTC
                      ____________________________________________________________
consensus             CGCCCCCTCCTTCTCCTCCGCCTCACGCTTCCGCTCCCCGCTAATACTCAACACGTTTTC
 
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rJMFF044O04-          GTCGGCGATCTGAACCTTGATGTCGCCGGACTTCAGCCCCGGCATGTCTATGATGAAGAC
rJMFF044J17-          GTCGGCGATCTGAACCTTGATGTCGCCGGACTTCAGCCCCGGCATGTCTATGATGAAGAC
JMFF044O04+           GTCGGCGATCTGAACCTTGATGTCGCCGGACTTCAGCCCCGGCATGTCTATGATGAAGAC
JMFF044J17+           GTCGGCGATCTGAACCTTGATGTCGCCGGACTTCAGCCCCGGCATGTCTATGATGAAGAC
                      ____________________________________________________________
consensus             GTCGGCGATCTGAACCTTGATGTCGCCGGACTTCAGCCCCGGCATGTCTATGATGAAGAC
 
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rJMFF044O04-          GTACGAGTTTGGGTACTCCTTCACGTCCGCCGGGGTGGCTGCCATTGCCTTGGCGTCGAG
rJMFF044J17-          GTACGAGTTTGGGTACTCCTTCACGTCCGCCGGGGTGGCTGCCATTGCCTTGGCGTCGAG
JMFF044O04+           GTACGAGTTTGGGTACTCCTTCACGTCCGCCGGGGTGGCTGCCATTGCCTTGGCGTCGAG
JMFF044J17+           GTACGAGTTTGGGTACTCCTTCACGTCCGCCGGGGTGGCTGCCATTGCCTTGGCGTCGAG
                      ____________________________________________________________
consensus             GTACGAGTTTGGGTACTCCTTCACGTCCGCCGGGGTGGCTGCCATTGCCTTGGCGTCGAG
 
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rJMFF044O04-          CATAAACGTCCGAGAAGGCGCGCTGCTGTTGGATGAC                       
rJMFF044J17-          CATAAACGTCCGAGAAGGCGCGCTGCTGTTGGATGAC                       
JMFF044O04+           CATAAACGTCCGAGAAGGCGCGCTGCTGTTGGATGACTTGTCGTCGCCGGCGTAGTCCAC
JMFF044J17+           CATAAACGTCCGAGAAGGCGCGCTGCTGTTGGATGACTTGTCGTCGCCGGCGTAGTCCAC
                      ____________________________________________________________
consensus             CATAAACGTCCGAGAAGGCGCGCTGCTGTTGGATGACTTGTCGTCGCCGGCGTAGTCCAC
 
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JMFF044O04+           GATGTGGTGGAGCGGGTGGAAAAGCGGGTGATCGAAACCCATCAACCTCAAATCCATTTC
JMFF044J17+           GATGTGGTGGAGCGGGTGGAAAAGCGGGTGATCGAAACCCATCAACCTCAAATCCATTTC
                      ____________________________________________________________
consensus             GATGTGGTGGAGCGGGTGGAAAAGCGGGTGATCGAAACCCATCAACCTCAAATCCATTTC
 
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JMFF044O04+           TTCAACAGTGTGTTTTGTGGAATTTCGCTAATTGAAATTAAAAATGTTTTCTGACGTGAT
JMFF044J17+           TTCAACAGTGTGTTTTGTGGAATTTCGCTAATTGAAATTAAAAATGTTTTCTGACGTGAT
                      ____________________________________________________________
consensus             TTCAACAGTGTGTTTTGTGGAATTTCGCTAATTGAAATTAAAAATGTTTTCTGACGTGAT