Contig 008828:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035I09Sequence573008828 (5)gb|AAP42502.1|2e-117peroxiredoxin [Ipomoea batatas]697008828 (5)gb|AAP42502.1|5e-106peroxiredoxin [Ipomoea batatas]
JMFN007L03Sequence630008828 (5)gb|AAP42502.1|8e-133peroxiredoxin [Ipomoea batatas]
JMSF021B12Sequence692008828 (5)gb|AAP42502.1|3e-132peroxiredoxin [Ipomoea batatas]787008828 (5)gb|AAP42502.1|3e-126peroxiredoxin [Ipomoea batatas]

Alignment

This contig is upended


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rJMFF035I09-                                                                TTTTTT
                      ____________________________________________________________
consensus                                                                   TTTTTT
 
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rJMFF035I09-          TCTTCATATAAATGGTAATTATTTGCAACAAAGTTGGGAACCCTATAGGCTTTAGCAGAG
rJMSF021B12-                                     ACAAAGTTGGGAACCCTATAGGCTTTAGCAGAG
                      ____________________________________________________________
consensus             TCTTCATATAAATGGTAATTATTTGCAACAAAGTTGGGAACCCTATAGGCTTTAGCAGAG
 
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rJMFF035I09-          CATACCAAAGCATTGCAATTACAAAGCCAAGGGACAGTTATGAATTTGGGAGAAGCACAC
rJMSF021B12-          CATACCAAAGCATTGCAATTACAAAGCCAAGGGACAGTTATGAATTTGGGAGAAGCACAC
                      ____________________________________________________________
consensus             CATACCAAAGCATTGCAATTACAAAGCCAAGGGACAGTTATGAATTTGGGAGAAGCACAC
 
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rJMFF035I09-          CCCCAGAAACCAATAGACTAGTATTTGCCCTTCCGTACGACTAGACAAAAGCTCATTATT
rJMSF021B12-          CCCCAGAAACCAATAGACTAGTATTTGCCCTTCCGTACGACTAGACAAAAGCTCATTATT
JMSF021B12+                                      CCCTTCCGTACGACTAGACAAAAGCTCATTATT
                      ____________________________________________________________
consensus             CCCCAGAAACCAATAGACTAGTATTTGCCCTTCCGTACGACTAGACAAAAGCTCATTATT
 
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rJMFF035I09-          AATTAAAACTGCAAATAAAACAGACTCTAGATCTGTCCCAAGATGACATCGCCACCAGAT
rJMSF021B12-          AATTAAAACTGCAAATAAAACAGACTCTAGATCTGTCCCAAGATGACATCGCCACCAGAT
JMFN007L03+                       AAATAAAACAGACTCTAGATCTGTCCCAAGATGACATCGCCACCAGAT
JMSF021B12+           AATTAAAACTGCAAATAAAACAGACTCTAGATCTGTCCCAAGATGACATCGCCACCAGAT
                      ____________________________________________________________
consensus             AATTAAAACTGCAAATAAAACAGACTCTAGATCTGTCCCAAGATGACATCGCCACCAGAT
 
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rJMFF035I09-          ACCTTGAAATCAGATGGAGCCTGTTCAACATTGAGAACCTTGACCTGTCCATCAACTATG
rJMSF021B12-          ACCTTGAAATCAGATGGAGCCTGTTCAACATTGAGAACCTTGACCTGTCCATCAACTATG
JMFN007L03+           ACCTTGAAATCAGATGGAGCCTGTTCAACATTGAGAACCTTGACCTGTCCATCAACTATG
JMSF021B12+           ACCTTGAAATCAGATGGAGCCTGTTCAACATTGAGAACCTTGACCTGTCCATCAACTATG
JMFF035I09+                                      ACATTGAGAACCTTGACCTGTCCATCAACTATG
                      ____________________________________________________________
consensus             ACCTTGAAATCAGATGGAGCCTGTTCAACATTGAGAACCTTGACCTGTCCATCAACTATG
 
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rJMFF035I09-          TATGCAGACCACCTATGGGATCGTATTCCGAGCAAAGCACCAGAGAGATCAACTGTTAAG
rJMSF021B12-          TATGCAGACCACCTATGGGATCGTATTCCGAGCAAAGCACCAGAGAGATCAACTGTTAAG
JMFN007L03+           TATGCAGACCACCTATGGGATCGTATTCCGAGCAAAGCACCAGAGAGATCAACTGTTAAG
JMSF021B12+           TATGCAGACCACCTATGGGATCGTATTCCGAGCAAAGCACCAGAGAGATCAACTGTTAAG
JMFF035I09+           TATGCAGACCACCTATGGGATCGTATTCCGAGCAAAGCACCAGAGAGATCAACTGTTAAG
                      ____________________________________________________________
consensus             TATGCAGACCACCTATGGGATCGTATTCCGAGCAAAGCACCAGAGAGATCAACTGTTAAG
 
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rJMFF035I09-          TCCAAGCTCTTGTGAAAACTCCCATCAAAATCACCATAGAACTCAATAGCATCTTTAGCT
rJMSF021B12-          TCCAAGCTCTTGTGAAAACTCCCATCAAAATCACCATAGAACTCAATAGCATCTTTAGCT
JMFN007L03+           TCCAAGCTCTTGTGAAAACTCCCATCAAAATCACCATAGAACTCAATAGCATCTTTAGCT
JMSF021B12+           TCCAAGCTCTTGTGAAAACTCCCATCAAAATCACCATAGAACTCAATAGCATCTTTAGCT
JMFF035I09+           TCCAAGCTCTTGTGAAAACTCCCATCAAAATCACCATAGAACTCAATAGCATCTTTAGCT
                      ____________________________________________________________
consensus             TCCAAGCTCTTGTGAAAACTCCCATCAAAATCACCATAGAACTCAATAGCATCTTTAGCT
 
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rJMFF035I09-          TGAAGCTTCTCTGCCCAGCCATTCATTGTATATGGGTCATTGACAGCTACACAGATCACC
rJMSF021B12-          TGAAGCTTCTCTGCCCAGCCATTCATTGTATATGGGTCATTGACAGCTACACAGATCACC
JMFN007L03+           TGAAGCTTCTCTGCCCAGCCATTCATTGTATATGGGTCATTGACAGCTACACAGATCACC
JMSF021B12+           TGAAGCTTCTCTGCCCAGCCATTCATTGTATATGGGTCATTGACAGCTACACAGATCACC
JMFF035I09+           TGAAGCTTCTCTGCCCAGCCATTCATTGTATATGGGTCATTGACAGCTACACAGATCACC
                      ____________________________________________________________
consensus             TGAAGCTTCTCTGCCCAGCCATTCATTGTATATGGGTCATTGACAGCTACACAGATCACC
 
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rJMFF035I09-          GAGTCAATTCCTTTGGCCTTGAACTTATCAATGTTAGTCTTGTAGCTAGGCACATGTTGG
rJMSF021B12-          GAGTCAATTCCTTTGGCCTTGAACTTATCAATGTTAGTCTTGTAGCTAGGCACATGTTGG
JMFN007L03+           GAGTCAATTCCTTTGGCCTTGAACTTATCAATGTTAGTCTTGTAGCTAGGCACATGTTGG
JMSF021B12+           GAGTCAATTCCTTTGGCCTTGAACTTATCAATGTTAGTCTTGTAGCTAGGCACATGTTGG
JMFF035I09+           GAGTCAATTCCTTTGGCCTTGAACTTATCAATGTTAGTCTTGTAGCTAGGCACATGTTGG
                      ____________________________________________________________
consensus             GAGTCAATTCCTTTGGCCTTGAACTTATCAATGTTAGTCTTGTAGCTAGGCACATGTTGG
 
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rJMFF035I09-          GCTGAACAAACCCCGGTGTATGCACCCGGAAGTCCAAAGATAACAACATTTTTGCCCTTG
rJMSF021B12-          GCTGAACAAACCCCGGTGTATGCACCCGGAAGTCCAAAGATAACAACATTTTTGCCCTTG
JMFN007L03+           GCTGAACAAACCCCGGTGTATGCACCCGGAAGTCCAAAGATAACAACATTTTTGCCCTTG
JMSF021B12+           GCTGAACAAACCCCGGTGTATGCACCCGGAAGTCCAAAGATAACAACATTTTTGCCCTTG
JMFF035I09+           GCTGAACAAACCCCGGTGTATGCACCCGGAAGTCCAAAGATAACAACATTTTTGCCCTTG
                      ____________________________________________________________
consensus             GCTGAACAAACCCCGGTGTATGCACCCGGAAGTCCAAAGATAACAACATTTTTGCCCTTG
 
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rJMFF035I09-          AAGATGTCTTTGAGAGGGGTAGTGGAGAATTTGGAGGAAACACCTTCGTCCCAAGAGCGA
rJMSF021B12-          AAGATGTCTTTGAGAGGGGTAGTGGAGAATTTGGAGGAAACACCTTCGTCCCAAGAGCGA
JMFN007L03+           AAGATGTCTTTGAGAGGGGTAGTGGAGAATTTGGAGGAAACACCTTCGTCCCAAGAGCGA
JMSF021B12+           AAGATGTCTTTGAGAGGGGTAGTGGAGAATTTGGAGGAAACACCTTCGTCCCAAGAGCGA
JMFF035I09+           AAGATGTCTTTGAGAGGGGTAGTGGAGAATTTGGAGGAAACACCTTCGTCCCAAGAGCGA
                      ____________________________________________________________
consensus             AAGATGTCTTTGAGAGGGGTAGTGGAGAATTTGGAGGAAACACCTTCGTCCCAAGAGCGA
 
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rJMFF035I09-          GCTTTCTGGAGAGAGGCATTGGG                                     
rJMSF021B12-          GCTTTCTGGAGAGAGGCATTGGGTGCGGCCGAGATGAGGTCCGTACCCACTGCAACCGAT
JMFN007L03+           GCTTTCTGGAGAGAGGCATTGGGTGCGGCCGAGATGAGGTCCGTACCCACTGCAACCGAT
JMSF021B12+           GCTTTCTGGAGAGAGGCATTGGGTGCGGCCGAGATGAGGTCCGTACCCACTGCAACCGAT
JMFF035I09+           GCTTTCTGGAGAGAGGCATTGGGTGCGGCCGAGATGAGGTCCGTACCCACTGCAACCGAT
                      ____________________________________________________________
consensus             GCTTTCTGGAGAGAGGCATTGGGTGCGGCCGAGATGAGGTCCGTACCCACTGCAACCGAT
 
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rJMSF021B12-          GCGTATGACCTCAACCTGTTGACCATTGACTTCACCATCGTCGTCCG-TTCAGCATAGCC
JMFN007L03+           GCGTATGACCTCAACCTGTTGACCATTGACTTCACCATCGTCGTCCGTTTCAGCATAGCC
JMSF021B12+           GCGTATGACCTCAACCTGTTGACCATTGACTTCACCATCGTCGTCCGTTTCAGCATAGCC
JMFF035I09+           GCGTATGACCTCAACCTGTTGACCATTGACTTCACCATCGTCGTCCGTTTCAGCATAGCC
                      ____________________________________________________________
consensus             GCGTATGACCTCAACCTGTTGACCATTGACTTCACCATCGTCGTCCGTTTCAGCATAGCC
 
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rJMSF021B12-          GTCGCCATGGTTAATGCTCTGCTTCGA                                 
JMFN007L03+           GTCGCCATGGTTAATGCTCTGCTTCGA                                 
JMSF021B12+           GTCGCCATGGTTAATGCTCTGCTTCGATCAACAGTTAATGGTGTGAACTATAGAGTAT  
JMFF035I09+           GTCGCCATGGTTAATGCTCTGCTTCGATCAACAGTTAATGGTGTGAACTATAGAGTATAT
                      ____________________________________________________________
consensus             GTCGCCATGGTTAATGCTCTGCTTCGATCAACAGTTAATGGTGTGAACTATAGAGTATAT