| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF027J23 | Sequence | 532 | 008806 (7) | ref|XP_009791887.1| | 3e-50 | PREDICTED: histone deacetylase HDT1-like isoform X1 [Nicotiana sylvestris] | 757 | 008806 (7) | ref|XP_009612087.1| | 1e-33 | PREDICTED: histone deacetylase HDT1-like [Nicotiana tomentosiformis] |
| JMFF029J24 | Sequence | 557 | 008806 (7) | ref|XP_009791887.1| | 4e-50 | PREDICTED: histone deacetylase HDT1-like isoform X1 [Nicotiana sylvestris] | 735 | 008806 (7) | ref|XP_009612087.1| | 2e-35 | PREDICTED: histone deacetylase HDT1-like [Nicotiana tomentosiformis] |
| JMFN030H12 | Sequence | 164 | 008806 (7) | ||||||||
| JMSF045F09 | Sequence | 664 | 008806 (7) | ref|XP_009764196.1| | 2e-53 | PREDICTED: histone deacetylase HDT1-like [Nicotiana sylvestris] gb|ACZ54946.1| t | 822 | 008806 (7) | ref|XP_009612087.1| | 2e-38 | PREDICTED: histone deacetylase HDT1-like [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMFF029J24- AGTTCTTTTTCTTTGGTAAAATTCATA
____________________________________________________________
consensus AGTTCTTTTTCTTTGGTAAAATTCATA
. : . : . : . : . : . :
rJMFF029J24- ATAATATCCAATCACAATAAAACACAAAATTAAAGTTCGATTTGAAAGTTGCAATGCCAA
rJMFF027J23- AATAAAACACAAAATTAAAGTTCGATTTGAAAGTTGCAATGCCAA
rJMSF045F09- GTTCGATTTGAAAGTTGCAATGCCAA
____________________________________________________________
consensus ATAATATCCAATCACAATAAAACACAAAATTAAAGTTCGATTTGAAAGTTGCAATGCCAA
. : . : . : . : . : . :
rJMFF029J24- AACCAGCCCCGGTCCTGCCTGACTCATTCAGTAAAAATACGACTCTGAAACCAACCAAAA
rJMFF027J23- AACCAGCCCCGGTCCTGCCTGACTCATTCAGTAAAAATACGACTCTGAAACCAACCAAAA
rJMSF045F09- AACCAGCCCCGGTCCTGCCTGACTCATTCAGTAAAAATACGACTCTGAAACCAACCAAAA
____________________________________________________________
consensus AACCAGCCCCGGTCCTGCCTGACTCATTCAGTAAAAATACGACTCTGAAACCAACCAAAA
. : . : . : . : . : . :
rJMFF029J24- CATACTATAACCCGCCTTAACATTAGATGAACCACAAAACAAAACCCCAAACAGTGAACC
rJMFF027J23- CATACTATAACCCGCCTTAACATTAGATGAACCACAAAACAAAACCCCAAACAGTGAACC
rJMSF045F09- CATACTATAACCCGCCTTAACATTAGATGAACCACAAAACAAAACCCCAAACAGTGAACC
____________________________________________________________
consensus CATACTATAACCCGCCTTAACATTAGATGAACCACAAAACAAAACCCCAAACAGTGAACC
. : . : . : . : . : . :
rJMFF029J24- AAGGCAGGCTAGGCTAGTAGGCTCTAACTCCTATTTCTCCCCCCGGGCACTCAATTTTAC
rJMFF027J23- AAGGCAGGCTAGGCTAGTAGGCTCTAACTCCTATTTCTCCCCCCGGGCACTCAATTTTAC
rJMSF045F09- AAGGCAGGCTAGGCTAGTAGGCTCTAACTCCTATTTCTCCCCCCGGGCACTCAATTTTAC
____________________________________________________________
consensus AAGGCAGGCTAGGCTAGTAGGCTCTAACTCCTATTTCTCCCCCCGGGCACTCAATTTTAC
. : . : . : . : . : . :
rJMFF029J24- TTTCCAGCACCATGTTTAGCTTTTGAGTGAGAATCCAAAGCACTTTCAGAACCAAAACTC
rJMFF027J23- TTTCCAGCACCATGTTTAGCTTTTGAGTGAGAATCCAAAGCACTTTCAGAACCAAAACTC
rJMSF045F09- TTTCCAGCACCATGTTTAGCTTTTGAGTGAGAATCCAAAGCACTTTCAGAACCAAAACTC
____________________________________________________________
consensus TTTCCAGCACCATGTTTAGCTTTTGAGTGAGAATCCAAAGCACTTTCAGAACCAAAACTC
. : . : . : . : . : . :
rJMFF029J24- CTATTGCATGGTTTGCAGAGGTGAGAACCTCCCGATTTTGGAGTCTGTTGCTTTGCAGCC
rJMFF027J23- CTATTGTATGGTTTGCAGAGGTGAGAACCTCCCGATTTTGGAGTCTGTTGCTTTGCAGCC
rJMSF045F09- CTATTGCATGGTTTGCAGAGGTGAGAACCTCCCGATTTTGGAGTCTGTTGCTTTGCAGCC
____________________________________________________________
consensus CTATTGCATGGTTTGCAGAGGTGAGAACCTCCCGATTTTGGAGTCTGTTGCTTTGCAGCC
. : . : . : . : . : . :
rJMFF029J24- TTGTTATTAGGAGTCTTCCCAGCAGCTTTCTTTGAAGGATGTGGGGTAGCTACATGTTCA
rJMFF027J23- TTGTTATTAGGAGTCTTCCCAGCAGCTTTCTTTGAAGGATGTGGGGTAGCTACATGTTCA
rJMSF045F09- TTGTTATTAGGAGTCTTCCCAGCAGCTTTCTTTGAAGGATGTGGGGTAGCTACATGTTCA
____________________________________________________________
consensus TTGTTATTAGGAGTCTTCCCAGCAGCTTTCTTTGAAGGATGTGGGGTAGCTACATGTTCA
. : . : . : . : . : . :
rJMFF029J24- CTGCCCTTCTTTCCATCAGTTTTCTGAGGAGTTGCCATTTTCACCTTTTTCTCAGGTACA
rJMFF027J23- CTGCCCTTCTTTCCATCAGTTTTCTGAGGAGTTGCCATTTTCACCTTTTTCTCAGGTACA
rJMSF045F09- CTGCCCTTCTTTCCATCAGTTTTCTGAGGAGTTGCCATTTTCACCTTTTTCTCAGGTACA
____________________________________________________________
consensus CTGCCCTTCTTTCCATCAGTTTTCTGAGGAGTTGCCATTTTCACCTTTTTCTCAGGTACA
. : . : . : . : . : . :
rJMFF029J24- GGTGTCTTCTTGGATGATTCTGAAGGCCTCTTCTTGCCAGATTCAACCTTCTTTGGAGTC
rJMFF027J23- GGTGTCTTCTTGGATGATTCTGAAGGCCTCTTCTTGCCAGATTCAACCTTCTTTGGAGTC
rJMSF045F09- GGTGTCTTCTTGGATGATTCTGAAGGCCTCTTCTTGCCAGATTCAACCTTCTTTGGAGTC
____________________________________________________________
consensus GGTGTCTTCTTGGATGATTCTGAAGGCCTCTTCTTGCCAGATTCAACCTTCTTTGGAGTC
. : . : . : . : . : . :
rJMFF029J24- TCCTCACTCTCATCCTCAGAATCTTCATCCTCAGAGTCACTCACATCTTCATCCTCCCCA
rJMFF027J23- TCCTCACTCTCATCCTCAGAATCTTCATCCTCAGAGTCACTCACATCTTCATCCTCCCCA
rJMSF045F09- TCCTCACTCTCATCCTCAGAATCTTCATCCTCAGAGTCACTCACATCTTCATCCTCCCCA
JMSF045F09+ TCCTCAGAGTCACTCACATNTTCATCCTCCCCA
____________________________________________________________
consensus TCCTCACTCTCATCCTCAGAATCTTCATCCTCAGAGTCACTCACATCTTCATCCTCCCCA
. : . : . : . : . : . :
rJMFF029J24- GTCTCAGCATCCTCGTCATCATCCATATCCTCATCTTCATCACTGCTTTCATCTTCATCC
rJMFF027J23- GTCTCAGCATCCTCGTCATCATCCATATCCTCATCTTCATCACTGCTTTCATCTTCATCC
rJMSF045F09- GTCTCAGCATCCTCGTCATCATCCATATCCTCATCTTCATCACTGCTTTCATCTTCATCC
JMSF045F09+ GTCTCAGCATCCTCGTCATCATCCATATCCTCATCTTCATCACTGCTTTCATCTTCATCC
____________________________________________________________
consensus GTCTCAGCATCCTCGTCATCATCCATATCCTCATCTTCATCACTGCTTTCATCTTCATCC
. : . : . : . : . : . :
rJMFF029J24- TCATCTTTAGCACCTTTCTTTGGCTCTGCAATTTTCACC
rJMFF027J23- TCATCTTTAGCACCTTTCTTTGGCTCTGCAATTTTCACCTTCTGCTTACCCAGAGCAGAA
rJMSF045F09- TCATCTTTAGCACCTTTCTTTGGCTCTGCAATTTTCACCTTCTGCTTACCCAGAGCAGAA
JMSF045F09+ TCATCTTTAGCACCTTTCTTTGGCTCTGCAATTTTCACCTTCTGCTTACCCAGAGCAGAA
JMFF027J23+ TGCTTACCCAGAGCAGAA
JMFF029J24+ TGCTTACCCAGAGCAGAA
____________________________________________________________
consensus TCATCTTTAGCACCTTTCTTTGGCTCTGCAATTTTCACCTTCTGCTTACCCAGAGCAGAA
. : . : . : . : . : . :
rJMFF027J23- TCCTTGGCAGCATTTGCCTTCTCTGCCACAGCANGTTTCTCTGGCTTTGCCT
rJMSF045F09- TCCTTGGCAGCATTTGCCTTCTCTGCCACAGCAGGTTTCTCTGGCTTTGCCTTGGTATCA
JMSF045F09+ TCCTTGGCAGCATTTGCCTTCTCTGCCACAGCAGGTTTCTCTGGCTTTGCCTTGGTATCA
JMFF027J23+ TCCTTGGCAGCATTTGCCTTCTCTGCCACAGCAGGTTTCTCTGGCTTTGCCTTGGTATCA
JMFF029J24+ TCCTTGGCAGCATTTGCCTTCTCTGCCACAGCAGGTTTCTCTGGCTTTGCCTTGGTATCA
____________________________________________________________
consensus TCCTTGGCAGCATTTGCCTTCTCTGCCACAGCAGGTTTCTCTGGCTTTGCCTTGGTATCA
. : . : . : . : . : . :
rJMSF045F09- GGTTTCCCATTGCTTTGTATGGAGAGGGATGTCCTCGTCAGAATCAAATTCATCATCTTC
JMSF045F09+ GGTTTCCCATTGC-TTGTATGGAGAGGGATGTCCTCGTCAGAATCAAATTCATCATCTTC
JMFF027J23+ GGTTTCCCATTGC-TTGTATGGAGAGGGATGTCCTCGTCAGAATCAAATTCATCATCTTC
JMFF029J24+ GGTTTCCCATTGC-TTGTATGGAGAGGGATGTCCTCGTCAGAATCAAATTCATCATCTTC
____________________________________________________________
consensus GGTTTCCCATTGC-TTGTATGGAGAGGGATGTCCTCGTCAGAATCAAATTCATCATCTTC
. : . : . : . : . : . :
rJMSF045F09- CTCATCATCATCAATT
JMSF045F09+ CTCATCATCATCAATTGGATTTGAAGCCAGGTATCCATAAAAGAAGACACTGCCATTTTT
JMFF027J23+ CTCATCATCATCAATTGGATTTGAAGCCAGGTATCCATAAAAGAAGACACTGCCATTTTT
JMFF029J24+ CTCATCATCATCAATTGGATTTGAAGCCAGGTATCCATAAAAGAAGACACTGCCATTTTT
____________________________________________________________
consensus CTCATCATCATCAATTGGATTTGAAGCCAGGTATCCATAAAAGAAGACACTGCCATTTTT
. : . : . : . : . : . :
JMSF045F09+ CCAGTTATGTGATATTTCAAAGTCTCTATCAAAAACCAAGTCAAATTGTTGCTGGGGCAG
JMFF027J23+ CCAGTTATGTGATATTTCAAAGTCTCTATCAAAAACCAAGTCAAATTGTTGCTGGGGCAG
JMFF029J24+ CCAGTTATGTGATATTTCAAAGTCTCTATCAAAAACCAAGTCAAATTGTTGCTGGGGCAG
____________________________________________________________
consensus CCAGTTATGTGATATTTCAAAGTCTCTATCAAAAACCAAGTCAAATTGTTGCTGGGGCAG
. : . : . : . : . : . :
JMSF045F09+ CTTCTCCGTGTTCAGTGTAGCAAGAACAAGTTTCTTCCCATCAACAGTCACATACAAGCA
JMFF027J23+ CTTCTCCGTGTTCAGTGTAGCAAGAACAAGTTTCTTCCCATCAACAGTCACATACAGGCA
JMFF029J24+ CTTCTCCGTGTTCAGTGTAGCAAGAACAAGTTTCTTCCCATCAACAGTCACATACAAGCA
____________________________________________________________
consensus CTTCTCCGTGTTCAGTGTAGCAAGAACAAGTTTCTTCCCATCAACAGTCACATACAAGCA
. : . : . : . : . : . :
JMSF045F09+ AATAGATTCACCACCTTTATCTTTCTTTGCCTCACCAAGATTAGCCTGTGAAAGATGCAA
JMFF027J23+ AATAGATTCACCACCTTTATCTTTCTTTGCCTCACCAAGATTAGCCTGTGAAAGATGCAA
JMFF029J24+ AATAGATTCACCACCTTTATCTTTCTTTGCCTCACCAAGATTAGCCTGTGAAAGATGCAA
____________________________________________________________
consensus AATAGATTCACCACCTTTATCTTTCTTTGCCTCACCAAGATTAGCCTGTGAAAGATGCAA
. : . : . : . : . : . :
JMSF045F09+ TACCATGCCCTCTCCAGGTTCCACTGATAGAGGCTCTCCATTTTTTACCTCAACACCCCA
JMFF027J23+ TACCATGCCCTCTCCAGGTTCCACTGATAGAGGCTCTCCATTTTTTACCTCAACACCCCA
JMFN030H12+ CATGCCCTCTCCAGGTTCCAGTGATAGAGGCTGTCCATTTTTTACCTCAACACCCCA
JMFF029J24+ TACCATGCCCTCTCCAGGTTCCACTGATAGAGGCTCTCCATTTTTTACCTCAACACCCCA
____________________________________________________________
consensus TACCATGCCCTCTCCAGGTTCCACTGATAGAGGCTCTCCATTTTTTACCTCAACACCCCA
. : . : . : . : . : . :
JMSF045F09+ GAACTCCATTGTTGAAGCGGAAGTGTGTGGCAGAGAAGTAGGGTTTTACGTAGAAAGAGT
JMFF027J23+ GAACTCCATTGTTGAAGCGGAAGTGTGTGGCAGAGAAGTAGGGTTTTACGTAGAAAGAGT
JMFN030H12+ GAACTCCATTGTTGAAGCGGAAGTGTGTGGCAGAGAAGTAGGGTTTTACGTAGAAAGAGT
JMFF029J24+ GAACTCCATTGTCGAAGCGGAAGTGTGTGGCAGAGAAGTAGGGTTTTACGTAGAAAGAGT
____________________________________________________________
consensus GAACTCCATTGTTGAAGCGGAAGTGTGTGGCAGAGAAGTAGGGTTTTACGTAGAAAGAGT
. : . : . : . : . : . :
JMSF045F09+ GGGAGCAGACAGCGAGTACAGGAAGTATCTT
JMFF027J23+ GGGAGCAGACAGCGAGTACAGGAAGTATCTT
JMFN030H12+ GGGAGCAGACAGCGAGTACAGGAAGTATCTTAGGGTTCAATGAAGGA
JMFF029J24+ GGGAGCAGACAGCGAGTACAGGAAGTATCTTAGGGTTCAATGAAGGAGAGAAACGAGAGT
____________________________________________________________
consensus GGGAGCAGACAGCGAGTACAGGAAGTATCTTAGGGTTCAATGAAGGAGAGAAACGAGAGT