| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF020O06 | Sequence | 576 | 008781 (5) | ref|XP_009606948.1| | 2e-29 | PREDICTED: protein YLS9-like [Nicotiana tomentosiformis] ref|XP_009606954.1| PRE | 720 | 008781 (5) | ref|XP_009801147.1| | 5e-48 | PREDICTED: protein YLS9-like [Nicotiana sylvestris] ref|XP_009801149.1| PREDICTE |
| JMFN042G15 | Sequence | 560 | 008781 (5) | ref|XP_009801147.1| | 5e-21 | PREDICTED: protein YLS9-like [Nicotiana sylvestris] ref|XP_009801149.1| PREDICTE | |||||
| JMFS032H07 | Sequence | 406 | 008781 (5) | ||||||||
| JMSF018A06 | Sequence | 346 | 008781 (5) | emb|CDP06857.1| | 5e-10 | unnamed protein product [Coffea canephora] | 667 | 009766 (6) | ref|XP_004297515.1| | 4e-104 | PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic-like [Frag |
This contig is upended
. : . : . : . : . : . :
JMFS032H07+ ACATGTATGATCCCTTTAGCAATGATTAAACAAGTTAT
JMFN042G15+ ACATGTATGATCCCTTTAGCAATGATTAAACAAGTTAT
rJMFF020O06- ATGATTAAACAAGTTAT
____________________________________________________________
consensus ACATGTATGATCCCTTTAGCAATGATTAAACAAGTTAT
. : . : . : . : . : . :
JMFS032H07+ ACATGAGAAGAACAGGGGTTCAAAATAGCAGCTGTCACAAGCAATATGTATAAATGTTCA
JMFN042G15+ ACATGAGAAGAACAGGGGTTCAAAATAGCAGCTGTCACAAGCAATATGTATAAATGTTCA
rJMFF020O06- ACATGAGAAGAACAGGGGTTCAAAATAGCAGCTGTCACAAGCAATATGTATAAATGTTCA
____________________________________________________________
consensus ACATGAGAAGAACAGGGGTTCAAAATAGCAGCTGTCACAAGCAATATGTATAAATGTTCA
. : . : . : . : . : . :
JMFS032H07+ GTTAGAAGAATGAAAAAGCTGTTCATAACCTGCTAGTGGCTGAATAACTTATGTGTAATA
JMFN042G15+ GTTAGAAGAATGAAAAAGCTGTTCATAACCTGCTAGTGGCTGAATAACTTATGTGTAATA
rJMFF020O06- GTTAGAAGAATGAAAAAGCTGTTCATAACCTGCTAGTGGCTGAATAACTTATGTGTAATA
____________________________________________________________
consensus GTTAGAAGAATGAAAAAGCTGTTCATAACCTGCTAGTGGCTGAATAACTTATGTGTAATA
. : . : . : . : . : . :
JMFS032H07+ TACTCCTACTATTACTATCTACGGCACAGCAGACTGGAGTTGGGAGGAATATCAAAAATG
JMFN042G15+ TACTCCTACTATTACTATCTACGGCACAGCAGACTGGAGTTGGGAGGAATATCAAAAATG
rJMFF020O06- TACTCCTACTATTACTATCTACGGCACAGCAGACTGGAGTTGGGAGGAATATCAAAAATG
____________________________________________________________
consensus TACTCCTACTATTACTATCTACGGCACAGCAGACTGGAGTTGGGAGGAATATCAAAAATG
. : . : . : . : . : . :
JMFS032H07+ CATTGAACACAAGCGGGAGGGGAGCAGCAAGAATCCACGGTGGAGGAGAAGGAATATGTT
JMFN042G15+ CATTGAACACAAGCGGGAGGGGAGCAGCAAGAATCCACGGTGGAGGAGAAGGAATATGTT
rJMFF020O06- CATTGAACACAAGCGGGAGGGGAGCAGCAAGAATCCACGGTGGAGGAGAAGGAATATGTT
____________________________________________________________
consensus CATTGAACACAAGCGGGAGGGGAGCAGCAAGAATCCACGGTGGAGGAGAAGGAATATGTT
. : . : . : . : . : . :
JMFS032H07+ GAAGAAGACTCCGGGCGGGGCAGTGTGTAACTGAAAGTGCAGTTAGTCACCATCAAAGCC
JMFN042G15+ GAAGAAGACTCCGGGCGGGGCAGTGTGTAACTGAAAGTGCAGTTAGTCACCATCAAAGCC
rJMFF020O06- GAAGAAGACTCCGGGCGGGGCAGTGTGTAACTGAAAGTGCAGTTAGTCACCATCAAAGCC
____________________________________________________________
consensus GAAGAAGACTCCGGGCGGGGCAGTGTGTAACTGAAAGTGCAGTTAGTCACCATCAAAGCC
. : . : . : . : . : . :
JMFS032H07+ GCACCACACACTGCCTTGGACCTCCGACCAAGTTGCCAGAAGATTTGTTTTGGACAAGTC
JMFN042G15+ GCACCACACACTGCCTTGGACCTCCGACCAAGTTGCCAGAAGATTTGTTTTGGACAAGTC
rJMFF020O06- GCACCACACACTGCCTTGGACCTCCGACCAAGTTGCCAGAAGATTTGTTTTGGACAAGTC
____________________________________________________________
consensus GCACCACACACTGCCTTGGACCTCCGACCAAGTTGCCAGAAGATTTGTTTTGGACAAGTC
. : . : . : . : . : . :
JMFS032H07+ CGACCTTC
JMFN042G15+ CGACCTTCAACTCCCCACAATAAACTCTCAGAAACCTACTCCTCGCCTTCCACGATCCCG
rJMFF020O06- CGACCTTCAACTCCCCACAATAAACTCTCAGAAACCTACTCCTCGCCTTCCACGATCCCG
____________________________________________________________
consensus CGACCTTCAACTCCCCACAATAAACTCTCAGAAACCTACTCCTCGCCTTCCACGATCCCG
. : . : . : . : . : . :
JMFN042G15+ CCTTGAACCTAACCCTAGCCAGCATAAGCACATCGAATTCAATGTTGGGCGTCTCCTTCT
rJMFF020O06- CCTTGAACCTAACCCTAGCCAGCATAAGCACATCGAATTCAATGTTGGGCGTCTCCTTCT
____________________________________________________________
consensus CCTTGAACCTAACCCTAGCCAGCATAAGCACATCGAATTCAATGTTGGGCGTCTCCTTCT
. : . : . : . : . : . :
JMFN042G15+ TGATCCCTTCCACAACCCTATTATCCACAAACGTTCTAGTAG
rJMFF020O06- TGATCCCTTCCACAACCCTATTATCCACAAACGTTCTAGTAGCAGCGAATGTAGCCTTGG
____________________________________________________________
consensus TGATCCCTTCCACAACCCTATTATCCACAAACGTTCTAGTAGCAGCGAATGTAGCCTTGG
. : . : . : . : . : . :
rJMFF020O06- AGGCGGTCTCGCTCCTCTTATCCTGAAAGAAAGGCGCCACACTGGTCTCAGCAAGCTGCT
____________________________________________________________
consensus AGGCGGTCTCGCTCCTCTTATCCTGAAAGAAAGGCGCCACACTGGTCTCAGCAAGCTGCT
. : . : . : . : . : . :
rJMFF020O06- TCGAGTCGTAGTAAATCGAGGCCTGAATGTCATCGTAGTCGATAGTCATCTTCTTGTTAG
JMFF020O06+ TGAATGTCATCGTAGTCGATAGTCATCTTCTTGTTAG
____________________________________________________________
consensus TCGAGTCGTAGTAAATCGAGGCCTGAATGTCATCGTAGTCGATAGTCATCTTCTTGTTAG
. : . : . : . : . : . :
rJMFF020O06- GGTTCCGAGCCGTGGAACTGGAAGTCCCAATTCCCCGATAGAA
JMFF020O06+ GGTTCCGAGCCGT-GAACTGGAAGTCCCAATTCCCCGATAGAAAGTTATCCGAGAGGTTG
____________________________________________________________
consensus GGTTCCGAGCCGTGGAACTGGAAGTCCCAATTCCCCGATAGAAAGTTATCCGAGAGGTTG
. : . : . : . : . : . :
JMSF018A06+ CCACGCGGACNTCGGGGAGGCGGGGACGGAGGATGAGC
JMFF020O06+ AAGCTGGAAACCGACAACGAATCCACGCGGACCTCGGGGAGGCGGGGACGGAGGATGAGC
____________________________________________________________
consensus AAGCTGGAAACCGACAACGAATCCACGCGGACCTCGGGGAGGCGGGGACGGAGGATGAGC
. : . : . : . : . : . :
JMSF018A06+ CAGACGATGAAGATAACCGTGCCGGCGATGACGAAGCAGGCGATGAATATGGCGAGCACG
JMFF020O06+ CAGACGATGAAGATAACCGTGCCGGCGATGACGAAGCAGGCGATGAATATGGCGAGCACG
____________________________________________________________
consensus CAGACGATGAAGATAACCGTGCCGGCGATGACGAAGCAGGCGATGAATATGGCGAGCACG
. : . : . : . : . : . :
JMSF018A06+ CGCCGGAGGAAGGTGGCGCGTTGCACGGCGTAAGCATCGGGCTGCTGGTAGTAAGGGTTA
JMFF020O06+ CGCCGGAGGAAGGTGGCGCGTTGCACGGCGTAAGCATCGGGCTGCTGGTAGTAAGGGTTA
____________________________________________________________
consensus CGCCGGAGGAAGGTGGCGCGTTGCACGGCGTAAGCATCGGGCTGCTGGTAGTAAGGGTTA
. : . : . : . : . : . :
JMSF018A06+ TTGTTGTTGTAGTAATTATAGTTGTAGGCAGCGGGAGGCGGAGCGGCATAAGGATAGGCA
JMFF020O06+ TTGTTGTTGTAGTAATTATAGTTGTAGGCAGCGGGAGGCGGAGCGGCATAAGGATAGGCA
____________________________________________________________
consensus TTGTTGTTGTAGTAATTATAGTTGTAGGCAGCGGGAGGCGGAGCGGCATAAGGATAGGCA
. : . : . : . : . : . :
JMSF018A06+ GTGCCGGAGGAGGGTGGAGGATAACCGTTTTGATTAGCCGGTCCGGCGGGGTAGCTGGTG
JMFF020O06+ GTGCCGGAGGAGGGTGGAGGATAACCGTTTTGATTAGCCGGTCCGGCGGGGTAGCTGGTG
____________________________________________________________
consensus GTGCCGGAGGAGGGTGGAGGATAACCGTTTTGATTAGCCGGTCCGGCGGGGTAGCTGGTG
. : . : . : . : . : . :
JMSF018A06+ ACAGGCTGTGGCCTAGTCTGATCGGCCATGGCCGGCGACGGGGAGAGTATCGTGCAGGTG
JMFF020O06+ ACAGGCTGTGGCCTAGTCTGATCGGCCATGGCCGGCGACGGGGAGAGTATCGTGCAGGTG
____________________________________________________________
consensus ACAGGCTGTGGCCTAGTCTGATCGGCCATGGCCGGCGACGGGGAGAGTATCGTGCAGGTG
. : . : . : . : . : . :
JMSF018A06+ AAGACTT
JMFF020O06+ AAGACTTAAGGTTGGACTGGGGGAAGTGGGTGTTTTAGTACTTTCAAGGTAGGACTGCTT
____________________________________________________________
consensus AAGACTTAAGGTTGGACTGGGGGAAGTGGGTGTTTTAGTACTTTCAAGGTAGGACTGCTT
. : . : . : . : . : . :
JMFF020O06+ TCGAGTCGGCGAAGAATACGGTGTGAACACACTATACGCGTAGACGTAGAGAAGAAACTT
____________________________________________________________
consensus TCGAGTCGGCGAAGAATACGGTGTGAACACACTATACGCGTAGACGTAGAGAAGAAACTT