Contig 008754:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011J11Sequence554008754 (4)ref|XP_009606718.1|5e-14PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Nic698010043 (2)emb|CDP15250.1|6e-96unnamed protein product [Coffea canephora]
JMFF040G05Sequence519008754 (4)ref|XP_009606718.1|2e-18PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Nic764014902
JMSF004M19Sequence339008754 (4)
JMSF038F11Sequence510008754 (4)ref|XP_009606718.1|6e-17PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Nic906010043 (2)emb|CDP15250.1|3e-109unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF038F11+                         TTCTAGCTCGAAANTGGGCCGGGTCTTGACCCAATCGAGAAACCCA
JMFF040G05+                          TCTAGCTCGAAATTGGGCCGGGTCTTGACCCAATCGAGAAACCCA
JMFF011J11+                                                         AATCGAGAAACCCA
                      ____________________________________________________________
consensus                           TTCTAGCTCGAAATTGGGCCGGGTCTTGACCCAATCGAGAAACCCA
 
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JMSF038F11+           AGCACCGCCCTGCCCGANTCAGGGGAGAGATTGAGAGTGGCGCNGANGAGNGAATGTGTG
JMFF040G05+           AGCACCGCCCTGCCCGAATCAGGGGAGAGATTGAGAGTGGCGCGGATGAGGGAATGTGTG
JMFF011J11+           AGCACCGCCCTGCCCGAATCAGGGGAGAGATTGAGAGTGGCGCGGATGAGGGAATGTGTG
                      ____________________________________________________________
consensus             AGCACCGCCCTGCCCGAATCAGGGGAGAGATTGAGAGTGGCGCGGATGAGGGAATGTGTG
 
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JMSF038F11+           AGGGCGATGTGAGAGAAGGAAAGATCGAGTCTTTGCAGGATAGGGAGAGATTCTACCTGC
JMFF040G05+           AGGGCGATGTGAGAGAAGGAAAGATCGAGTCTTTGCAGGATAGGGAGAGATTCTACCTGC
JMFF011J11+           AGGGCGATGTGAGAGAAGGAAAGATCGAGTCTTTGCAGGATAGGGAGAGATTCTACCTGC
                      ____________________________________________________________
consensus             AGGGCGATGTGAGAGAAGGAAAGATCGAGTCTTTGCAGGATAGGGAGAGATTCTACCTGC
 
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JMSF038F11+           GGATCCTTGAGAAGCTCGGCGGAGAGAATTCCAGCCGTTGCTTCTTCTGGGCTTTCTTCA
JMSF004M19+                        GCTCGGCGGAGAGAATTCCAGCCGTTGCTTCTTCTGGGCTTTCTTCA
JMFF040G05+           GGATCCTTGAGAAGCTCGGCGGAGAGAATTCCAGCCGTTGCTTCTTCTGGGCTTTCTTCA
JMFF011J11+           GGATCCTTGAGAAGCTCGGCGGAGAGAATTCCAGCCGTTGCTTCTTCTGGGCTTTCTTCA
                      ____________________________________________________________
consensus             GGATCCTTGAGAAGCTCGGCGGAGAGAATTCCAGCCGTTGCTTCTTCTGGGCTTTCTTCA
 
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JMSF038F11+           TTTATTGACCCGCCACCGGTACGCTCNTCTGCTTCGGAAGAAANTGACCTGAGANCTGAN
JMSF004M19+           TTTATTGACCCGCCACCGGTACGCTCATCTGCTTCGGAAGAAAATGACCTGAGAGCTGAG
JMFF040G05+           TTTATTGACCCGCCACCGGTACGCTCATCTGCTTCGGAAGAAAATGACCTGAGAGCTGAG
JMFF011J11+           TTTATTGACCCGCCACCGGTACGCTCATCTGCTTCGGAAGAAAATGACCTGAGAGCTGAG
                      ____________________________________________________________
consensus             TTTATTGACCCGCCACCGGTACGCTCATCTGCTTCGGAAGAAAATGACCTGAGAGCTGAG
 
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JMSF038F11+           GAAGAAAGAAAGAAGGGTGATTTTAGTTGGNCAACGNCGGAGGAGAAAGAATATTGCGGC
JMSF004M19+           GAAGAAAGAAAGAAGGGTGATTTTAGTTGGGCAACGGCGGAGGAGAAAGAATATTGCGGC
JMFF040G05+           GAAGAAAGAAAGAAGGGTGATTTTAGTTGGGCAACGGCGGAGGAGAAAGAATATTGCGGC
JMFF011J11+           GAAGAAAGAAAGAAGGGTGATTTTAGTTGGGCAACGGCGGAGGAGAAAGAATATTGCGGC
                      ____________________________________________________________
consensus             GAAGAAAGAAAGAAGGGTGATTTTAGTTGGGCAACGGCGGAGGAGAAAGAATATTGCGGC
 
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JMSF038F11+           GAAGGAGACAGAAAATGGGGTTTAGAGAGTGAAAATTGAGGAGAGTTGAGAAGGCAATGT
JMSF004M19+           GAAGGAGACAGAAAATGGGGTTTAGAGAGTGAAAATTGAGGAGAGTTGAGAAGGCAATGT
JMFF040G05+           GAAGGAGACAGAAAATGGGGTTTAGAGAGTGAAAATTGAGGAGAGTTGAGAAGGCAATGT
JMFF011J11+           GAAGGAGACAGAAAATGGGGTTTAGAGAGTGAAAATTGAGGAGAGTTGAGAAGGCAATGT
                      ____________________________________________________________
consensus             GAAGGAGACAGAAAATGGGGTTTAGAGAGTGAAAATTGAGGAGAGTTGAGAAGGCAATGT
 
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JMSF038F11+           TCGGCGGTTGCTGATGAAGATTTCCNCCGGAAAACTGCACGGAGGTGGAGAGCCGTAGAC
JMSF004M19+           TCGGCGGTTGCTGATGAAGATTTCCACCGGAAAACTGCACGGAGGTGGAGAGCCGTAGAC
JMFF040G05+           TCGGCGGTTGCTGATGAAGATTTCCACCGGAAAACTGCACGGAGGTGGAGAGCCGTAGAC
JMFF011J11+           TCGGCGGTTGCTGATGAAGATTTCCACCGGAAAACTGCACGGAGGTGGAGAGCCGTAGAC
                      ____________________________________________________________
consensus             TCGGCGGTTGCTGATGAAGATTTCCACCGGAAAACTGCACGGAGGTGGAGAGCCGTAGAC
 
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JMSF038F11+           CTACGCATTTTGGGTGTAAAGTGAGTGAGAGAGAAAGCGGTGC                 
JMSF004M19+           CTACGCATTTTGGGTGTAAAGTGAGTGAGAGAGAAAGCGGTGCAGCGAAGC         
JMFF040G05+           CTACGCATTTTGGGTGTAAAGTGAGTGAGAGAGAAAGCGGTGCAGCGAAGC         
JMFF011J11+           CTACGCATTTTGGGTGTAAAGTGAGTGAGAGAGAAAGCGGTGCAGCGAAGCAATGGAGGC
                      ____________________________________________________________
consensus             CTACGCATTTTGGGTGTAAAGTGAGTGAGAGAGAAAGCGGTGCAGCGAAGCAATGGAGGC
 
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JMFF011J11+           GGCTGGGCTGAGGCCTGAGGGTTAAGCTCTGCTCAGGGGCTCTAGGAGGGATCAATTCCT
                      ____________________________________________________________
consensus             GGCTGGGCTGAGGCCTGAGGGTTAAGCTCTGCTCAGGGGCTCTAGGAGGGATCAATTCCT