Contig 008724:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004L10Sequence477008724 (3)ref|XP_010111628.1|2e-26E3 ubiquitin-protein ligase mib1 [Morus notabilis] gb|EXC31373.1| E3 ubiquitin-p752006781 (4)ref|XP_006356028.1|9e-29PREDICTED: ankyrin-3-like [Solanum tuberosum]
JMSF008G02Sequence388008724 (3)ref|XP_008353450.1|194PREDICTED: uncharacterized protein LOC103417020 [Malus domestica]795006781 (4)ref|XP_006338670.1|7e-32PREDICTED: inversin-like [Solanum tuberosum]
JMSF048F17Sequence718008724 (3)ref|XP_007214996.1|2e-106hypothetical protein PRUPE_ppa002307mg [Prunus persica] gb|EMJ16195.1| hypotheti770006781 (4)ref|XP_006338670.1|6e-32PREDICTED: inversin-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF008G02+ CTGTAAGCCAACACAT
                      ____________________________________________________________
consensus CTGTAAGCCAACACAT
 
. : . : . : . : . : . :
JMSF008G02+ GATCGGTGCAAGAATCAGCTAGAAGCTCCCTCAGAACCCCGAGATTACCTCCTCTAGCAG
                      ____________________________________________________________
consensus GATCGGTGCAAGAATCAGCTAGAAGCTCCCTCAGAACCCCGAGATTACCTCCTCTAGCAG
 
. : . : . : . : . : . :
JMSF008G02+ CAGCATGAAGAGCTCTGTTCTGAATCTCCCACTTGTAAGCCGATGGAATGTCACCAACGT
JMSF048F17+ AAGCCGATGGAATGTCACCAACGT
                      ____________________________________________________________
consensus CAGCATGAAGAGCTCTGTTCTGAATCTCCCACTTGTAAGCCGATGGAATGTCACCAACGT
 
. : . : . : . : . : . :
JMSF008G02+ GTTCTTCCAGCTCTTTGCCATTACCTGATAAGAACCTCGGGGAAACAGCATAATCAAAAA
JMSF048F17+ GTTCTTCCAGCTCTTTGCCATTACCTGATAAGAACCTCGGGGAAACAGCATAATCAAAAA
                      ____________________________________________________________
consensus GTTCTTCCAGCTCTTTGCCATTACCTGATAAGAACCTCGGGGAAACAGCATAATCAAAAA
 
. : . : . : . : . : . :
JMSF008G02+ GAATCCTAAAGACATGAGAATTCTTACTCCTCGCAGCAGCATAGAATATATCAGTGACAC
JMSF048F17+ GAATCCTAAAGACATGAGAATTCTTACTCCTCGCAGCAGCATAGAATATATCAGTGACAC
                      ____________________________________________________________
consensus GAATCCTAAAGACATGAGAATTCTTACTCCTCGCAGCAGCATAGAATATATCAGTGACAC
 
. : . : . : . : . : . :
JMSF008G02+ CATATTCTCCTTCGCCAAAGACAAGCAGGGGGTCTCTTTCGAGCAATTCTTGGACAAAAC
JMSF048F17+ CATATTCTCCTTCGCCAAAGACAAGCAGGGGGTCTCTTTCGAGCAATTCTTGGACAAAAC
                      ____________________________________________________________
consensus CATATTCTCCTTCGCCAAAGACAAGCAGGGGGTCTCTTTCGAGCAATTCTTGGACAAAAC
 
. : . : . : . : . : . :
JMSF008G02+ TCGAGTCCCCAGCAGAGGCAGCAGTATACAGCAGCCATCCACCACATCCTCCTCTTATAA
JMSF048F17+ TCGAGTCCCCAGCAGAGGCAGCAGTATACAGCAGCCATCCACCACATCCTCCTCTTATAA
                      ____________________________________________________________
consensus TCGAGTCCCCAGCAGAGGCAGCAGTATACAGCAGCCATCCACCACATCCTCCTCTTATAA
 
. : . : . : . : . : . :
JMSF008G02+ GAGAATTTTTGC
JMSF048F17+ GAGAATTTTTGCCTTTCTTGTTCTCGCACTCCACAAGCAGCTTTCTTGCAACCTGAGACC
                      ____________________________________________________________
consensus GAGAATTTTTGCCTTTCTTGTTCTCGCACTCCACAAGCAGCTTTCTTGCAACCTGAGACC
 
. : . : . : . : . : . :
JMSF048F17+ TACACTTAGCAACATCGTGAAACTGTGCTTCATCATCCCATACAGTCTCAAGGCGACGAA
                      ____________________________________________________________
consensus TACACTTAGCAACATCGTGAAACTGTGCTTCATCATCCCATACAGTCTCAAGGCGACGAA
 
. : . : . : . : . : . :
JMSF048F17+ TTCTGCGCAGTGAGGTGAGCTTGAAAAGGTGATTGCTGTCCAGGCGAAGAAGTTCCCTGA
JMFF004L10+ GTCCAGGCGAAGAAGTTCCCTGA
                      ____________________________________________________________
consensus TTCTGCGCAGTGAGGTGAGCTTGAAAAGGTGATTGCTGTCCAGGCGAAGAAGTTCCCTGA
 
. : . : . : . : . : . :
JMSF048F17+ CCAGATCATAGTGTCCATTGGCAGCTGCCCAGTCAATCGGGGATGCAAACCACCACTGGT
JMFF004L10+ CCAGATCATAGTGTCCATTGGCAGCTGCCCAGTCAATCGGGGATGCAAACCACCACTGGT
                      ____________________________________________________________
consensus CCAGATCATAGTGTCCATTGGCAGCTGCCCAGTCAATCGGGGATGCAAACCACCACTGGT
 
. : . : . : . : . : . :
JMSF048F17+ CACCGGTGCTCTCCCA
JMFF004L10+ CACCGGTGCTCTCCCACCGGAGAGGAAAGTAGGTTGGGGACATTGAAAACCAAGTATACC
                      ____________________________________________________________
consensus CACCGGTGCTCTCCCACCGGAGAGGAAAGTAGGTTGGGGACATTGAAAACCAAGTATACC
 
. : . : . : . : . : . :
JMFF004L10+ AAATTCACCAACAAAGTGTTATCTTTCTCTTGAAAATTGAAATAGCTCTTTGTAAAGTCC
                      ____________________________________________________________
consensus AAATTCACCAACAAAGTGTTATCTTTCTCTTGAAAATTGAAATAGCTCTTTGTAAAGTCC
 
. : . : . : . : . : . :
JMFF004L10+ ACTTCAACTTTTGGTAAAGCTTTTTTGCTTTTGTTTTGTTTTGTTGCGAGGAGGGTTGAG
                      ____________________________________________________________
consensus ACTTCAACTTTTGGTAAAGCTTTTTTGCTTTTGTTTTGTTTTGTTGCGAGGAGGGTTGAG
 
. : . : . : . : . : . :
JMFF004L10+ GAGGCTGACAGCGTATGAGAAGGTGGTACAAGTAAGTGTATGAAAAGGAGAGATTCCTCT
                      ____________________________________________________________
consensus GAGGCTGACAGCGTATGAGAAGGTGGTACAAGTAAGTGTATGAAAAGGAGAGATTCCTCT
 
. : . : . : . : . : . :
JMFF004L10+ TGAAATGTGAAAGCCGCTTTTAAGTATGGAGATCAGAGAGAGATCCCGCGCCAAAGACAG
                      ____________________________________________________________
consensus TGAAATGTGAAAGCCGCTTTTAAGTATGGAGATCAGAGAGAGATCCCGCGCCAAAGACAG
 
. : . : . : . : . : . :
JMFF004L10+ AATATACGGTGTGGGTTCCGGTCGGCGGTGACTGCTACGCCTACGGTGCAACGAAGATAT
                      ____________________________________________________________
consensus AATATACGGTGTGGGTTCCGGTCGGCGGTGACTGCTACGCCTACGGTGCAACGAAGATAT