Contig 008714:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002J18Sequence523008714 (11)ref|XP_008357155.1|4e-54PREDICTED: 5'-3' exoribonuclease 3-like [Malus domestica]
JMFF010I11Sequence543008714 (11)ref|XP_008357155.1|7e-59PREDICTED: 5'-3' exoribonuclease 3-like [Malus domestica]780010996 (3)ref|XP_009591848.1|3e-12PREDICTED: 5'-3' exoribonuclease 3-like isoform X3 [Nicotiana tomentosiformis]
JMFF020C18Sequence536008714 (11)ref|XP_008357155.1|4e-58PREDICTED: 5'-3' exoribonuclease 3-like [Malus domestica]671010996 (3)ref|XP_009591848.1|1e-10PREDICTED: 5'-3' exoribonuclease 3-like isoform X3 [Nicotiana tomentosiformis]
JMFF051L10Sequence522008714 (11)ref|XP_009783160.1|2e-55PREDICTED: 5'-3' exoribonuclease 3-like, partial [Nicotiana sylvestris]446010996 (3)
JMFS020G06Sequence629008714 (11)ref|XP_009783160.1|2e-86PREDICTED: 5'-3' exoribonuclease 3-like, partial [Nicotiana sylvestris]
JMFS041D03Sequence660008714 (11)ref|XP_009783160.1|2e-58PREDICTED: 5'-3' exoribonuclease 3-like, partial [Nicotiana sylvestris]
JMFS093H07Sequence616008714 (11)ref|XP_009783160.1|2e-58PREDICTED: 5'-3' exoribonuclease 3-like, partial [Nicotiana sylvestris]
JMFS112E09Sequence626008714 (11)ref|XP_009783160.1|3e-59PREDICTED: 5'-3' exoribonuclease 3-like, partial [Nicotiana sylvestris]
JMFS133H08Sequence626008714 (11)ref|XP_009783160.1|2e-75PREDICTED: 5'-3' exoribonuclease 3-like, partial [Nicotiana sylvestris]
JMFS147G10Sequence627008714 (11)ref|XP_009783160.1|2e-65PREDICTED: 5'-3' exoribonuclease 3-like, partial [Nicotiana sylvestris]
JMFS168D01Sequence617008714 (11)ref|XP_009783160.1|2e-55PREDICTED: 5'-3' exoribonuclease 3-like, partial [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS020G06+                               CTTAATGTTTCTCCATCCAGGATCATAGTTTAGCCTGAGA
JMFS041D03+                                                              AGCCTGAGA
                      ____________________________________________________________
consensus                                 CTTAATGTTTCTCCATCCAGGATCATAGTTTAGCCTGAGA
 
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JMFS020G06+           TGAATGTAGTACTGGAGTGCAATTGACAAAGTGGCCATGAAGGGAGTTCCAGGAGTGATA
JMFS133H08+                              CAATTGACAAAGTGGCCATGAAGGGAGTTCCAGGAGTGATA
JMFS041D03+           TGAATGTAGTACTGNAGT-CAATTGACAAAGTGGCCATGAAGGGAGTTCCAGGAGTGATA
                      ____________________________________________________________
consensus             TGAATGTAGTACTGGAGTGCAATTGACAAAGTGGCCATGAAGGGAGTTCCAGGAGTGATA
 
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JMFS020G06+           ACATTTGAATCAAAAGTTTGTGATTCCTGCTTGGGAGGAAGCTTCCTACCCTCCTGCTCA
JMFS133H08+           ACATTTGAATCAAAAGTTTGTGATTCCTGCTTGGGAGGAAGCTTCCTACCCTCCTGCTCA
JMFS041D03+           ACA-TTGAATCAANAGTTTGTGATTCCTGCTTGGGAGGAAGCTTCCTACCCTCCTGCTCA
JMFS147G10+               TTGAATCAAAAGTTTGTGATTCCTGCTTGGGAGGAAGCTTCCTACCCTCCTGCTCA
JMFS112E09+                                          TGGGAGGAAGCTTCCTACCCTCCTGCTCA
JMFS093H07+                      AAAAGTNTGTGATTCCTGCTTGGGAGGAAGCTTCCTACCCTCCTGCTCA
JMFS168D01+                                          TGGGAGGAAGCTTCCTACCCTCCTGCTCA
                      ____________________________________________________________
consensus             ACATTTGAATCAAAAGTTTGTGATTCCTGCTTGGGAGGAAGCTTCCTACCCTCCTGCTCA
 
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JMFS020G06+           AACTCCTCACGCAACCTTTCCTCTTCAGCTGCCGCTTCAGCTGCATCTTTTGCGGCTCTA
JMFS133H08+           AACTCCTCACGCAACCTTTCCTCTTCAGCTGCCGCTTCAGCTGCATCTTTTGCGGCTCTA
JMFS041D03+           AACTCCTCACGCAACCTTTCCTCTTCAGCTGCCGCTTCAGCTGCATCTTNTGCGGCTCTA
JMFS147G10+           AACTCCTCACGCAACCTTTCCTCTTCAGCTGCCGCTTCAGCTGCATCTTTTGCGGCTCTA
JMFS112E09+           AACTCCTCACGCAACCTTTCCTCTTCAGCTGCCGCTTCAGCTGCATCTTTTGCGGCTCTA
JMFS093H07+           AACTCCTCACGCAACCTTTCCTCTTCAGCTGCCGCTTCAGCTGCATCTTTTGCGGCTCTA
JMFS168D01+           AACTCCTCACGCAACCTTTCCTCTTCAGCTGCCGCTTCAGCTGCATCTTNTGCGGCTCTA
JMFF010I11+                                                                    CTA
                      ____________________________________________________________
consensus             AACTCCTCACGCAACCTTTCCTCTTCAGCTGCCGCTTCAGCTGCATCTTTTGCGGCTCTA
 
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JMFS020G06+           AAACGCCTAGACCTTTGCTGATTCATTTTAGCTCTTGGAGCAACACCATCAATAGCCATG
JMFS133H08+           AAACGCCTAGACCTTTGCTGATTCATTTTAGCTCTTGGAGCAACACCATCAATAGCCATG
JMFS041D03+           AAACGCCTAGACCTTTGCTGATTCATTTTAGCTCTTGGAGCAACACCATCAATAGCCATG
JMFS147G10+           AAACGCCTAGACCTTTGCTGATTCATTTTAGCTCTTGGAGCAACACCATCAATAGCCATG
JMFS112E09+           AAACGCCTAGACCTTTGCTGATTCATTTTAGCTCTTGGAGCAACACCATCAATAGCCATG
JMFS093H07+           AAACGCCTAGACCTTTGCTGATTCATTTTAGCTCTTGGAGCAACACCATCAATAGCCATG
JMFS168D01+           AAACGCCTAGACCTTTGCTGATTCATTTTAGCTCTTGGAGCAACACCATCAATAGCCATG
JMFF051L10+                             TGATTCATTTTAGCTCTTGGAGCAACACCATCAATAGCCATG
JMFF020C18+               GCCTAGACCTTTGCTGATTCATTTTAGCTCTTGGAGCAACACCATCAATAGCCATG
JMFF010I11+           AAACGCCTAGACCTTTGCTGATTCATTTTAGCTCTTGGAGCAACACCATCAATAGCCATG
JMFF002J18+                            CTGATTCATTTTAGCTCTTGGAGCAACACCATCAATAGCCATG
                      ____________________________________________________________
consensus             AAACGCCTAGACCTTTGCTGATTCATTTTAGCTCTTGGAGCAACACCATCAATAGCCATG
 
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JMFS020G06+           TACAGTAGCTTTCGAGGGCGCACCATTACAAAGAGCCTGTCTATATAGTCAAACATGCAT
JMFS133H08+           TACAGTAGCTTTCGAGGGCGCACCATTACAAAGAGCCTGTCTATATAGTCAAACATGCAT
JMFS041D03+           TACAGTAGCTTTCGAGGGCGCACCATTACAAAGAGCCTGTCTATATAGTCAAACATGCAT
JMFS147G10+           TACAGTAGCTTTCGAGGGCGCACCATTACAAAGAGCCTGTCTATATAGTCAAACATGCAT
JMFS112E09+           TACAGTAGCTTTCGAGGGCGCACCATTACAAAGAGCCTGTCTATATAGTCAAACATGCAT
JMFS093H07+           TACAGTAGCTTTCGAGGGCGCACCATTACAAAGAGCCTGTCTATATAGTCAAACATGCAT
JMFS168D01+           TACAGTAGCTTTCGAGGGCGCACCATTACAAAGAGCCTGTCTATATAGTCAAACATGCAT
JMFF051L10+           TACAGTAGCTTTCGAGGGCGCACCATTACAAAGAGCCTGTCTATATAGTCAAACATGCAT
JMFF020C18+           TACAGTAGCTTTCGAGGGCGCACCATTACAAAGAGCCTGTCTATATAGTCAAACATGCAT
JMFF010I11+           TACAGTAGCTTTCGAGGGCGCACCATTACAAAGAGCCTGTCTATATAGTCAAACATGCAT
JMFF002J18+           TACAGTAGCTTTCGAGGGCGCACCATTACAAAGAGCCTGTCTATATAGTCAAACATGCAT
                      ____________________________________________________________
consensus             TACAGTAGCTTTCGAGGGCGCACCATTACAAAGAGCCTGTCTATATAGTCAAACATGCAT
 
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JMFS020G06+           CGAAATACCTCCTCGAATGTGGTAGGAGAAGGTCGATCTTCGGGGTGAAAACACGGGTGA
JMFS133H08+           CGAAATACCTCCTCGAATGTGGTAGGAGAAGGTCGATCTTCGGGGTAAAAACACGGGTGA
JMFS041D03+           CGAAATACCTCCTCGAATGTGGTAGGAGAAGGTCGATCTTCGGGGTGAAAACACGGGTGA
JMFS147G10+           CGAAATACCTCCTCGAATGTGGTAGGAGAAGGTCGATCTTCGGGGTGAAAACACGGGTGA
JMFS112E09+           CGAAATACCTCCTCGAATGTGGTAGGAGAAGGTCGATCTTCGGGGTGAAAACACGGGTGA
JMFS093H07+           CGAAATACCTCCTCGAATGTGGTAGGAGAAGGTCGATCTTCGGGGTGAAAACACGGGTGA
JMFS168D01+           CGAAATACCTCCTCGAATGTGGTAGGAGAAGGTCGATCTTCGGGGTGAAAACACGGGTGA
JMFF051L10+           CGAAATACCTCCTCGAATGTGGTAGGAGAAGGTCGATCTTCGGGGTGAAAACACGGGTGA
JMFF020C18+           CGAAATACCTCCTCGAATGTGGTAGGAGAAGGTCGATCTTCGGGGTGAAAACACGGGTGA
JMFF010I11+           CGAAATACCTCCTCGAATGTGGTAGGAGAAGGTCGATCTTCGGGGTGAAAACACGGGTGA
JMFF002J18+           CGAAATACCTCCTCGAATGTGGTAGGAGAAGGTCGATCTTCGGGGTGAAAACACGGGTGA
                      ____________________________________________________________
consensus             CGAAATACCTCCTCGAATGTGGTAGGAGAAGGTCGATCTTCGGGGTGAAAACACGGGTGA
 
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JMFS020G06+           ATAATACCATTCATATCTAGATAGAGGTTATCGAATTCGATATTATTTGGATTAGGTTTA
JMFS133H08+           ATAATACCATTCATATCTAGATAGAGGTTATCGAATTCGATATTATTTGGATTAGGTTTA
JMFS041D03+           ATAATACCATTCATATCTAGATAGAGGTTATCGAATTCGATATTATTTGGATTAGGTTTA
JMFS147G10+           ATAATACCATTCATATCTAGATAGAGGTTATCGAATTCGATATTATTTGGATTAGGTTTA
JMFS112E09+           ATAATACCATTCATATCTAGATAGAGGTTATCGAATTCGATATTATTTGGATTAGGTTTA
JMFS093H07+           ATAATACCATTCATATCTAGATAGAGGTTATCGAATTCGATATTATTTGGATTAGGTTTA
JMFS168D01+           ATAATACCATTCATATCTAGATAGAGGTTATCGAATTCGATATTATTTGGATTAGGTTTA
JMFF051L10+           ATAATACCATTCATATCTAGATAGAGGTTATCGAATTCGATATTATTTGGATTAGGTTTA
JMFF020C18+           ATAATACCATTCATATCTAGATAGAGGTTATCGAATTCGATATTATTTGGATTAGGTTTA
JMFF010I11+           ATAATACCATTCATATCTAGATAGAGGTTATCGAATTCGATATTATTTGGATTAGGTTTA
JMFF002J18+           ATAATACCATTCATATCTAGATAGAGGTTATCGAATTCGATATTATTTGGATTAGGTTTA
                      ____________________________________________________________
consensus             ATAATACCATTCATATCTAGATAGAGGTTATCGAATTCGATATTATTTGGATTAGGTTTA
 
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JMFS020G06+           CTGGTATCCACCGGAATTTTTACTCCTTCGATAACCACCGCCTCTTCCTCGATCACATCC
JMFS133H08+           CTGGTATCCACCGGAATTTTTACTCCTTCGATAACCACCGCCTCTTCCTCGATCACATCC
JMFS041D03+           CTGGTATCCACCGGAATTTTTACTCCTTCGATAACCACCGCCTCTTCCTCGATCACATCC
JMFS147G10+           CTGGTATCCACCGGAATTTTTACTCCTTCGATAACCACCGCCTCTTCCTCGATCACATCC
JMFS112E09+           CTGGTATCCACCGGAATTTTTACTCCTTCGATAACCACCGCCTCTTCCTCGATCACATCC
JMFS093H07+           CTGGTATCCACCGGAATTTTTACTCCTTCGATAACCACCGCCTCTTCCTCGATCACATCC
JMFS168D01+           CTGGTATCCACCGGAATTTTTACTCCTTCGATAACCACCGCCTCTTCCTCGATCACATCC
JMFF051L10+           CTGGTATCCACCGGAATTTTTACTCCTTCGATAACCACCGCCTCTTCCTCGATCACATCC
JMFF020C18+           CTGGTATCCACCGGAATTTTTACTCCTTCGATAACCACCGCCTCTTCCTCGATCACATCC
JMFF010I11+           CTGGTATCCACCGGAATTTTTACTCCTTCGATAACCACCGCCTCTTCCTCGATCACATCC
JMFF002J18+           CTGGTATCCACCGGAATTTTTACTCCTTCGATAACCACCGCCTCTTCCTCGATCACATCC
                      ____________________________________________________________
consensus             CTGGTATCCACCGGAATTTTTACTCCTTCGATAACCACCGCCTCTTCCTCGATCACATCC
 
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JMFS020G06+           ACCACCACCATCGAATACTTCTCCGCCAGCCACCGGTAAAATGCCGGAACTCCCATTTTC
JMFS133H08+           ACCACCACCATCGAATACTTCTCCGCCAGCCACCGGTAAAATGCCGGAACTCCCATTTTC
JMFS041D03+           ACCACCACCATCGAATACTTCTCCGCCAGCCACCGGTAAAATGCCGGAACTCCCATTTTC
JMFS147G10+           ACCACCACCATCGAATACTTCTCCGCCAGCCACCGGTAAAATGCCGGAACTCCCATTTTC
JMFS112E09+           ACCACCACCATCGAATACTTCTCCGCCAGCCACCGGTAAAATGCCGGAACTCCCATTTTC
JMFS093H07+           ACCACCACCATCGAATACTTCTCCGCCAGCCACCGGTAAAATGCCGGAACTCCCATTTTC
JMFS168D01+           ACCACCACCATCGAATACTTCTCCGCCAGCCACCGGTAAAATGCCGGAACTCCCATTTTC
JMFF051L10+           ACCACCACCATCGAATACTTCTCCGCCAGCCACCGGTAAAATGCCGGAACTCCCATTTTC
JMFF020C18+           ACCACCACCATCGAATACTTCTCCGCCAGCCACCGGTAAAATGCCGGAACTCCCATTTTC
JMFF010I11+           ACCACCACCATCGAATACTTCTCCGCCAGCCACCGGTAAAATGCCGTAACTCCCATTTTC
JMFF002J18+           ACCACCACCATCGAATACTTCTCCGCCAGCCACCGGTAAAATGCCGTAACTCCCATTTTC
                      ____________________________________________________________
consensus             ACCACCACCATCGAATACTTCTCCGCCAGCCACCGGTAAAATGCCGGAACTCCCATTTTC
 
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JMFS020G06+           GCCCAATTCTAAACAAAACCGCTGAATCTCGCACAGAACTCCAATCAAC           
JMFS133H08+           GCCCAATTCTAAACAAAACCGCTGAATCTCGCACAGAACTCCAATCAACGTATGTATGTA
JMFS041D03+           GCCCAATTCTAAACAAAACCGCTGAATCTCGCACAGAACTCCAATCAACGTATGTATGTA
JMFS147G10+           GCCCAATTCTAAACAAAACCGCTGAATCTCGCACAGAACTCCAATCAACGTATGTATGTA
JMFS112E09+           GCCCAATTCTAAACAAAACCGCTGAATCTCGCACAGAACTCCAATCAACGTATGTATGTA
JMFS093H07+           GCCCAATTCTAAACAAAACCGCTGAATCTCGCACAGAACTCCAATCAACGTATGTATGTA
JMFS168D01+           GCCCAATTCTAAACAAAACCGCTGAATCTCGCACAGAACTCCAATCAACGTATGTATGTA
JMFF051L10+           GCCCAATTCTAAACAAAACCGCTGAATCTCGCACAGAACTCCAATCAACGTATGTATGTA
JMFF020C18+           GCCCAATTCTAAACAAAACCGCTGAATCTCGCACAGAACTCCAATCAACGTATGTATGTA
JMFF010I11+           GCCCAATTCTAAACAAAACCGCTGAATCTCGCACAGAACTCCAATCAACGTATGTATGTA
JMFF002J18+           GCCCAATTCTAAACAAAACCGCTGAATCTCGCACAGAACTCCAATCAACGTATGTATGTA
                      ____________________________________________________________
consensus             GCCCAATTCTAAACAAAACCGCTGAATCTCGCACAGAACTCCAATCAACGTATGTATGTA
 
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JMFS133H08+           TGCAAGTGTATATATGTATATTAATA                                  
JMFS041D03+           TGCAAGTGTATATATGTATATTAATATGTAGTAGTAAATCGGAAGGAAGA          
JMFS147G10+           TGCAAGTGTATATATGTATATTAATATGTAGTAGTAAATCGGAAGGAAGATAAATGAATT
JMFS112E09+           TGCAAGTGTATATATGTATATTAATATGTAGTAGTAAATCGGAAGGAAGATAAATGAATT
JMFS093H07+           TGCAAGTGTATATATGTATATTAATATGTAGTAGTAAATCGGAAGGAAGATAAATGAATT
JMFS168D01+           TGCAAGTGTATATATGTATATTAATATGTAGTAGTAAATCGGAAGGAAGATAAATGAATT
JMFF051L10+           TGCAAGTGTATATATGTATATTAATATGTAGTAGTAAATCGGAAGGAAGATAAATGAATT
JMFF020C18+           TGCAAGTGTATATATGTATATTAATATGTAGTAGTAAATCGGAAGGAAGATAAATGAATT
JMFF010I11+           TGCAAGTGTATATATGTATATTAATATGTAGTAGTAAATCGGAAGGAAGATAAATGAATT
JMFF002J18+           TGCAAGTGTATATATGTATATTAATATGTAGTAGTAAATCGGAAGGAAGATAAATGAATT
                      ____________________________________________________________
consensus             TGCAAGTGTATATATGTATATTAATATGTAGTAGTAAATCGGAAGGAAGATAAATGAATT
 
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JMFS147G10+           TGAAGAAGAAAA                                                
JMFS112E09+           TGAAGAAGAAAA                                                
JMFS093H07+           TGAAGAAGAAAAGAAA                                            
JMFS168D01+           TGAAGAAGAAAAGAAAGAAGTAGAACGACGTTAAGCAA                      
JMFF051L10+           TGAAGAAGAAAAGAAAGAAGTAGAACGACGTTAAGCAAGATGCAAAGAAATCAAGAATA 
JMFF020C18+           TGAAGAAGAAAAGAAAGAAGTAGAACGACGTTAAGCAAGATGCAAAGAAATCAAGAATA 
JMFF010I11+           TGAAGAAGAAAAGAAAGAAGTAGAACGACGTTAAGCAAGATGCAAAGAAATCAAGAATA 
JMFF002J18+           TGAAGAAGAAAAGAAAGAAGTAGAACGACGTTAAGCAAGATGCAAAGAAATCAAGAATAG
                      ____________________________________________________________
consensus             TGAAGAAGAAAAGAAAGAAGTAGAACGACGTTAAGCAAGATGCAAAGAAATCAAGAATAG